Ggra10823.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10823.t1
Unique NameGgra10823.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:120314..121480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10823Ggra10823Gracilaria gracilis GNS1m malegenetig00000192_pilon 120314..121480 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10823.t1.start1Ggra10823.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 120314..120316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10823.t1.CDS1Ggra10823.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 120314..121480 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10823.t1.exon1Ggra10823.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 120314..121480 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10823.t1.stop1Ggra10823.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 121478..121480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10823.t1Ggra10823.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 120314..121480 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10823.t1 ID=Ggra10823.t1|Name=Ggra10823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MTSEQAPFARAPDFRPASRALAKVDTFHIILVDWHTVQSPNSATSITARL
RLRDAFIRFLHSLFEFTKLLRQPLMLLATAGHDQQQIVRIVQVLEMTCGT
HAPIASVMQSLRATQQACTPVSPSALAQHTRSLVDQLSQWGASRSATPHT
YIFCNTCISGAISAALSASESPIFRSDRSHIFPCAALAEADAHLSEILAR
LVERTLTLTLPSDAAASLNVRLNIRPRVLMNTTEYPDALVATGRVALQSM
REDMLYGTPLVVWPSSAAACHMEHSTSFGIVVQKLLDWGEALLCVAAGEQ
SQRLFALLPTPSGVRAALLREAAHASNILPLPRTVAPNGAAQHLGREEAQ
ERALRLLPSAAFRAQSLRIGGARRRSANAGSRVKFGAE*
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spliced messenger RNA

>Ggra10823.t1 ID=Ggra10823.t1|Name=Ggra10823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000192_pilon:120314..121480+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCGGAACAAGCGCCGTTCGCACGCGCACCTGATTTCCGACCAGC
ATCGCGTGCCCTCGCCAAAGTCGACACCTTTCACATCATCCTGGTGGACT
GGCATACCGTGCAGTCGCCCAACTCCGCCACATCCATCACCGCTCGTCTC
CGTCTTCGCGATGCATTCATCCGCTTTCTACACAGTTTGTTTGAATTCAC
AAAGCTACTACGTCAACCGCTCATGTTGTTGGCCACCGCTGGTCACGATC
AACAACAGATCGTGCGTATTGTTCAAGTTTTGGAAATGACTTGCGGTACT
CACGCCCCCATTGCCTCGGTGATGCAGTCGTTGCGCGCCACACAGCAGGC
GTGCACACCGGTGTCGCCGTCGGCGCTCGCACAACACACGCGATCCCTCG
TGGATCAATTGTCACAGTGGGGCGCGTCACGAAGCGCCACTCCGCACACG
TATATCTTCTGCAACACGTGCATATCCGGCGCCATCTCGGCGGCGTTGTC
AGCGTCAGAGTCGCCTATATTCCGTTCGGATCGCAGTCATATCTTCCCAT
GCGCGGCGCTTGCAGAGGCCGATGCGCATCTGTCGGAGATTCTGGCGAGA
CTTGTGGAACGTACGCTCACTCTCACATTGCCCAGTGACGCGGCGGCCAG
TCTGAATGTGCGGCTGAATATTCGGCCGCGCGTGTTGATGAACACCACCG
AATATCCCGACGCACTAGTGGCCACCGGACGCGTGGCCTTGCAAAGCATG
CGGGAAGACATGCTATACGGCACGCCGCTCGTGGTGTGGCCCAGCTCGGC
GGCGGCGTGTCACATGGAGCACAGTACGTCATTCGGCATCGTTGTACAGA
AACTGTTAGACTGGGGCGAGGCGCTGTTGTGTGTGGCGGCGGGAGAGCAA
TCGCAGAGGCTGTTCGCGCTACTACCAACGCCCAGCGGGGTGCGCGCGGC
GCTGTTGCGCGAAGCGGCGCACGCGAGCAACATCCTGCCGCTGCCGCGCA
CTGTGGCTCCAAACGGCGCGGCGCAGCACTTGGGGCGCGAGGAGGCGCAA
GAGCGGGCGCTGCGGCTGCTGCCCAGCGCCGCGTTCCGGGCGCAGTCGCT
GCGAATAGGCGGCGCGCGCAGACGGTCTGCGAATGCGGGCAGCCGAGTGA
AGTTTGGCGCGGAATGA
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protein sequence of Ggra10823.t1

>Ggra10823.t1 ID=Ggra10823.t1|Name=Ggra10823.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MTSEQAPFARAPDFRPASRALAKVDTFHIILVDWHTVQSPNSATSITARL
RLRDAFIRFLHSLFEFTKLLRQPLMLLATAGHDQQQIVRIVQVLEMTCGT
HAPIASVMQSLRATQQACTPVSPSALAQHTRSLVDQLSQWGASRSATPHT
YIFCNTCISGAISAALSASESPIFRSDRSHIFPCAALAEADAHLSEILAR
LVERTLTLTLPSDAAASLNVRLNIRPRVLMNTTEYPDALVATGRVALQSM
REDMLYGTPLVVWPSSAAACHMEHSTSFGIVVQKLLDWGEALLCVAAGEQ
SQRLFALLPTPSGVRAALLREAAHASNILPLPRTVAPNGAAQHLGREEAQ
ERALRLLPSAAFRAQSLRIGGARRRSANAGSRVKFGAE*
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mRNA from alignment at tig00000192_pilon:120314..121480+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10823.t1 ID=Ggra10823.t1|Name=Ggra10823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000192_pilon:120314..121480+ (Gracilaria gracilis GNS1m male)
ATGACTTCGGAACAAGCGCCGTTCGCACGCGCACCTGATTTCCGACCAGC
ATCGCGTGCCCTCGCCAAAGTCGACACCTTTCACATCATCCTGGTGGACT
GGCATACCGTGCAGTCGCCCAACTCCGCCACATCCATCACCGCTCGTCTC
CGTCTTCGCGATGCATTCATCCGCTTTCTACACAGTTTGTTTGAATTCAC
AAAGCTACTACGTCAACCGCTCATGTTGTTGGCCACCGCTGGTCACGATC
AACAACAGATCGTGCGTATTGTTCAAGTTTTGGAAATGACTTGCGGTACT
CACGCCCCCATTGCCTCGGTGATGCAGTCGTTGCGCGCCACACAGCAGGC
GTGCACACCGGTGTCGCCGTCGGCGCTCGCACAACACACGCGATCCCTCG
TGGATCAATTGTCACAGTGGGGCGCGTCACGAAGCGCCACTCCGCACACG
TATATCTTCTGCAACACGTGCATATCCGGCGCCATCTCGGCGGCGTTGTC
AGCGTCAGAGTCGCCTATATTCCGTTCGGATCGCAGTCATATCTTCCCAT
GCGCGGCGCTTGCAGAGGCCGATGCGCATCTGTCGGAGATTCTGGCGAGA
CTTGTGGAACGTACGCTCACTCTCACATTGCCCAGTGACGCGGCGGCCAG
TCTGAATGTGCGGCTGAATATTCGGCCGCGCGTGTTGATGAACACCACCG
AATATCCCGACGCACTAGTGGCCACCGGACGCGTGGCCTTGCAAAGCATG
CGGGAAGACATGCTATACGGCACGCCGCTCGTGGTGTGGCCCAGCTCGGC
GGCGGCGTGTCACATGGAGCACAGTACGTCATTCGGCATCGTTGTACAGA
AACTGTTAGACTGGGGCGAGGCGCTGTTGTGTGTGGCGGCGGGAGAGCAA
TCGCAGAGGCTGTTCGCGCTACTACCAACGCCCAGCGGGGTGCGCGCGGC
GCTGTTGCGCGAAGCGGCGCACGCGAGCAACATCCTGCCGCTGCCGCGCA
CTGTGGCTCCAAACGGCGCGGCGCAGCACTTGGGGCGCGAGGAGGCGCAA
GAGCGGGCGCTGCGGCTGCTGCCCAGCGCCGCGTTCCGGGCGCAGTCGCT
GCGAATAGGCGGCGCGCGCAGACGGTCTGCGAATGCGGGCAGCCGAGTGA
AGTTTGGCGCGGAATGA
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Coding sequence (CDS) from alignment at tig00000192_pilon:120314..121480+

>Ggra10823.t1 ID=Ggra10823.t1|Name=Ggra10823.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000192_pilon:120314..121480+ (Gracilaria gracilis GNS1m male)
ATGACTTCGGAACAAGCGCCGTTCGCACGCGCACCTGATTTCCGACCAGC
ATCGCGTGCCCTCGCCAAAGTCGACACCTTTCACATCATCCTGGTGGACT
GGCATACCGTGCAGTCGCCCAACTCCGCCACATCCATCACCGCTCGTCTC
CGTCTTCGCGATGCATTCATCCGCTTTCTACACAGTTTGTTTGAATTCAC
AAAGCTACTACGTCAACCGCTCATGTTGTTGGCCACCGCTGGTCACGATC
AACAACAGATCGTGCGTATTGTTCAAGTTTTGGAAATGACTTGCGGTACT
CACGCCCCCATTGCCTCGGTGATGCAGTCGTTGCGCGCCACACAGCAGGC
GTGCACACCGGTGTCGCCGTCGGCGCTCGCACAACACACGCGATCCCTCG
TGGATCAATTGTCACAGTGGGGCGCGTCACGAAGCGCCACTCCGCACACG
TATATCTTCTGCAACACGTGCATATCCGGCGCCATCTCGGCGGCGTTGTC
AGCGTCAGAGTCGCCTATATTCCGTTCGGATCGCAGTCATATCTTCCCAT
GCGCGGCGCTTGCAGAGGCCGATGCGCATCTGTCGGAGATTCTGGCGAGA
CTTGTGGAACGTACGCTCACTCTCACATTGCCCAGTGACGCGGCGGCCAG
TCTGAATGTGCGGCTGAATATTCGGCCGCGCGTGTTGATGAACACCACCG
AATATCCCGACGCACTAGTGGCCACCGGACGCGTGGCCTTGCAAAGCATG
CGGGAAGACATGCTATACGGCACGCCGCTCGTGGTGTGGCCCAGCTCGGC
GGCGGCGTGTCACATGGAGCACAGTACGTCATTCGGCATCGTTGTACAGA
AACTGTTAGACTGGGGCGAGGCGCTGTTGTGTGTGGCGGCGGGAGAGCAA
TCGCAGAGGCTGTTCGCGCTACTACCAACGCCCAGCGGGGTGCGCGCGGC
GCTGTTGCGCGAAGCGGCGCACGCGAGCAACATCCTGCCGCTGCCGCGCA
CTGTGGCTCCAAACGGCGCGGCGCAGCACTTGGGGCGCGAGGAGGCGCAA
GAGCGGGCGCTGCGGCTGCTGCCCAGCGCCGCGTTCCGGGCGCAGTCGCT
GCGAATAGGCGGCGCGCGCAGACGGTCTGCGAATGCGGGCAGCCGAGTGA
AGTTTGGCGCGGAATGA
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