Ggra11027.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11027.t1
Unique NameGgra11027.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:57487..58320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11027Ggra11027Gracilaria gracilis GNS1m malegenetig00000894_pilon 57487..58320 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11027.t1.start1Ggra11027.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 57487..57489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11027.t1.CDS1Ggra11027.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 57487..58320 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11027.t1.exon1Ggra11027.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 57487..58320 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11027.t1.stop1Ggra11027.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 58318..58320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11027.t1Ggra11027.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 57487..58320 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11027.t1 ID=Ggra11027.t1|Name=Ggra11027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MPTAAVPGYRQSYIEKDRCVRNSTAVKIPGVDMMQGFTLSKAEFEDLFLQ
TAENVDDAGHTRPGARQKPARFRRKPQRRSPDPSDIDSDSDPSFRPFRGA
AKLMDPNINSAEEAAHYADLCRKHAGSLQRCIPPDYDGAGEFFEKAVDAR
AKHGMFCTSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARSA
RKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKNKLSDDNVRVAIDG
LSNNLRAQERPDEVDAVVKRHFLGALD*
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spliced messenger RNA

>Ggra11027.t1 ID=Ggra11027.t1|Name=Ggra11027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000894_pilon:57487..58320+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAACCGCCGCTGTTCCCGGCTATCGCCAGTCCTACATCGAGAAGGA
CCGATGCGTGCGAAATAGCACCGCCGTCAAGATCCCCGGCGTCGATATGA
TGCAGGGTTTCACCTTGAGCAAGGCCGAGTTCGAGGACCTCTTCCTGCAA
ACCGCCGAGAACGTTGACGACGCCGGTCACACCCGTCCCGGAGCTCGGCA
GAAGCCCGCCCGTTTTCGGCGCAAGCCCCAACGGAGGTCACCGGATCCGT
CCGATATCGACTCTGATTCGGACCCTAGCTTCCGTCCTTTTCGTGGTGCT
GCAAAGCTCATGGATCCGAACATCAACTCTGCGGAAGAGGCCGCGCACTA
TGCCGATCTTTGTAGGAAGCATGCTGGGTCGTTGCAGCGTTGCATACCCC
CGGATTACGATGGCGCCGGAGAATTTTTTGAGAAGGCTGTCGATGCACGA
GCAAAGCACGGGATGTTTTGTACCTCGGATAATGCCGATGCTCATGTTGA
GTACGCGCAGAATCTGAGCAAGAGAGGGCTCACTCCGGAGGCAGAATATC
ACTTGCGTAGTGCTGCTGATATATATCGTATGTTGGACGCGCGATCCGCA
CGAAAGTATGGCGATGTTCTGCTCTACATGGCCGTTGTCATTGACCGCCA
GGGCCGTCTGGCTGAAGCCGAGAATTTTTATAGGTCCGCGTTGGCTGTAT
ATCGGAAGAATAAGCTATCAGATGACAATGTCAGGGTGGCTATTGATGGA
TTGAGTAACAACCTTCGCGCGCAAGAGCGACCAGATGAGGTTGATGCTGT
TGTGAAAAGGCATTTCTTGGGCGCATTGGATTGA
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protein sequence of Ggra11027.t1

>Ggra11027.t1 ID=Ggra11027.t1|Name=Ggra11027.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MPTAAVPGYRQSYIEKDRCVRNSTAVKIPGVDMMQGFTLSKAEFEDLFLQ
TAENVDDAGHTRPGARQKPARFRRKPQRRSPDPSDIDSDSDPSFRPFRGA
AKLMDPNINSAEEAAHYADLCRKHAGSLQRCIPPDYDGAGEFFEKAVDAR
AKHGMFCTSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARSA
RKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKNKLSDDNVRVAIDG
LSNNLRAQERPDEVDAVVKRHFLGALD*
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mRNA from alignment at tig00000894_pilon:57487..58320+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11027.t1 ID=Ggra11027.t1|Name=Ggra11027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000894_pilon:57487..58320+ (Gracilaria gracilis GNS1m male)
ATGCCAACCGCCGCTGTTCCCGGCTATCGCCAGTCCTACATCGAGAAGGA
CCGATGCGTGCGAAATAGCACCGCCGTCAAGATCCCCGGCGTCGATATGA
TGCAGGGTTTCACCTTGAGCAAGGCCGAGTTCGAGGACCTCTTCCTGCAA
ACCGCCGAGAACGTTGACGACGCCGGTCACACCCGTCCCGGAGCTCGGCA
GAAGCCCGCCCGTTTTCGGCGCAAGCCCCAACGGAGGTCACCGGATCCGT
CCGATATCGACTCTGATTCGGACCCTAGCTTCCGTCCTTTTCGTGGTGCT
GCAAAGCTCATGGATCCGAACATCAACTCTGCGGAAGAGGCCGCGCACTA
TGCCGATCTTTGTAGGAAGCATGCTGGGTCGTTGCAGCGTTGCATACCCC
CGGATTACGATGGCGCCGGAGAATTTTTTGAGAAGGCTGTCGATGCACGA
GCAAAGCACGGGATGTTTTGTACCTCGGATAATGCCGATGCTCATGTTGA
GTACGCGCAGAATCTGAGCAAGAGAGGGCTCACTCCGGAGGCAGAATATC
ACTTGCGTAGTGCTGCTGATATATATCGTATGTTGGACGCGCGATCCGCA
CGAAAGTATGGCGATGTTCTGCTCTACATGGCCGTTGTCATTGACCGCCA
GGGCCGTCTGGCTGAAGCCGAGAATTTTTATAGGTCCGCGTTGGCTGTAT
ATCGGAAGAATAAGCTATCAGATGACAATGTCAGGGTGGCTATTGATGGA
TTGAGTAACAACCTTCGCGCGCAAGAGCGACCAGATGAGGTTGATGCTGT
TGTGAAAAGGCATTTCTTGGGCGCATTGGATTGA
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Coding sequence (CDS) from alignment at tig00000894_pilon:57487..58320+

>Ggra11027.t1 ID=Ggra11027.t1|Name=Ggra11027.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000894_pilon:57487..58320+ (Gracilaria gracilis GNS1m male)
ATGCCAACCGCCGCTGTTCCCGGCTATCGCCAGTCCTACATCGAGAAGGA
CCGATGCGTGCGAAATAGCACCGCCGTCAAGATCCCCGGCGTCGATATGA
TGCAGGGTTTCACCTTGAGCAAGGCCGAGTTCGAGGACCTCTTCCTGCAA
ACCGCCGAGAACGTTGACGACGCCGGTCACACCCGTCCCGGAGCTCGGCA
GAAGCCCGCCCGTTTTCGGCGCAAGCCCCAACGGAGGTCACCGGATCCGT
CCGATATCGACTCTGATTCGGACCCTAGCTTCCGTCCTTTTCGTGGTGCT
GCAAAGCTCATGGATCCGAACATCAACTCTGCGGAAGAGGCCGCGCACTA
TGCCGATCTTTGTAGGAAGCATGCTGGGTCGTTGCAGCGTTGCATACCCC
CGGATTACGATGGCGCCGGAGAATTTTTTGAGAAGGCTGTCGATGCACGA
GCAAAGCACGGGATGTTTTGTACCTCGGATAATGCCGATGCTCATGTTGA
GTACGCGCAGAATCTGAGCAAGAGAGGGCTCACTCCGGAGGCAGAATATC
ACTTGCGTAGTGCTGCTGATATATATCGTATGTTGGACGCGCGATCCGCA
CGAAAGTATGGCGATGTTCTGCTCTACATGGCCGTTGTCATTGACCGCCA
GGGCCGTCTGGCTGAAGCCGAGAATTTTTATAGGTCCGCGTTGGCTGTAT
ATCGGAAGAATAAGCTATCAGATGACAATGTCAGGGTGGCTATTGATGGA
TTGAGTAACAACCTTCGCGCGCAAGAGCGACCAGATGAGGTTGATGCTGT
TGTGAAAAGGCATTTCTTGGGCGCATTGGATTGA
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