Ggra11025.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11025.t1
Unique Name	Ggra11025.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000894_pilon	contig	tig00000894_pilon:36738..37757 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	77586.LPERR03G02110.1
Max annot lvl	35493\|Streptophyta
Evalue	6.3e-21
EggNOG OGs	COG0624@1\|root,KOG2275@2759\|Eukaryota,37Q0X@33090\|Viridiplantae,3GEX3@35493\|Streptophyta,3KSFJ@4447\|Liliopsida,3IC2R@38820\|Poales
Description	aminoacylase activity
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11025	Ggra11025	Gracilaria gracilis GNS1m male	gene	tig00000894_pilon 36738..37757 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11025.t1.start1	Ggra11025.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000894_pilon 36738..36740 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11025.t1.CDS1	Ggra11025.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000894_pilon 36738..37757 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11025.t1.exon1	Ggra11025.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000894_pilon 36738..37757 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11025.t1.stop1	Ggra11025.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000894_pilon 37755..37757 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11025.t1	Ggra11025.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000894_pilon 36738..37757 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000894_pilon:36738..37757+
coding sequence from alignment at tig00000894_pilon:36738..37757+

mRNA sequence

>Ggra11025.t1 ID=Ggra11025.t1|Name=Ggra11025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=340bp
MALAFNTSTLILGTKNCRFQNSWASCKTYHVRTYSSKHSRVTFPHMKQSG
IETSVLGASEGGQKRPASPQKSFGFDDEGLKAATDGEWFGFEATFNSDGT
LLSIPDRYVPDEFREWGVAPNGFDTVTSSRVTEGTLYLKRTRALPSVGCE
ADAVIPEVSVLKLEGSGNGGFSDGCLSCGPVKLGKSPLCTILANGKHRVQ
LSFRLTENFGDVTVFSESWGGEFCDGQVLPGCGGGDRFAEGPKMDVASLF
GSWEYEAEEVVFSEGSTIRQTRGVLSRESMEGELLTLPKGLLLRLLREGN
SVLVEAGWLSGDTRIVLERHYEEGNLIRIKKSVERRIEV*

spliced messenger RNA

>Ggra11025.t1 ID=Ggra11025.t1|Name=Ggra11025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000894_pilon:36738..37757+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTGGCTTTCAACACCTCTACTCTAATCCTCGGTACGAAAAACTG
CCGGTTTCAGAACTCGTGGGCTTCTTGCAAGACCTATCATGTGAGAACAT
ACTCTTCGAAGCACTCTCGCGTCACATTCCCGCACATGAAACAGAGTGGA
ATAGAAACGTCAGTTCTCGGAGCTTCTGAAGGAGGACAGAAACGTCCTGC
TTCTCCTCAGAAGTCGTTCGGTTTTGATGACGAAGGTCTAAAAGCGGCGA
CGGACGGAGAATGGTTTGGTTTCGAGGCTACATTCAATTCAGACGGAACT
TTGCTTTCAATTCCAGACCGTTACGTTCCTGACGAGTTTCGTGAGTGGGG
GGTTGCACCGAATGGATTTGATACAGTTACCAGCTCCAGGGTCACCGAAG
GCACCCTTTATTTGAAACGCACGAGAGCGTTGCCAAGCGTCGGTTGCGAA
GCAGATGCAGTAATACCGGAGGTTTCAGTTCTGAAGTTGGAAGGGTCAGG
GAACGGAGGGTTCTCGGATGGATGTTTAAGTTGTGGGCCTGTAAAACTTG
GTAAATCTCCCCTGTGCACTATTCTTGCAAATGGTAAGCATCGAGTGCAG
CTGAGTTTCCGCCTAACTGAGAACTTTGGAGACGTCACCGTTTTCAGTGA
AAGTTGGGGCGGTGAATTTTGCGATGGGCAGGTTTTGCCGGGTTGCGGAG
GTGGGGATCGATTCGCCGAAGGACCCAAGATGGATGTTGCCAGCTTATTT
GGATCTTGGGAATATGAAGCAGAGGAAGTAGTCTTTTCGGAAGGTTCCAC
TATTCGACAAACGAGGGGAGTATTGAGTAGGGAAAGTATGGAAGGGGAAC
TCTTGACGCTTCCCAAAGGACTATTGCTGCGTTTACTGCGGGAGGGAAAT
TCAGTGCTTGTCGAAGCGGGATGGCTCTCTGGTGATACTCGCATTGTACT
CGAGAGGCATTATGAAGAAGGCAATTTGATCAGAATCAAGAAGAGCGTTG
AACGTCGCATAGAGGTTTAG

protein sequence of Ggra11025.t1

>Ggra11025.t1 ID=Ggra11025.t1|Name=Ggra11025.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MALAFNTSTLILGTKNCRFQNSWASCKTYHVRTYSSKHSRVTFPHMKQSG
IETSVLGASEGGQKRPASPQKSFGFDDEGLKAATDGEWFGFEATFNSDGT
LLSIPDRYVPDEFREWGVAPNGFDTVTSSRVTEGTLYLKRTRALPSVGCE
ADAVIPEVSVLKLEGSGNGGFSDGCLSCGPVKLGKSPLCTILANGKHRVQ
LSFRLTENFGDVTVFSESWGGEFCDGQVLPGCGGGDRFAEGPKMDVASLF
GSWEYEAEEVVFSEGSTIRQTRGVLSRESMEGELLTLPKGLLLRLLREGN
SVLVEAGWLSGDTRIVLERHYEEGNLIRIKKSVERRIEV*

mRNA from alignment at tig00000894_pilon:36738..37757+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11025.t1 ID=Ggra11025.t1|Name=Ggra11025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000894_pilon:36738..37757+ (Gracilaria gracilis GNS1m male)
ATGGCCTTGGCTTTCAACACCTCTACTCTAATCCTCGGTACGAAAAACTG
CCGGTTTCAGAACTCGTGGGCTTCTTGCAAGACCTATCATGTGAGAACAT
ACTCTTCGAAGCACTCTCGCGTCACATTCCCGCACATGAAACAGAGTGGA
ATAGAAACGTCAGTTCTCGGAGCTTCTGAAGGAGGACAGAAACGTCCTGC
TTCTCCTCAGAAGTCGTTCGGTTTTGATGACGAAGGTCTAAAAGCGGCGA
CGGACGGAGAATGGTTTGGTTTCGAGGCTACATTCAATTCAGACGGAACT
TTGCTTTCAATTCCAGACCGTTACGTTCCTGACGAGTTTCGTGAGTGGGG
GGTTGCACCGAATGGATTTGATACAGTTACCAGCTCCAGGGTCACCGAAG
GCACCCTTTATTTGAAACGCACGAGAGCGTTGCCAAGCGTCGGTTGCGAA
GCAGATGCAGTAATACCGGAGGTTTCAGTTCTGAAGTTGGAAGGGTCAGG
GAACGGAGGGTTCTCGGATGGATGTTTAAGTTGTGGGCCTGTAAAACTTG
GTAAATCTCCCCTGTGCACTATTCTTGCAAATGGTAAGCATCGAGTGCAG
CTGAGTTTCCGCCTAACTGAGAACTTTGGAGACGTCACCGTTTTCAGTGA
AAGTTGGGGCGGTGAATTTTGCGATGGGCAGGTTTTGCCGGGTTGCGGAG
GTGGGGATCGATTCGCCGAAGGACCCAAGATGGATGTTGCCAGCTTATTT
GGATCTTGGGAATATGAAGCAGAGGAAGTAGTCTTTTCGGAAGGTTCCAC
TATTCGACAAACGAGGGGAGTATTGAGTAGGGAAAGTATGGAAGGGGAAC
TCTTGACGCTTCCCAAAGGACTATTGCTGCGTTTACTGCGGGAGGGAAAT
TCAGTGCTTGTCGAAGCGGGATGGCTCTCTGGTGATACTCGCATTGTACT
CGAGAGGCATTATGAAGAAGGCAATTTGATCAGAATCAAGAAGAGCGTTG
AACGTCGCATAGAGGTTTAG

Coding sequence (CDS) from alignment at tig00000894_pilon:36738..37757+

>Ggra11025.t1 ID=Ggra11025.t1|Name=Ggra11025.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000894_pilon:36738..37757+ (Gracilaria gracilis GNS1m male)
ATGGCCTTGGCTTTCAACACCTCTACTCTAATCCTCGGTACGAAAAACTG
CCGGTTTCAGAACTCGTGGGCTTCTTGCAAGACCTATCATGTGAGAACAT
ACTCTTCGAAGCACTCTCGCGTCACATTCCCGCACATGAAACAGAGTGGA
ATAGAAACGTCAGTTCTCGGAGCTTCTGAAGGAGGACAGAAACGTCCTGC
TTCTCCTCAGAAGTCGTTCGGTTTTGATGACGAAGGTCTAAAAGCGGCGA
CGGACGGAGAATGGTTTGGTTTCGAGGCTACATTCAATTCAGACGGAACT
TTGCTTTCAATTCCAGACCGTTACGTTCCTGACGAGTTTCGTGAGTGGGG
GGTTGCACCGAATGGATTTGATACAGTTACCAGCTCCAGGGTCACCGAAG
GCACCCTTTATTTGAAACGCACGAGAGCGTTGCCAAGCGTCGGTTGCGAA
GCAGATGCAGTAATACCGGAGGTTTCAGTTCTGAAGTTGGAAGGGTCAGG
GAACGGAGGGTTCTCGGATGGATGTTTAAGTTGTGGGCCTGTAAAACTTG
GTAAATCTCCCCTGTGCACTATTCTTGCAAATGGTAAGCATCGAGTGCAG
CTGAGTTTCCGCCTAACTGAGAACTTTGGAGACGTCACCGTTTTCAGTGA
AAGTTGGGGCGGTGAATTTTGCGATGGGCAGGTTTTGCCGGGTTGCGGAG
GTGGGGATCGATTCGCCGAAGGACCCAAGATGGATGTTGCCAGCTTATTT
GGATCTTGGGAATATGAAGCAGAGGAAGTAGTCTTTTCGGAAGGTTCCAC
TATTCGACAAACGAGGGGAGTATTGAGTAGGGAAAGTATGGAAGGGGAAC
TCTTGACGCTTCCCAAAGGACTATTGCTGCGTTTACTGCGGGAGGGAAAT
TCAGTGCTTGTCGAAGCGGGATGGCTCTCTGGTGATACTCGCATTGTACT
CGAGAGGCATTATGAAGAAGGCAATTTGATCAGAATCAAGAAGAGCGTTG
AACGTCGCATAGAGGTTTAG