Ggra11017.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11017.t1
Unique NameGgra11017.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000224_piloncontigtig00000224_pilon:101752..103378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002505717.1
PFAMsPeptidase_M32
Max annot lvl33090|Viridiplantae
Evalue1.66e-146
EggNOG OGsCOG2317@1|root,2QQRM@2759|Eukaryota,37W65@33090|Viridiplantae
DescriptionCarboxypeptidase Taq (M32) metallopeptidase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11017Ggra11017Gracilaria gracilis GNS1m malegenetig00000224_pilon 101752..103378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11017.t1Ggra11017.t1Gracilaria gracilis GNS1m malepolypeptidetig00000224_pilon 101752..103378 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11017.t1.start1Ggra11017.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000224_pilon 101752..101754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11017.t1.CDS1Ggra11017.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000224_pilon 101752..102487 +
Ggra11017.t1.CDS2Ggra11017.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000224_pilon 102561..103378 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11017.t1.exon1Ggra11017.t1.exon1Gracilaria gracilis GNS1m maleexontig00000224_pilon 101752..102487 +
Ggra11017.t1.exon2Ggra11017.t1.exon2Gracilaria gracilis GNS1m maleexontig00000224_pilon 102561..103378 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11017.t1.intron1Ggra11017.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000224_pilon 102488..102560 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11017.t1.stop1Ggra11017.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000224_pilon 103376..103378 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11017.t1 ID=Ggra11017.t1|Name=Ggra11017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=518bp
MRSRPFAPAMSFAPPPQYAALCAICKDLSHLRAVSGLLGWDEHVMMPAGA
AAARAAQKAVLAAVVHQKATSKQLASTIVAAKEEHHQLGVFENATVRDAD
RDYQRAVRVSEQLERKIASNEVESVRAWVSARQNGHYQQFEPYLRNTLLL
AKEKAVAMKPSSKPYDTMIDVFERGMTSERLAEIFGSIAEPLKVSLDKVL
HMKANCSKKVHPALLGGDLWDVKKQADLCKEISQALGFDLQKGRIDESVH
PFTGGAGYHDVRITTRYSKELPFEGIMGVIHETGHAMYEQGRNDKYDGLP
VNEPLSMGVHESQSLFWERMIAQNINFWHAMLPRIHERLPHTKEVSAHDL
FFAVNQVNRGFIRVDADELTYPFHIILRFDLEKKLVEGRLDVKDLPQAWN
KGMKKHLGVEVEDDKLGCLQDIHWPSGAFGYFPSYTLGAMMAAQLFRHLK
NKVMPDVEERIANGEFRGIREWLRTEIHEVGSLYESLDELLEKVTGEPLN
PQCFLDYLEDKYAKVYS*
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spliced messenger RNA

>Ggra11017.t1 ID=Ggra11017.t1|Name=Ggra11017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000224_pilon:101752..103378+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATCACGGCCGTTCGCACCCGCCATGTCCTTTGCCCCGCCGCCGCA
ATACGCTGCGCTATGCGCGATCTGCAAGGATCTGTCGCACCTGCGCGCCG
TCTCGGGCCTGCTGGGCTGGGACGAGCACGTCATGATGCCAGCGGGCGCT
GCCGCGGCGCGCGCCGCTCAGAAGGCCGTGCTGGCTGCCGTCGTCCACCA
GAAGGCCACCTCCAAGCAGCTCGCTTCCACCATCGTGGCCGCGAAGGAAG
AGCATCACCAACTGGGCGTGTTTGAGAACGCCACCGTGCGCGATGCCGAC
CGCGACTACCAGAGGGCTGTACGCGTGTCGGAGCAGCTCGAGAGGAAGAT
AGCTTCGAACGAGGTCGAGTCCGTGCGCGCGTGGGTCTCTGCCAGGCAGA
ACGGTCACTACCAACAGTTTGAGCCGTATCTGCGTAACACGCTGTTGCTC
GCCAAGGAGAAAGCCGTAGCCATGAAACCGTCGAGCAAGCCGTACGACAC
CATGATCGATGTATTCGAGAGAGGCATGACCTCCGAGAGGCTCGCTGAGA
TCTTCGGTAGTATCGCCGAACCGCTAAAGGTCAGTCTGGACAAGGTGCTA
CACATGAAGGCCAATTGCTCCAAGAAGGTACACCCTGCTCTACTCGGAGG
CGACCTTTGGGATGTGAAAAAGCAAGCCGATCTGTGCAAAGAGatctccc
aagcgctcggcttcgatctccaaaagggcagaatagATGAGTCGGTTCAC
CCTTTCACGGGCGGCGCCGGATACCACGATGTGCGAATCACTACCCGTTA
CAGCAAGGAGCTGCCGTTCGAGGGCATCATGGGCGTCATTCACGAGACCG
GTCACGCCATGTACGAGCAGGGTCGCAACGACAAGTACGACGGACTTCCC
GTCAACGAGCCGTTGTCGATGGGTGTACACGAGTCTCAGAGCCTATTTTG
GGAGCGAATGATAGCGCAGAATATCAACTTTTGGCATGCAATGTTACCAA
GGATCCACGAGAGGCTGCCGCACACCAAAGAGGTTTCAGCACATGATCTT
TTCTTCGCCGTCAATCAAGTGAACAGGGGCTTCATACGTGTTGATGCGGA
TGAGCTAACGTATCCATTTCACATCATTTTGCGTTTTGACTTGGAGAAGA
AGCTCGTTGAGGGTAGATTAGACGTCAAAGACTTGCCACAGGCGTGGAAC
AAGGGCATGAAGAAGCACTTGGGCGTGGAGGTGGAGGACGATAAGCTCGG
CTGTTTGCAGGATATTCATTGGCCGAGTGGTGCGTTCGGGTACTTTCCTT
CTTATACCCTCGGCGCCATGATGGCGGCGCAGCTGTTCCGACACTTGAAG
AACAAGGTGATGCCGGATGTTGAGGAACGGATTGCAAACGGAGAGTTTAG
GGGTATAAGAGAGTGGCTTCGCACGGAGATTCATGAGGTAGGTAGTCTCT
ACGAATCGCTGGACGAATTGCTGGAGAAAGTCACTGGCGAACCACTCAAT
CCACAGTGCTTCCTTGACTATCTTGAAGACAAGTACGCCAAAGTGTACTC
TTAA
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protein sequence of Ggra11017.t1

>Ggra11017.t1 ID=Ggra11017.t1|Name=Ggra11017.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=518bp
MRSRPFAPAMSFAPPPQYAALCAICKDLSHLRAVSGLLGWDEHVMMPAGA
AAARAAQKAVLAAVVHQKATSKQLASTIVAAKEEHHQLGVFENATVRDAD
RDYQRAVRVSEQLERKIASNEVESVRAWVSARQNGHYQQFEPYLRNTLLL
AKEKAVAMKPSSKPYDTMIDVFERGMTSERLAEIFGSIAEPLKVSLDKVL
HMKANCSKKVHPALLGGDLWDVKKQADLCKEISQALGFDLQKGRIDESVH
PFTGGAGYHDVRITTRYSKELPFEGIMGVIHETGHAMYEQGRNDKYDGLP
VNEPLSMGVHESQSLFWERMIAQNINFWHAMLPRIHERLPHTKEVSAHDL
FFAVNQVNRGFIRVDADELTYPFHIILRFDLEKKLVEGRLDVKDLPQAWN
KGMKKHLGVEVEDDKLGCLQDIHWPSGAFGYFPSYTLGAMMAAQLFRHLK
NKVMPDVEERIANGEFRGIREWLRTEIHEVGSLYESLDELLEKVTGEPLN
PQCFLDYLEDKYAKVYS*
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mRNA from alignment at tig00000224_pilon:101752..103378+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11017.t1 ID=Ggra11017.t1|Name=Ggra11017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1627bp|location=Sequence derived from alignment at tig00000224_pilon:101752..103378+ (Gracilaria gracilis GNS1m male)
ATGCGATCACGGCCGTTCGCACCCGCCATGTCCTTTGCCCCGCCGCCGCA
ATACGCTGCGCTATGCGCGATCTGCAAGGATCTGTCGCACCTGCGCGCCG
TCTCGGGCCTGCTGGGCTGGGACGAGCACGTCATGATGCCAGCGGGCGCT
GCCGCGGCGCGCGCCGCTCAGAAGGCCGTGCTGGCTGCCGTCGTCCACCA
GAAGGCCACCTCCAAGCAGCTCGCTTCCACCATCGTGGCCGCGAAGGAAG
AGCATCACCAACTGGGCGTGTTTGAGAACGCCACCGTGCGCGATGCCGAC
CGCGACTACCAGAGGGCTGTACGCGTGTCGGAGCAGCTCGAGAGGAAGAT
AGCTTCGAACGAGGTCGAGTCCGTGCGCGCGTGGGTCTCTGCCAGGCAGA
ACGGTCACTACCAACAGTTTGAGCCGTATCTGCGTAACACGCTGTTGCTC
GCCAAGGAGAAAGCCGTAGCCATGAAACCGTCGAGCAAGCCGTACGACAC
CATGATCGATGTATTCGAGAGAGGCATGACCTCCGAGAGGCTCGCTGAGA
TCTTCGGTAGTATCGCCGAACCGCTAAAGGTCAGTCTGGACAAGGTGCTA
CACATGAAGGCCAATTGCTCCAAGAAGGTACACCCTGCTCTACTCGGAGG
CGACCTTTGGGATGTGAAAAAGCAAGCCGATCTGTGCAAAGAGatctccc
aagcgctcggcttcgatctccaaaagggcagaataggtgagttgccactt
ctTGCCAACCCAAATGCTTTACTTGCATCCCAGCGCTGACAATCTCTTTT
CTTTTGTAGATGAGTCGGTTCACCCTTTCACGGGCGGCGCCGGATACCAC
GATGTGCGAATCACTACCCGTTACAGCAAGGAGCTGCCGTTCGAGGGCAT
CATGGGCGTCATTCACGAGACCGGTCACGCCATGTACGAGCAGGGTCGCA
ACGACAAGTACGACGGACTTCCCGTCAACGAGCCGTTGTCGATGGGTGTA
CACGAGTCTCAGAGCCTATTTTGGGAGCGAATGATAGCGCAGAATATCAA
CTTTTGGCATGCAATGTTACCAAGGATCCACGAGAGGCTGCCGCACACCA
AAGAGGTTTCAGCACATGATCTTTTCTTCGCCGTCAATCAAGTGAACAGG
GGCTTCATACGTGTTGATGCGGATGAGCTAACGTATCCATTTCACATCAT
TTTGCGTTTTGACTTGGAGAAGAAGCTCGTTGAGGGTAGATTAGACGTCA
AAGACTTGCCACAGGCGTGGAACAAGGGCATGAAGAAGCACTTGGGCGTG
GAGGTGGAGGACGATAAGCTCGGCTGTTTGCAGGATATTCATTGGCCGAG
TGGTGCGTTCGGGTACTTTCCTTCTTATACCCTCGGCGCCATGATGGCGG
CGCAGCTGTTCCGACACTTGAAGAACAAGGTGATGCCGGATGTTGAGGAA
CGGATTGCAAACGGAGAGTTTAGGGGTATAAGAGAGTGGCTTCGCACGGA
GATTCATGAGGTAGGTAGTCTCTACGAATCGCTGGACGAATTGCTGGAGA
AAGTCACTGGCGAACCACTCAATCCACAGTGCTTCCTTGACTATCTTGAA
GACAAGTACGCCAAAGTGTACTCTTAA
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Coding sequence (CDS) from alignment at tig00000224_pilon:101752..103378+

>Ggra11017.t1 ID=Ggra11017.t1|Name=Ggra11017.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00000224_pilon:101752..103378+ (Gracilaria gracilis GNS1m male)
ATGCGATCACGGCCGTTCGCACCCGCCATGTCCTTTGCCCCGCCGCCGCA
ATACGCTGCGCTATGCGCGATCTGCAAGGATCTGTCGCACCTGCGCGCCG
TCTCGGGCCTGCTGGGCTGGGACGAGCACGTCATGATGCCAGCGGGCGCT
GCCGCGGCGCGCGCCGCTCAGAAGGCCGTGCTGGCTGCCGTCGTCCACCA
GAAGGCCACCTCCAAGCAGCTCGCTTCCACCATCGTGGCCGCGAAGGAAG
AGCATCACCAACTGGGCGTGTTTGAGAACGCCACCGTGCGCGATGCCGAC
CGCGACTACCAGAGGGCTGTACGCGTGTCGGAGCAGCTCGAGAGGAAGAT
AGCTTCGAACGAGGTCGAGTCCGTGCGCGCGTGGGTCTCTGCCAGGCAGA
ACGGTCACTACCAACAGTTTGAGCCGTATCTGCGTAACACGCTGTTGCTC
GCCAAGGAGAAAGCCGTAGCCATGAAACCGTCGAGCAAGCCGTACGACAC
CATGATCGATGTATTCGAGAGAGGCATGACCTCCGAGAGGCTCGCTGAGA
TCTTCGGTAGTATCGCCGAACCGCTAAAGGTCAGTCTGGACAAGGTGCTA
CACATGAAGGCCAATTGCTCCAAGAAGGTACACCCTGCTCTACTCGGAGG
CGACCTTTGGGATGTGAAAAAGCAAGCCGATCTGTGCAAAGAGatctccc
aagcgctcggcttcgatctccaaaagggcagaatagATGAGTCGGTTCAC
CCTTTCACGGGCGGCGCCGGATACCACGATGTGCGAATCACTACCCGTTA
CAGCAAGGAGCTGCCGTTCGAGGGCATCATGGGCGTCATTCACGAGACCG
GTCACGCCATGTACGAGCAGGGTCGCAACGACAAGTACGACGGACTTCCC
GTCAACGAGCCGTTGTCGATGGGTGTACACGAGTCTCAGAGCCTATTTTG
GGAGCGAATGATAGCGCAGAATATCAACTTTTGGCATGCAATGTTACCAA
GGATCCACGAGAGGCTGCCGCACACCAAAGAGGTTTCAGCACATGATCTT
TTCTTCGCCGTCAATCAAGTGAACAGGGGCTTCATACGTGTTGATGCGGA
TGAGCTAACGTATCCATTTCACATCATTTTGCGTTTTGACTTGGAGAAGA
AGCTCGTTGAGGGTAGATTAGACGTCAAAGACTTGCCACAGGCGTGGAAC
AAGGGCATGAAGAAGCACTTGGGCGTGGAGGTGGAGGACGATAAGCTCGG
CTGTTTGCAGGATATTCATTGGCCGAGTGGTGCGTTCGGGTACTTTCCTT
CTTATACCCTCGGCGCCATGATGGCGGCGCAGCTGTTCCGACACTTGAAG
AACAAGGTGATGCCGGATGTTGAGGAACGGATTGCAAACGGAGAGTTTAG
GGGTATAAGAGAGTGGCTTCGCACGGAGATTCATGAGGTAGGTAGTCTCT
ACGAATCGCTGGACGAATTGCTGGAGAAAGTCACTGGCGAACCACTCAAT
CCACAGTGCTTCCTTGACTATCTTGAAGACAAGTACGCCAAAGTGTACTC
TTAA
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