Ggra11020.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11020.t1
Unique NameGgra11020.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:16775..17997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45130.XP_007694604.1
Preferred nameDIC1
PFAMsMito_carr
Max annot lvl4751|Fungi
KEGG koko:K13577
KEGG TC2.A.29.2.2,2.A.29.2.3,2.A.29.2.7
KEGG Pathwayko04964,map04964
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008272,GO:0008509,GO:0008514,GO:0015075,GO:0015103,GO:0015116,GO:0015117,GO:0015131,GO:0015140,GO:0015141,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015698,GO:0015709,GO:0015711,GO:0015729,GO:0015740,GO:0015743,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0035435,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071423,GO:0071702,GO:0072348,GO:0098656,GO:0098660,GO:0098661,GO:1901682,GO:1902356,GO:1902358,GO:1903825,GO:1905039
Evalue2.39e-61
EggNOG OGsKOG0759@1|root,KOG0759@2759|Eukaryota,38GSC@33154|Opisthokonta,3NUAB@4751|Fungi,3QM68@4890|Ascomycota,200RE@147541|Dothideomycetes,4KDG0@92860|Pleosporales
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11020Ggra11020Gracilaria gracilis GNS1m malegenetig00000894_pilon 16775..17997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11020.t1Ggra11020.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 16775..17997 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11020.t1.start1Ggra11020.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 16775..16777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11020.t1.CDS1Ggra11020.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 16775..16916 +
Ggra11020.t1.CDS2Ggra11020.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000894_pilon 16976..17275 +
Ggra11020.t1.CDS3Ggra11020.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000894_pilon 17347..17545 +
Ggra11020.t1.CDS4Ggra11020.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000894_pilon 17691..17997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11020.t1.exon1Ggra11020.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 16775..16916 +
Ggra11020.t1.exon2Ggra11020.t1.exon2Gracilaria gracilis GNS1m maleexontig00000894_pilon 16976..17275 +
Ggra11020.t1.exon3Ggra11020.t1.exon3Gracilaria gracilis GNS1m maleexontig00000894_pilon 17347..17545 +
Ggra11020.t1.exon4Ggra11020.t1.exon4Gracilaria gracilis GNS1m maleexontig00000894_pilon 17691..17997 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11020.t1.intron1Ggra11020.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000894_pilon 16917..16975 +
Ggra11020.t1.intron2Ggra11020.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000894_pilon 17276..17346 +
Ggra11020.t1.intron3Ggra11020.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000894_pilon 17546..17690 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11020.t1.stop1Ggra11020.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 17995..17997 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11020.t1 ID=Ggra11020.t1|Name=Ggra11020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MSGKDKEPTLVNDDFRVAKYQRSVPPSEHKKHPLYQQLALGGFSCAIATT
FTHPIDTVKLRIQLQGSLSGTEYRYNGLLSGLHRVAQDEGLFALYNGLSP
AILRAATYSASRLGLYEPLRTFFTETMGHEQPTFVTKVTAAVSSGAIGAF
VGNPCELIKVRMQQADTYQYKHVGDGIVRIVKEEGVTALWNGTMPAALRA
ALLTSSQLATYDHCKTHLKRYTGLEEGLPAHFGAAMTAGLVTTSVSTPAD
VVKSVVMHSKPRMHPVECTRLILRKEGFRGFLRGWTANYARLGPHTLITV
LTYENLRTAFGWNNL*
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spliced messenger RNA

>Ggra11020.t1 ID=Ggra11020.t1|Name=Ggra11020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000894_pilon:16775..17997+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTAAGGATAAGGAACCAACGTTAGTGAACGATGATTTTCGGGT
GGCAAAGTACCAGCGATCTGTTCCTCCATCGGAGCACAAGAAGCATCCTC
TGTATCAACAATTAGCATTGGGAGGGTTTTCTTGCGCAATTGCTACCACT
TTCACACACCCGATCGATACCGTAAAGCTTCGCATTCAGCTTCAGGGATC
ACTCTCTGGCACTGAGTACCGATATAACGGACTTCTATCTGGTCTACATC
GAGTTGCGCAGGATGAAGGGTTGTTTGCATTGTACAACGGTCTTTCACCC
GCTATTCTCCGAGCTGCTACGTATAGTGCGTCGCGATTGGGGTTGTACGA
ACCGCTTAGGACGTTTTTCACTGAGACTATGGGACACGAGCAACCTACTT
TTGTTACTAAAGTTACCGCCGCAGTGTCTTCTGGCGCAATTGGCGCATTC
GTAGGTAATCCGTGTGAATTAATCAAAGTTCGAATGCAGCAAGCTGATAC
CTATCAGTACAAACATGTTGGAGACGGGATTGTTCGGATTGTCAAAGAAG
AAGGTGTGACAGCATTATGGAACGGAACCATGCCTGCAGCCTTGCGAGCA
GCATTGCTTACTTCATCGCAACTAGCGACATACGATCATTGCAAAACACA
TTTGAAGCGATACACAGGTCTCGAAGAGGGCCTTCCAGCCCATTTTGGGG
CAGCTATGACGGCAGGTTTGGTCACAACTTCGGTATCGACACCGGCTGAC
GTTGTGAAATCAGTTGTAATGCACTCGAAACCGCGTATGCACCCCGTTGA
ATGCACTCGCTTAATACTACGGAAGGAAGGATTCCGAGGTTTTTTGCGAG
GCTGGACTGCCAACTACGCCCGACTTGGACCGCACACACTAATCACAGTT
TTGACTTACGAGAATCTAAGAACTGCGTTCGGTTGGAACAATTTGTGA
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protein sequence of Ggra11020.t1

>Ggra11020.t1 ID=Ggra11020.t1|Name=Ggra11020.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MSGKDKEPTLVNDDFRVAKYQRSVPPSEHKKHPLYQQLALGGFSCAIATT
FTHPIDTVKLRIQLQGSLSGTEYRYNGLLSGLHRVAQDEGLFALYNGLSP
AILRAATYSASRLGLYEPLRTFFTETMGHEQPTFVTKVTAAVSSGAIGAF
VGNPCELIKVRMQQADTYQYKHVGDGIVRIVKEEGVTALWNGTMPAALRA
ALLTSSQLATYDHCKTHLKRYTGLEEGLPAHFGAAMTAGLVTTSVSTPAD
VVKSVVMHSKPRMHPVECTRLILRKEGFRGFLRGWTANYARLGPHTLITV
LTYENLRTAFGWNNL*
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mRNA from alignment at tig00000894_pilon:16775..17997+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11020.t1 ID=Ggra11020.t1|Name=Ggra11020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1223bp|location=Sequence derived from alignment at tig00000894_pilon:16775..17997+ (Gracilaria gracilis GNS1m male)
ATGTCAGGTAAGGATAAGGAACCAACGTTAGTGAACGATGATTTTCGGGT
GGCAAAGTACCAGCGATCTGTTCCTCCATCGGAGCACAAGAAGCATCCTC
TGTATCAACAATTAGCATTGGGAGGGTTTTCTTGCGCAATTGGTACGTGA
AGATGGTTCTTTTCCCAATGCTATACAGCTGCTAATCAATGTCACCACCA
GCTACCACTTTCACACACCCGATCGATACCGTAAAGCTTCGCATTCAGCT
TCAGGGATCACTCTCTGGCACTGAGTACCGATATAACGGACTTCTATCTG
GTCTACATCGAGTTGCGCAGGATGAAGGGTTGTTTGCATTGTACAACGGT
CTTTCACCCGCTATTCTCCGAGCTGCTACGTATAGTGCGTCGCGATTGGG
GTTGTACGAACCGCTTAGGACGTTTTTCACTGAGACTATGGGACACGAGC
AACCTACTTTTGTTACTAAAGTTACCGCCGCAGTGTCTTCTGGCGCAATT
GGTAGGTGATCAAGTTGAGTGCTAACACCGTATTTTGATATCTAACATGC
TTGGTCGTTTTGAATGTCATAGGCGCATTCGTAGGTAATCCGTGTGAATT
AATCAAAGTTCGAATGCAGCAAGCTGATACCTATCAGTACAAACATGTTG
GAGACGGGATTGTTCGGATTGTCAAAGAAGAAGGTGTGACAGCATTATGG
AACGGAACCATGCCTGCAGCCTTGCGAGCAGCATTGCTTACTTCATCGCA
ACTAGCGACATACGATCATTGGTACGTGTAGACAAGTGACAGCTTCTTTA
AACTCAACTGAGAGTTTCCGCCTGACTACTTCTGATGAACGAAGTATCAT
CTAACCGCACTGGGCATAACACTTTCTCTACAATTTTATCTTTGCCTTCG
AATCTATCCCGCATAGCAAAACACATTTGAAGCGATACACAGGTCTCGAA
GAGGGCCTTCCAGCCCATTTTGGGGCAGCTATGACGGCAGGTTTGGTCAC
AACTTCGGTATCGACACCGGCTGACGTTGTGAAATCAGTTGTAATGCACT
CGAAACCGCGTATGCACCCCGTTGAATGCACTCGCTTAATACTACGGAAG
GAAGGATTCCGAGGTTTTTTGCGAGGCTGGACTGCCAACTACGCCCGACT
TGGACCGCACACACTAATCACAGTTTTGACTTACGAGAATCTAAGAACTG
CGTTCGGTTGGAACAATTTGTGA
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Coding sequence (CDS) from alignment at tig00000894_pilon:16775..17997+

>Ggra11020.t1 ID=Ggra11020.t1|Name=Ggra11020.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000894_pilon:16775..17997+ (Gracilaria gracilis GNS1m male)
ATGTCAGGTAAGGATAAGGAACCAACGTTAGTGAACGATGATTTTCGGGT
GGCAAAGTACCAGCGATCTGTTCCTCCATCGGAGCACAAGAAGCATCCTC
TGTATCAACAATTAGCATTGGGAGGGTTTTCTTGCGCAATTGCTACCACT
TTCACACACCCGATCGATACCGTAAAGCTTCGCATTCAGCTTCAGGGATC
ACTCTCTGGCACTGAGTACCGATATAACGGACTTCTATCTGGTCTACATC
GAGTTGCGCAGGATGAAGGGTTGTTTGCATTGTACAACGGTCTTTCACCC
GCTATTCTCCGAGCTGCTACGTATAGTGCGTCGCGATTGGGGTTGTACGA
ACCGCTTAGGACGTTTTTCACTGAGACTATGGGACACGAGCAACCTACTT
TTGTTACTAAAGTTACCGCCGCAGTGTCTTCTGGCGCAATTGGCGCATTC
GTAGGTAATCCGTGTGAATTAATCAAAGTTCGAATGCAGCAAGCTGATAC
CTATCAGTACAAACATGTTGGAGACGGGATTGTTCGGATTGTCAAAGAAG
AAGGTGTGACAGCATTATGGAACGGAACCATGCCTGCAGCCTTGCGAGCA
GCATTGCTTACTTCATCGCAACTAGCGACATACGATCATTGCAAAACACA
TTTGAAGCGATACACAGGTCTCGAAGAGGGCCTTCCAGCCCATTTTGGGG
CAGCTATGACGGCAGGTTTGGTCACAACTTCGGTATCGACACCGGCTGAC
GTTGTGAAATCAGTTGTAATGCACTCGAAACCGCGTATGCACCCCGTTGA
ATGCACTCGCTTAATACTACGGAAGGAAGGATTCCGAGGTTTTTTGCGAG
GCTGGACTGCCAACTACGCCCGACTTGGACCGCACACACTAATCACAGTT
TTGACTTACGAGAATCTAAGAACTGCGTTCGGTTGGAACAATTTGTGA
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