Ggra11028.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11028.t1
Unique NameGgra11028.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length637
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:58493..60403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705126.1
Preferred nameTHFS
PFAMsFTHFS
Max annot lvl2759|Eukaryota
KEGG rclassRC00026,RC00111,RC00202,RC00578
KEGG koko:K00288,ko:K01938
KEGG ReactionR00943,R01220,R01655
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200
KEGG ModuleM00140,M00141,M00377
GOsGO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006144,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.97e-291
EggNOG OGsCOG2759@1|root,2QSVW@2759|Eukaryota
EC1.5.1.5,3.5.4.9,6.3.4.3
Descriptionformate-tetrahydrofolate ligase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11028Ggra11028Gracilaria gracilis GNS1m malegenetig00000894_pilon 58493..60403 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11028.t1.stop1Ggra11028.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 58493..58495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11028.t1.CDS1Ggra11028.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 58493..60403 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11028.t1.exon1Ggra11028.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 58493..60403 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11028.t1.start1Ggra11028.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 60401..60403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11028.t1Ggra11028.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 58493..60403 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11028.t1 ID=Ggra11028.t1|Name=Ggra11028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=637bp
MVTTGRKVKPTSPVQSDIEIAQSVSIQPITHIAEGAGILAEELISYGTTK
AKVSLSARNRLANSPDGHLVIVAGINPTSLGEGKSTTTIGLSQALGAHIN
KNVFTCIRQPSQGPTFGIKGGAAGGGWSQVIPMDDFNLHLTGDIHAISAA
NNLLAAAIDTRILHERNQTDEALFGRLCPLNAKDGSRRFARNMFPRLKKL
GITTNDPNELTPEDISRFVRLDINPDTIQWNRVLDVNDRYLRSLTIGKSP
TEKGYVRDSSFDITVASEIMAILSLATSLKDLRERLGRIVVAESNTGELI
TAEDLGVAGALTVLMKDALMPNLLQTLEGTPTFVHAGPFANIASGNSSVI
ADQLALKLVGPDGLVITEAGFGSEIGLEKFVHLKSRLGGVQPSVIVLIAT
VRALKMHGGGPPVSAGTPLSSVYTEENIELVQKGFANLKRHIEHANQYGV
PVVVCCNRFHTDSDKELECIIELSKDAGAFDAVVSNHWEEGGKGAIDLAN
SVVNASKAPGKSFRFIYEDSEPLRKKIETVATKVYGADGVEFSEKASQRL
DLYEKKGFGQMPICIAKTQYSLSADASLKGAPKGFVLPVREVRLSAGAGF
VLVICGNIQTMPGLPTRPSYYDVDIDTETGRVIGLM*
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spliced messenger RNA

>Ggra11028.t1 ID=Ggra11028.t1|Name=Ggra11028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00000894_pilon:58493..60403- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACTACTGGCCGCAAGGTCAAACCAACATCCCCTGTTCAATCTGA
CATTGAGATTGCGCAGTCTGTATCGATACAGCCTATAACCCATATTGCAG
AAGGGGCAGGCATCCTTGCGGAGGAGCTTATTTCGTACGGCACAACAAAG
GCAAAGGTTTCATTGTCTGCACGAAATCGTCTTGCCAATTCCCCTGATGG
CCATCTTGTTATCGTTGCGGGTATAAATCCGACATCCCTGGGCGAAGGTA
AGAGTACCACTACTATCGGCCTCAGCCAAGCACTTGGAGCACACATAAAC
AAAAATGTGTTCACCTGTATCAGGCAACCAAGCCAGGGCCCCACCTTTGG
CATAAAAGGGGGAGCGGCTGGAGGTGGCTGGAGTCAAGTCATTCCCATGG
ACGATTTCAACTTGCATCTAACTGGCGACATCCACGCAATATCTGCCGCG
AATAACTTGCTCGCTGCCGCAATTGACACTCGTATACTCCACGAAAGGAA
CCAAACTGATGAAGCACTTTTCGGGAGACTTTGTCCGTTGAACGCGAAAG
ATGGCTCTCGTCGTTTTGCTCGCAACATGTTTCCCCGTTTGAAGAAGCTG
GGCATAACCACTAACGACCCAAATGAACTCACTCCGGAAGATATTTCAAG
GTTTGTGCGCCTCGACATAAATCCGGATACAATTCAATGGAATCGCGTTC
TAGATGTGAACGATCGCTATCTCCGCTCTTTGACGATTGGGAAATCCCCT
ACTGAAAAAGGCTACGTCCGCGATTCAAGTTTCGACATCACGGTGGCTTC
AGAGATTATGGCAATTCTCTCCCTGGCAACCAGTCTCAAGGATTTGAGAG
AACGTCTTGGGCGTATAGTGGTTGCCGAATCAAACACAGGAGAATTGATT
ACAGCTGAAGATCTTGGTGTTGCAGGTGCACTCACAGTTTTAATGAAGGA
TGCTTTAATGCCAAACCTGCTACAAACACTCGAGGGAACACCAACATTTG
TCCACGCCGGACCCTTTGCCAACATTGCTTCCGGAAATTCATCCGTAATA
GCAGACCAGTTGGCTCTGAAGCTAGTGGGACCCGATGGCCTTGTAATAAC
GGAAGCTGGCTTCGGGTCTGAAATCGGTTTGGAAAAGTTCGTACATCTGA
AATCCCGACTTGGAGGGGTACAGCCTTCTGTAATTGTATTGATTGCAACG
GTCCGAGCATTGAAGATGCACGGCGGTGGTCCTCCTGTTTCAGCCGGCAC
GCCATTATCTTCGGTATATACTGAAGAAAACATTGAACTTGTGCAAAAGG
GCTTCGCCAACTTGAAACGCCACATAGAGCATGCAAACCAATATGGAGTA
CCCGTCGTTGTGTGCTGTAATCGATTCCATACGGACAGCGATAAAGAGCT
TGAGTGCATCATTGAGTTATCAAAAGATGCCGGTGCATTTGATGCTGTTG
TTTCGAATCATTGGGAGGAAGGGGGCAAAGGAGCCATTGATTTGGCAAAT
TCTGTCGTTAATGCGAGTAAGGCCCCTGGTAAGAGCTTTCGATTCATATA
CGAGGATAGCGAACCGTTGCGAAAGAAGATAGAAACAGTGGCGACCAAAG
TGTACGGAGCGGACGGTGTCGAGTTCTCCGAGAAGGCAAGTCAAAGGCTT
GATCTGTACGAGAAGAAAGGGTTTGGTCAAATGCCAATATGTATCGCTAA
GACGCAGTACAGTCTATCTGCTGACGCGTCTTTGAAGGGTGCACCAAAAG
GTTTTGTGCTGCCGGTAAGGGAAGTGCGGTTGAGTGCCGGTGCTGGATTT
GTGTTGGTCATATGCGGCAACATCCAGACAATGCCAGGATTACCGACACG
CCCTTCCTACTATGACGTAGACATTGATACCGAAACGGGGCGAGTCATTG
GACTCATGTAA
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protein sequence of Ggra11028.t1

>Ggra11028.t1 ID=Ggra11028.t1|Name=Ggra11028.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=637bp
MVTTGRKVKPTSPVQSDIEIAQSVSIQPITHIAEGAGILAEELISYGTTK
AKVSLSARNRLANSPDGHLVIVAGINPTSLGEGKSTTTIGLSQALGAHIN
KNVFTCIRQPSQGPTFGIKGGAAGGGWSQVIPMDDFNLHLTGDIHAISAA
NNLLAAAIDTRILHERNQTDEALFGRLCPLNAKDGSRRFARNMFPRLKKL
GITTNDPNELTPEDISRFVRLDINPDTIQWNRVLDVNDRYLRSLTIGKSP
TEKGYVRDSSFDITVASEIMAILSLATSLKDLRERLGRIVVAESNTGELI
TAEDLGVAGALTVLMKDALMPNLLQTLEGTPTFVHAGPFANIASGNSSVI
ADQLALKLVGPDGLVITEAGFGSEIGLEKFVHLKSRLGGVQPSVIVLIAT
VRALKMHGGGPPVSAGTPLSSVYTEENIELVQKGFANLKRHIEHANQYGV
PVVVCCNRFHTDSDKELECIIELSKDAGAFDAVVSNHWEEGGKGAIDLAN
SVVNASKAPGKSFRFIYEDSEPLRKKIETVATKVYGADGVEFSEKASQRL
DLYEKKGFGQMPICIAKTQYSLSADASLKGAPKGFVLPVREVRLSAGAGF
VLVICGNIQTMPGLPTRPSYYDVDIDTETGRVIGLM*
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mRNA from alignment at tig00000894_pilon:58493..60403-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11028.t1 ID=Ggra11028.t1|Name=Ggra11028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00000894_pilon:58493..60403- (Gracilaria gracilis GNS1m male)
ATGGTCACTACTGGCCGCAAGGTCAAACCAACATCCCCTGTTCAATCTGA
CATTGAGATTGCGCAGTCTGTATCGATACAGCCTATAACCCATATTGCAG
AAGGGGCAGGCATCCTTGCGGAGGAGCTTATTTCGTACGGCACAACAAAG
GCAAAGGTTTCATTGTCTGCACGAAATCGTCTTGCCAATTCCCCTGATGG
CCATCTTGTTATCGTTGCGGGTATAAATCCGACATCCCTGGGCGAAGGTA
AGAGTACCACTACTATCGGCCTCAGCCAAGCACTTGGAGCACACATAAAC
AAAAATGTGTTCACCTGTATCAGGCAACCAAGCCAGGGCCCCACCTTTGG
CATAAAAGGGGGAGCGGCTGGAGGTGGCTGGAGTCAAGTCATTCCCATGG
ACGATTTCAACTTGCATCTAACTGGCGACATCCACGCAATATCTGCCGCG
AATAACTTGCTCGCTGCCGCAATTGACACTCGTATACTCCACGAAAGGAA
CCAAACTGATGAAGCACTTTTCGGGAGACTTTGTCCGTTGAACGCGAAAG
ATGGCTCTCGTCGTTTTGCTCGCAACATGTTTCCCCGTTTGAAGAAGCTG
GGCATAACCACTAACGACCCAAATGAACTCACTCCGGAAGATATTTCAAG
GTTTGTGCGCCTCGACATAAATCCGGATACAATTCAATGGAATCGCGTTC
TAGATGTGAACGATCGCTATCTCCGCTCTTTGACGATTGGGAAATCCCCT
ACTGAAAAAGGCTACGTCCGCGATTCAAGTTTCGACATCACGGTGGCTTC
AGAGATTATGGCAATTCTCTCCCTGGCAACCAGTCTCAAGGATTTGAGAG
AACGTCTTGGGCGTATAGTGGTTGCCGAATCAAACACAGGAGAATTGATT
ACAGCTGAAGATCTTGGTGTTGCAGGTGCACTCACAGTTTTAATGAAGGA
TGCTTTAATGCCAAACCTGCTACAAACACTCGAGGGAACACCAACATTTG
TCCACGCCGGACCCTTTGCCAACATTGCTTCCGGAAATTCATCCGTAATA
GCAGACCAGTTGGCTCTGAAGCTAGTGGGACCCGATGGCCTTGTAATAAC
GGAAGCTGGCTTCGGGTCTGAAATCGGTTTGGAAAAGTTCGTACATCTGA
AATCCCGACTTGGAGGGGTACAGCCTTCTGTAATTGTATTGATTGCAACG
GTCCGAGCATTGAAGATGCACGGCGGTGGTCCTCCTGTTTCAGCCGGCAC
GCCATTATCTTCGGTATATACTGAAGAAAACATTGAACTTGTGCAAAAGG
GCTTCGCCAACTTGAAACGCCACATAGAGCATGCAAACCAATATGGAGTA
CCCGTCGTTGTGTGCTGTAATCGATTCCATACGGACAGCGATAAAGAGCT
TGAGTGCATCATTGAGTTATCAAAAGATGCCGGTGCATTTGATGCTGTTG
TTTCGAATCATTGGGAGGAAGGGGGCAAAGGAGCCATTGATTTGGCAAAT
TCTGTCGTTAATGCGAGTAAGGCCCCTGGTAAGAGCTTTCGATTCATATA
CGAGGATAGCGAACCGTTGCGAAAGAAGATAGAAACAGTGGCGACCAAAG
TGTACGGAGCGGACGGTGTCGAGTTCTCCGAGAAGGCAAGTCAAAGGCTT
GATCTGTACGAGAAGAAAGGGTTTGGTCAAATGCCAATATGTATCGCTAA
GACGCAGTACAGTCTATCTGCTGACGCGTCTTTGAAGGGTGCACCAAAAG
GTTTTGTGCTGCCGGTAAGGGAAGTGCGGTTGAGTGCCGGTGCTGGATTT
GTGTTGGTCATATGCGGCAACATCCAGACAATGCCAGGATTACCGACACG
CCCTTCCTACTATGACGTAGACATTGATACCGAAACGGGGCGAGTCATTG
GACTCATGTAA
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Coding sequence (CDS) from alignment at tig00000894_pilon:58493..60403-

>Ggra11028.t1 ID=Ggra11028.t1|Name=Ggra11028.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1911bp|location=Sequence derived from alignment at tig00000894_pilon:58493..60403- (Gracilaria gracilis GNS1m male)
ATGGTCACTACTGGCCGCAAGGTCAAACCAACATCCCCTGTTCAATCTGA
CATTGAGATTGCGCAGTCTGTATCGATACAGCCTATAACCCATATTGCAG
AAGGGGCAGGCATCCTTGCGGAGGAGCTTATTTCGTACGGCACAACAAAG
GCAAAGGTTTCATTGTCTGCACGAAATCGTCTTGCCAATTCCCCTGATGG
CCATCTTGTTATCGTTGCGGGTATAAATCCGACATCCCTGGGCGAAGGTA
AGAGTACCACTACTATCGGCCTCAGCCAAGCACTTGGAGCACACATAAAC
AAAAATGTGTTCACCTGTATCAGGCAACCAAGCCAGGGCCCCACCTTTGG
CATAAAAGGGGGAGCGGCTGGAGGTGGCTGGAGTCAAGTCATTCCCATGG
ACGATTTCAACTTGCATCTAACTGGCGACATCCACGCAATATCTGCCGCG
AATAACTTGCTCGCTGCCGCAATTGACACTCGTATACTCCACGAAAGGAA
CCAAACTGATGAAGCACTTTTCGGGAGACTTTGTCCGTTGAACGCGAAAG
ATGGCTCTCGTCGTTTTGCTCGCAACATGTTTCCCCGTTTGAAGAAGCTG
GGCATAACCACTAACGACCCAAATGAACTCACTCCGGAAGATATTTCAAG
GTTTGTGCGCCTCGACATAAATCCGGATACAATTCAATGGAATCGCGTTC
TAGATGTGAACGATCGCTATCTCCGCTCTTTGACGATTGGGAAATCCCCT
ACTGAAAAAGGCTACGTCCGCGATTCAAGTTTCGACATCACGGTGGCTTC
AGAGATTATGGCAATTCTCTCCCTGGCAACCAGTCTCAAGGATTTGAGAG
AACGTCTTGGGCGTATAGTGGTTGCCGAATCAAACACAGGAGAATTGATT
ACAGCTGAAGATCTTGGTGTTGCAGGTGCACTCACAGTTTTAATGAAGGA
TGCTTTAATGCCAAACCTGCTACAAACACTCGAGGGAACACCAACATTTG
TCCACGCCGGACCCTTTGCCAACATTGCTTCCGGAAATTCATCCGTAATA
GCAGACCAGTTGGCTCTGAAGCTAGTGGGACCCGATGGCCTTGTAATAAC
GGAAGCTGGCTTCGGGTCTGAAATCGGTTTGGAAAAGTTCGTACATCTGA
AATCCCGACTTGGAGGGGTACAGCCTTCTGTAATTGTATTGATTGCAACG
GTCCGAGCATTGAAGATGCACGGCGGTGGTCCTCCTGTTTCAGCCGGCAC
GCCATTATCTTCGGTATATACTGAAGAAAACATTGAACTTGTGCAAAAGG
GCTTCGCCAACTTGAAACGCCACATAGAGCATGCAAACCAATATGGAGTA
CCCGTCGTTGTGTGCTGTAATCGATTCCATACGGACAGCGATAAAGAGCT
TGAGTGCATCATTGAGTTATCAAAAGATGCCGGTGCATTTGATGCTGTTG
TTTCGAATCATTGGGAGGAAGGGGGCAAAGGAGCCATTGATTTGGCAAAT
TCTGTCGTTAATGCGAGTAAGGCCCCTGGTAAGAGCTTTCGATTCATATA
CGAGGATAGCGAACCGTTGCGAAAGAAGATAGAAACAGTGGCGACCAAAG
TGTACGGAGCGGACGGTGTCGAGTTCTCCGAGAAGGCAAGTCAAAGGCTT
GATCTGTACGAGAAGAAAGGGTTTGGTCAAATGCCAATATGTATCGCTAA
GACGCAGTACAGTCTATCTGCTGACGCGTCTTTGAAGGGTGCACCAAAAG
GTTTTGTGCTGCCGGTAAGGGAAGTGCGGTTGAGTGCCGGTGCTGGATTT
GTGTTGGTCATATGCGGCAACATCCAGACAATGCCAGGATTACCGACACG
CCCTTCCTACTATGACGTAGACATTGATACCGAAACGGGGCGAGTCATTG
GACTCATGTAA
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