Ggra11018.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11018.t1
Unique NameGgra11018.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length859
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000224_piloncontigtig00000224_pilon:103684..106260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11018Ggra11018Gracilaria gracilis GNS1m malegenetig00000224_pilon 103684..106260 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11018.t1.stop1Ggra11018.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000224_pilon 103684..103686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11018.t1.CDS1Ggra11018.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000224_pilon 103684..106260 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11018.t1.exon1Ggra11018.t1.exon1Gracilaria gracilis GNS1m maleexontig00000224_pilon 103684..106260 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11018.t1.start1Ggra11018.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000224_pilon 106258..106260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11018.t1Ggra11018.t1Gracilaria gracilis GNS1m malepolypeptidetig00000224_pilon 103684..106260 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11018.t1 ID=Ggra11018.t1|Name=Ggra11018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=859bp
MDSDLHTCLRAAIAQGVPTTEILRNICNTQSRILPPAKDNVDPKLKGLGT
LYAELGLKGVEAVKLGLSRKIRTTRADARNVISEWEARKLSCCFSESVES
LLKLADTHLLAVSYKHEEEARWKRKGKNLIAKMSDRDQEALVNVIEGCSK
IPNVKYVILWCDQVISTRQKDKGRNTLGWYNSGLVPYACLRVLKLSPHIS
HEILESRVWLRAERSLGRLGWGTVEVADAVSGLLGDQGEFVSVSRIMNRI
SGMILSGFWPKDLGYWKDDYIQMKKWALCVLSKMQFSVLPAPIFDDVEEV
DNLTILSMMDEFAFVPRGLEYAEKPVHTDDRAFFLKATAWNIYTQDVWNV
EKKTVSHYMGCIRLSYMFTWWASECMALIFGLLKGEDRATVILAVKDGDG
YLLHRKAVDHAVYSHADQHPTEGALCALEGVARNYGLVSRTWSLLYSSSD
DNDVVYTDPVLRQALGVWPTRADCLVPQVYIGLTTKLYRSAAVKVSARQT
VINRFLQIHKSWNKHIREEYDNHISVTDTAAGTIWLEGFSKDKVSFGFYD
YLTRGLILGESGFSNETVMLPSKWECIQEIRRIACSSSKDVQVLADEIFG
SATEMNCDEFVRLKDVACFIVRGGFATCMNGLGLYSFLCSVAMHRGYWGT
RVHARDGKMQIIFSNEHGDVRVAQRETILSGFQTLGLVRPEDAKAVLDVS
VPIEDDAEEHGQYMYWKSMGSNTTRHQMQALFSNSVYKVDEGRHILLVDM
SIVEGMEGQEDSVVDVESISLSVDRSIGYLSRALRGTGLRVSATGRVESG
TVGESVLEPNIFSQEGRERLWDAIRRIDEIQERARAGQAESLRRQREILS
SQNNGDSA*
back to top

spliced messenger RNA

>Ggra11018.t1 ID=Ggra11018.t1|Name=Ggra11018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2577bp|location=Sequence derived from alignment at tig00000224_pilon:103684..106260- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTGATCTTCACACATGTTTAAGAGCAGCAATAGCTCAAGGCGT
TCCCACCACCGAAATCCTCCGTAACATTTGCAATACCCAATCGAGAATTC
TACCTCCCGCAAAGGATAACGTGGATCCAAAGTTGAAAGGCCTTGGGACC
TTGTACGCTGAATTGGGGTTGAAGGGTGTGGAAGCGGTCAAACTTGGCCT
TTCTCGGAAAATTCGAACAACTCGTGCAGATGCCCGAAATGTTATCTCAG
AATGGGAAGCGAGAAAACTCTCTTGTTGCTTCTCGGAAAGTGTTGAATCT
CTTCTCAAGCTGGCTGATACGCATTTACTTGCCGTTTCTTACAAGCATGA
GGAAGAAGCAAGATGGAAACGAAAAGGTAAGAACTTGATTGCGAAGATGT
CCGACAGGGATCAGGAGGCTCTAGTGAATGTCATTGAGGGATGCTCGAAG
ATTCCCAATGTGAAGTATGTAATTCTCTGGTGCGATCAAGTCATATCCAC
CAGACAAAAAGACAAGGGAAGGAACACTTTGGGTTGGTACAATTCTGGGC
TCGTCCCATATGCATGTCTTCGAGTTCTCAAGCTTTCTCCTCACATATCT
CACGAAATCCTAGAGTCCCGTGTCTGGCTGAGGGCCGAGCGTTCGTTAGG
TCGACTGGGATGGGGCACTGTGGAAGTAGCTGATGCCGTTTCTGGGCTCT
TGGGAGATCAGGGAGAGTTTGTATCCGTTAGCAGGATCATGAACAGAATT
TCAGGAATGATTCTCAGTGGTTTCTGGCCGAAAGACTTAGGATATTGGAA
AGATGACTACATTCAAATGAAGAAATGGGCTCTCTGCGTACTATCGAAAA
TGCAGTTTTCAGTTCTACCGGCCCCCATTTTCGATGACGTCGAGGAAGTG
GATAACCTAACCATACTCTCGATGATGGATGAATTCGCATTTGTGCCAAG
AGGTTTAGAATACGCTGAGAAACCGGTGCATACTGACGATAGGGCATTCT
TCTTGAAAGCCACTGCCTGGAATATATATACTCAAGATGTCTGGAACGTT
GAGAAGAAAACAGTTTCCCACTACATGGGCTGCATTAGGCTCTCCTATAT
GTTTACATGGTGGGCTAGTGAATGCATGGCATTAATCTTCGGGTTGCTGA
AAGGAGAAGATAGGGCAACTGTTATTCTCGCCGTGAAAGACGGAGATGGC
TACTTGCTGCACAGAAAGGCGGTGGACCACGCGGTCTATTCTCATGCAGA
TCAACACCCCACTGAGGGAGCACTGTGTGCGTTAGAGGGTGTTGCACGAA
ATTATGGATTAGTTTCTCGGACTTGGTCACTGTTGTATAGTTCTTCTGAT
GATAACGATGTAGTCTATACCGATCCCGTTCTAAGACAGGCGCTGGGAGT
TTGGCCAACACGTGCCGATTGCCTTGTTCCGCAGGTTTACATTGGTTTGA
CCACAAAACTTTACCGTTCTGCAGCTGTAAAAGTGAGTGCGAGACAAACA
GTTATAAATCGATTTCTTCAGATCCACAAATCTTGGAACAAGCACATAAG
AGAAGAATACGATAACCACATTTCTGTCACGGATACCGCAGCTGGCACTA
TATGGTTGGAGGGATTCTCAAAAGACAAGGTTTCGTTTGGCTTCTATGAC
TATCTAACACGAGGACTTATACTCGGAGAAAGCGGCTTCTCGAATGAAAC
TGTGATGCTTCCGAGCAAGTGGGAATGTATTCAAGAAATACGAAGAATTG
CCTGTTCTAGCTCGAAAGATGTCCAAGTCCTTGCAGATGAAATATTTGGA
TCAGCCACTGAGATGAATTGCGATGAATTTGTCCGGCTCAAAGACGTTGC
GTGTTTCATAGTTCGAGGGGGATTTGCTACTTGTATGAACGGACTAGGAC
TTTACAGTTTTCTCTGTAGTGTGGCAATGCACAGAGGATACTGGGGAACT
CGCGTCCACGCCCGTGACGGCAAGATGCAGATTATCTTCAGCAACGAGCA
TGGTGATGTGCGTGTTGCACAGAGGGAAACGATCCTTTCGGGATTCCAGA
CCCTCGGACTCGTCAGACCAGAAGATGCGAAAGCGGTACTAGATGTTTCG
GTACCAATAGAGGATGACGCGGAAGAACATGGACAGTACATGTACTGGAA
ATCGATGGGCTCCAACACGACAAGACACCAGATGCAAGCTCTGTTTTCGA
ACTCAGTGTACAAAGTTGACGAAGGTAGACATATTTTGCTGGTTGATATG
TCAATAGTCGAAGGAATGGAAGGTCAAGAAGACTCGGTGGTTGATGTTGA
AAGTATTTCTTTATCGGTGGATAGGTCAATTGGTTATTTGTCGAGGGCCT
TGCGGGGAACGGGACTAAGAGTATCCGCAACTGGTCGCGTCGAATCTGGA
ACTGTTGGAGAATCCGTGTTAGAACCAAACATCTTCTCACAGGAAGGCCG
TGAACGTTTATGGGACGCAATTAGGAGAATCGATGAGATACAGGAAAGGG
CCAGAGCTGGCCAAGCGGAATCGCTGCGGAGGCAAAGGGAAATCCTTAGC
AGTCAGAACAACGGCGACAGCGCTTAG
back to top

protein sequence of Ggra11018.t1

>Ggra11018.t1 ID=Ggra11018.t1|Name=Ggra11018.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=859bp
MDSDLHTCLRAAIAQGVPTTEILRNICNTQSRILPPAKDNVDPKLKGLGT
LYAELGLKGVEAVKLGLSRKIRTTRADARNVISEWEARKLSCCFSESVES
LLKLADTHLLAVSYKHEEEARWKRKGKNLIAKMSDRDQEALVNVIEGCSK
IPNVKYVILWCDQVISTRQKDKGRNTLGWYNSGLVPYACLRVLKLSPHIS
HEILESRVWLRAERSLGRLGWGTVEVADAVSGLLGDQGEFVSVSRIMNRI
SGMILSGFWPKDLGYWKDDYIQMKKWALCVLSKMQFSVLPAPIFDDVEEV
DNLTILSMMDEFAFVPRGLEYAEKPVHTDDRAFFLKATAWNIYTQDVWNV
EKKTVSHYMGCIRLSYMFTWWASECMALIFGLLKGEDRATVILAVKDGDG
YLLHRKAVDHAVYSHADQHPTEGALCALEGVARNYGLVSRTWSLLYSSSD
DNDVVYTDPVLRQALGVWPTRADCLVPQVYIGLTTKLYRSAAVKVSARQT
VINRFLQIHKSWNKHIREEYDNHISVTDTAAGTIWLEGFSKDKVSFGFYD
YLTRGLILGESGFSNETVMLPSKWECIQEIRRIACSSSKDVQVLADEIFG
SATEMNCDEFVRLKDVACFIVRGGFATCMNGLGLYSFLCSVAMHRGYWGT
RVHARDGKMQIIFSNEHGDVRVAQRETILSGFQTLGLVRPEDAKAVLDVS
VPIEDDAEEHGQYMYWKSMGSNTTRHQMQALFSNSVYKVDEGRHILLVDM
SIVEGMEGQEDSVVDVESISLSVDRSIGYLSRALRGTGLRVSATGRVESG
TVGESVLEPNIFSQEGRERLWDAIRRIDEIQERARAGQAESLRRQREILS
SQNNGDSA*
back to top

mRNA from alignment at tig00000224_pilon:103684..106260-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11018.t1 ID=Ggra11018.t1|Name=Ggra11018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2577bp|location=Sequence derived from alignment at tig00000224_pilon:103684..106260- (Gracilaria gracilis GNS1m male)
ATGGATTCTGATCTTCACACATGTTTAAGAGCAGCAATAGCTCAAGGCGT TCCCACCACCGAAATCCTCCGTAACATTTGCAATACCCAATCGAGAATTC TACCTCCCGCAAAGGATAACGTGGATCCAAAGTTGAAAGGCCTTGGGACC TTGTACGCTGAATTGGGGTTGAAGGGTGTGGAAGCGGTCAAACTTGGCCT TTCTCGGAAAATTCGAACAACTCGTGCAGATGCCCGAAATGTTATCTCAG AATGGGAAGCGAGAAAACTCTCTTGTTGCTTCTCGGAAAGTGTTGAATCT CTTCTCAAGCTGGCTGATACGCATTTACTTGCCGTTTCTTACAAGCATGA GGAAGAAGCAAGATGGAAACGAAAAGGTAAGAACTTGATTGCGAAGATGT CCGACAGGGATCAGGAGGCTCTAGTGAATGTCATTGAGGGATGCTCGAAG ATTCCCAATGTGAAGTATGTAATTCTCTGGTGCGATCAAGTCATATCCAC CAGACAAAAAGACAAGGGAAGGAACACTTTGGGTTGGTACAATTCTGGGC TCGTCCCATATGCATGTCTTCGAGTTCTCAAGCTTTCTCCTCACATATCT CACGAAATCCTAGAGTCCCGTGTCTGGCTGAGGGCCGAGCGTTCGTTAGG TCGACTGGGATGGGGCACTGTGGAAGTAGCTGATGCCGTTTCTGGGCTCT TGGGAGATCAGGGAGAGTTTGTATCCGTTAGCAGGATCATGAACAGAATT TCAGGAATGATTCTCAGTGGTTTCTGGCCGAAAGACTTAGGATATTGGAA AGATGACTACATTCAAATGAAGAAATGGGCTCTCTGCGTACTATCGAAAA TGCAGTTTTCAGTTCTACCGGCCCCCATTTTCGATGACGTCGAGGAAGTG GATAACCTAACCATACTCTCGATGATGGATGAATTCGCATTTGTGCCAAG AGGTTTAGAATACGCTGAGAAACCGGTGCATACTGACGATAGGGCATTCT TCTTGAAAGCCACTGCCTGGAATATATATACTCAAGATGTCTGGAACGTT GAGAAGAAAACAGTTTCCCACTACATGGGCTGCATTAGGCTCTCCTATAT GTTTACATGGTGGGCTAGTGAATGCATGGCATTAATCTTCGGGTTGCTGA AAGGAGAAGATAGGGCAACTGTTATTCTCGCCGTGAAAGACGGAGATGGC TACTTGCTGCACAGAAAGGCGGTGGACCACGCGGTCTATTCTCATGCAGA TCAACACCCCACTGAGGGAGCACTGTGTGCGTTAGAGGGTGTTGCACGAA ATTATGGATTAGTTTCTCGGACTTGGTCACTGTTGTATAGTTCTTCTGAT GATAACGATGTAGTCTATACCGATCCCGTTCTAAGACAGGCGCTGGGAGT TTGGCCAACACGTGCCGATTGCCTTGTTCCGCAGGTTTACATTGGTTTGA CCACAAAACTTTACCGTTCTGCAGCTGTAAAAGTGAGTGCGAGACAAACA GTTATAAATCGATTTCTTCAGATCCACAAATCTTGGAACAAGCACATAAG AGAAGAATACGATAACCACATTTCTGTCACGGATACCGCAGCTGGCACTA TATGGTTGGAGGGATTCTCAAAAGACAAGGTTTCGTTTGGCTTCTATGAC TATCTAACACGAGGACTTATACTCGGAGAAAGCGGCTTCTCGAATGAAAC TGTGATGCTTCCGAGCAAGTGGGAATGTATTCAAGAAATACGAAGAATTG CCTGTTCTAGCTCGAAAGATGTCCAAGTCCTTGCAGATGAAATATTTGGA TCAGCCACTGAGATGAATTGCGATGAATTTGTCCGGCTCAAAGACGTTGC GTGTTTCATAGTTCGAGGGGGATTTGCTACTTGTATGAACGGACTAGGAC TTTACAGTTTTCTCTGTAGTGTGGCAATGCACAGAGGATACTGGGGAACT CGCGTCCACGCCCGTGACGGCAAGATGCAGATTATCTTCAGCAACGAGCA TGGTGATGTGCGTGTTGCACAGAGGGAAACGATCCTTTCGGGATTCCAGA CCCTCGGACTCGTCAGACCAGAAGATGCGAAAGCGGTACTAGATGTTTCG GTACCAATAGAGGATGACGCGGAAGAACATGGACAGTACATGTACTGGAA ATCGATGGGCTCCAACACGACAAGACACCAGATGCAAGCTCTGTTTTCGA ACTCAGTGTACAAAGTTGACGAAGGTAGACATATTTTGCTGGTTGATATG TCAATAGTCGAAGGAATGGAAGGTCAAGAAGACTCGGTGGTTGATGTTGA AAGTATTTCTTTATCGGTGGATAGGTCAATTGGTTATTTGTCGAGGGCCT TGCGGGGAACGGGACTAAGAGTATCCGCAACTGGTCGCGTCGAATCTGGA ACTGTTGGAGAATCCGTGTTAGAACCAAACATCTTCTCACAGGAAGGCCG TGAACGTTTATGGGACGCAATTAGGAGAATCGATGAGATACAGGAAAGGG CCAGAGCTGGCCAAGCGGAATCGCTGCGGAGGCAAAGGGAAATCCTTAGC AGTCAGAACAACGGCGACAGCGCTTAG
back to top

Coding sequence (CDS) from alignment at tig00000224_pilon:103684..106260-

>Ggra11018.t1 ID=Ggra11018.t1|Name=Ggra11018.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2577bp|location=Sequence derived from alignment at tig00000224_pilon:103684..106260- (Gracilaria gracilis GNS1m male)
ATGGATTCTGATCTTCACACATGTTTAAGAGCAGCAATAGCTCAAGGCGT
TCCCACCACCGAAATCCTCCGTAACATTTGCAATACCCAATCGAGAATTC
TACCTCCCGCAAAGGATAACGTGGATCCAAAGTTGAAAGGCCTTGGGACC
TTGTACGCTGAATTGGGGTTGAAGGGTGTGGAAGCGGTCAAACTTGGCCT
TTCTCGGAAAATTCGAACAACTCGTGCAGATGCCCGAAATGTTATCTCAG
AATGGGAAGCGAGAAAACTCTCTTGTTGCTTCTCGGAAAGTGTTGAATCT
CTTCTCAAGCTGGCTGATACGCATTTACTTGCCGTTTCTTACAAGCATGA
GGAAGAAGCAAGATGGAAACGAAAAGGTAAGAACTTGATTGCGAAGATGT
CCGACAGGGATCAGGAGGCTCTAGTGAATGTCATTGAGGGATGCTCGAAG
ATTCCCAATGTGAAGTATGTAATTCTCTGGTGCGATCAAGTCATATCCAC
CAGACAAAAAGACAAGGGAAGGAACACTTTGGGTTGGTACAATTCTGGGC
TCGTCCCATATGCATGTCTTCGAGTTCTCAAGCTTTCTCCTCACATATCT
CACGAAATCCTAGAGTCCCGTGTCTGGCTGAGGGCCGAGCGTTCGTTAGG
TCGACTGGGATGGGGCACTGTGGAAGTAGCTGATGCCGTTTCTGGGCTCT
TGGGAGATCAGGGAGAGTTTGTATCCGTTAGCAGGATCATGAACAGAATT
TCAGGAATGATTCTCAGTGGTTTCTGGCCGAAAGACTTAGGATATTGGAA
AGATGACTACATTCAAATGAAGAAATGGGCTCTCTGCGTACTATCGAAAA
TGCAGTTTTCAGTTCTACCGGCCCCCATTTTCGATGACGTCGAGGAAGTG
GATAACCTAACCATACTCTCGATGATGGATGAATTCGCATTTGTGCCAAG
AGGTTTAGAATACGCTGAGAAACCGGTGCATACTGACGATAGGGCATTCT
TCTTGAAAGCCACTGCCTGGAATATATATACTCAAGATGTCTGGAACGTT
GAGAAGAAAACAGTTTCCCACTACATGGGCTGCATTAGGCTCTCCTATAT
GTTTACATGGTGGGCTAGTGAATGCATGGCATTAATCTTCGGGTTGCTGA
AAGGAGAAGATAGGGCAACTGTTATTCTCGCCGTGAAAGACGGAGATGGC
TACTTGCTGCACAGAAAGGCGGTGGACCACGCGGTCTATTCTCATGCAGA
TCAACACCCCACTGAGGGAGCACTGTGTGCGTTAGAGGGTGTTGCACGAA
ATTATGGATTAGTTTCTCGGACTTGGTCACTGTTGTATAGTTCTTCTGAT
GATAACGATGTAGTCTATACCGATCCCGTTCTAAGACAGGCGCTGGGAGT
TTGGCCAACACGTGCCGATTGCCTTGTTCCGCAGGTTTACATTGGTTTGA
CCACAAAACTTTACCGTTCTGCAGCTGTAAAAGTGAGTGCGAGACAAACA
GTTATAAATCGATTTCTTCAGATCCACAAATCTTGGAACAAGCACATAAG
AGAAGAATACGATAACCACATTTCTGTCACGGATACCGCAGCTGGCACTA
TATGGTTGGAGGGATTCTCAAAAGACAAGGTTTCGTTTGGCTTCTATGAC
TATCTAACACGAGGACTTATACTCGGAGAAAGCGGCTTCTCGAATGAAAC
TGTGATGCTTCCGAGCAAGTGGGAATGTATTCAAGAAATACGAAGAATTG
CCTGTTCTAGCTCGAAAGATGTCCAAGTCCTTGCAGATGAAATATTTGGA
TCAGCCACTGAGATGAATTGCGATGAATTTGTCCGGCTCAAAGACGTTGC
GTGTTTCATAGTTCGAGGGGGATTTGCTACTTGTATGAACGGACTAGGAC
TTTACAGTTTTCTCTGTAGTGTGGCAATGCACAGAGGATACTGGGGAACT
CGCGTCCACGCCCGTGACGGCAAGATGCAGATTATCTTCAGCAACGAGCA
TGGTGATGTGCGTGTTGCACAGAGGGAAACGATCCTTTCGGGATTCCAGA
CCCTCGGACTCGTCAGACCAGAAGATGCGAAAGCGGTACTAGATGTTTCG
GTACCAATAGAGGATGACGCGGAAGAACATGGACAGTACATGTACTGGAA
ATCGATGGGCTCCAACACGACAAGACACCAGATGCAAGCTCTGTTTTCGA
ACTCAGTGTACAAAGTTGACGAAGGTAGACATATTTTGCTGGTTGATATG
TCAATAGTCGAAGGAATGGAAGGTCAAGAAGACTCGGTGGTTGATGTTGA
AAGTATTTCTTTATCGGTGGATAGGTCAATTGGTTATTTGTCGAGGGCCT
TGCGGGGAACGGGACTAAGAGTATCCGCAACTGGTCGCGTCGAATCTGGA
ACTGTTGGAGAATCCGTGTTAGAACCAAACATCTTCTCACAGGAAGGCCG
TGAACGTTTATGGGACGCAATTAGGAGAATCGATGAGATACAGGAAAGGG
CCAGAGCTGGCCAAGCGGAATCGCTGCGGAGGCAAAGGGAAATCCTTAGC
AGTCAGAACAACGGCGACAGCGCTTAG
back to top