Ggra10817.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10817.t1
Unique NameGgra10817.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:33226..34237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog101852.XP_008081118.1
PFAMsKdo,Pkinase
Max annot lvl4751|Fungi
Evalue2.51e-22
EggNOG OGs2EK1P@1|root,2SQ23@2759|Eukaryota,39U6I@33154|Opisthokonta,3P0ES@4751|Fungi,3QYUG@4890|Ascomycota
DescriptionProtein kinase domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10817Ggra10817Gracilaria gracilis GNS1m malegenetig00000192_pilon 33226..34237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10817.t1Ggra10817.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 33226..34237 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10817.t1.start1Ggra10817.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 33226..33228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10817.t1.CDS1Ggra10817.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 33226..33229 +
Ggra10817.t1.CDS2Ggra10817.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000192_pilon 33414..34237 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10817.t1.exon1Ggra10817.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 33226..33229 +
Ggra10817.t1.exon2Ggra10817.t1.exon2Gracilaria gracilis GNS1m maleexontig00000192_pilon 33414..34237 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10817.t1.intron1Ggra10817.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000192_pilon 33230..33413 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10817.t1.stop1Ggra10817.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 34235..34237 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10817.t1 ID=Ggra10817.t1|Name=Ggra10817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp
MENALLEKIFKAFEDGNKDGWRERVGSVLDYCMTDVWSYLEKDYTERQAK
GTLMLPVGLLDYDRTEVHKLQLKTIDGTVHALSSKTKTDKGFQPIENRFA
NLRCFCVSDVQVLERITMFVFRVKIHGQVYCVKAGQQWICRAVEKLQKTL
GVANIIHLEGLVVNKDGKILGMVTPFISGETLHRLSSASASQKVMWKEQI
SDAVKSLHKRDVVWGDAKPDNVLISSVNSQAVLIDFDGGRTANWVGEGLS
DTKEGDLQALELILRHIDEKHTSYA*
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spliced messenger RNA

>Ggra10817.t1 ID=Ggra10817.t1|Name=Ggra10817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000192_pilon:33226..34237+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAATGCGCTTCTCGAGAAGATATTTAAAGCTTTTGAGGACGGAAA
TAAAGACGGTTGGAGAGAGCGTGTAGGCTCAGTATTGGATTATTGTATGA
CAGACGTTTGGTCGTACCTTGAGAAAGACTATACAGAGCGGCAAGCAAAA
GGTACACTCATGTTGCCCGTTGGATTACTAGACTACGATCGGACGGAAGT
GCACAAACTGCAACTGAAAACGATTGATGGCACAGTCCATGCATTATCCA
GCAAAACCAAGACTGACAAAGGGTTTCAGCCCATCGAAAACAGATTTGCT
AATCTTCGATGCTTTTGCGTGTCTGACGTTCAGGTCTTGGAAAGAATTAC
CATGTTTGTATTTCGCGTCAAGATTCATGGGCAGGTGTACTGCGTTAAGG
CTGGGCAACAATGGATCTGCCGCGCAGTAGAAAAGCTGCAAAAGACTCTG
GGTGTTGCGAACATCATTCACCTTGAAGGGTTGGTTGTCAATAAGGACGG
TAAGATACTCGGTATGGTAACTCCCTTTATTTCAGGAGAGACTTTGCACC
GCCTCTCGTCGGCTAGTGCGTCGCAGAAGGTGATGTGGAAAGAACAGATC
TCAGATGCCGTGAAATCTCTACACAAGCGCGACGTTGTTTGGGGAGACGC
TAAGCCGGACAACGTTCTTATTAGCAGTGTTAACAGTCAAGCTGTGCTGA
TCGATTTCGATGGCGGGCGCACAGCAAACTGGGTCGGTGAAGGTCTTAGT
GACACCAAAGAAGGTGATTTGCAGGCCCTCGAGCTAATTCTTCGCCACAT
AGATGAGAAACATACATCTTACGCTTGA
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protein sequence of Ggra10817.t1

>Ggra10817.t1 ID=Ggra10817.t1|Name=Ggra10817.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MENALLEKIFKAFEDGNKDGWRERVGSVLDYCMTDVWSYLEKDYTERQAK
GTLMLPVGLLDYDRTEVHKLQLKTIDGTVHALSSKTKTDKGFQPIENRFA
NLRCFCVSDVQVLERITMFVFRVKIHGQVYCVKAGQQWICRAVEKLQKTL
GVANIIHLEGLVVNKDGKILGMVTPFISGETLHRLSSASASQKVMWKEQI
SDAVKSLHKRDVVWGDAKPDNVLISSVNSQAVLIDFDGGRTANWVGEGLS
DTKEGDLQALELILRHIDEKHTSYA*
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mRNA from alignment at tig00000192_pilon:33226..34237+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10817.t1 ID=Ggra10817.t1|Name=Ggra10817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1012bp|location=Sequence derived from alignment at tig00000192_pilon:33226..34237+ (Gracilaria gracilis GNS1m male)
ATGGGTATGGCTCTACCACAAGCAAACTCCTCCAGAGATTCCAGCACACT
TTCCGAAACGTGATCAGGTCTTTGTGCTTAAAGACGTCTTTCACGAACGC
GCTGGATCTCTCCAACGATACATTACTTGGGCCGGTGTTCACTATTTAGT
CGTTGTTGAACCTAACCTACATTGCCAAAACTGTCTAGAAAATGCGCTTC
TCGAGAAGATATTTAAAGCTTTTGAGGACGGAAATAAAGACGGTTGGAGA
GAGCGTGTAGGCTCAGTATTGGATTATTGTATGACAGACGTTTGGTCGTA
CCTTGAGAAAGACTATACAGAGCGGCAAGCAAAAGGTACACTCATGTTGC
CCGTTGGATTACTAGACTACGATCGGACGGAAGTGCACAAACTGCAACTG
AAAACGATTGATGGCACAGTCCATGCATTATCCAGCAAAACCAAGACTGA
CAAAGGGTTTCAGCCCATCGAAAACAGATTTGCTAATCTTCGATGCTTTT
GCGTGTCTGACGTTCAGGTCTTGGAAAGAATTACCATGTTTGTATTTCGC
GTCAAGATTCATGGGCAGGTGTACTGCGTTAAGGCTGGGCAACAATGGAT
CTGCCGCGCAGTAGAAAAGCTGCAAAAGACTCTGGGTGTTGCGAACATCA
TTCACCTTGAAGGGTTGGTTGTCAATAAGGACGGTAAGATACTCGGTATG
GTAACTCCCTTTATTTCAGGAGAGACTTTGCACCGCCTCTCGTCGGCTAG
TGCGTCGCAGAAGGTGATGTGGAAAGAACAGATCTCAGATGCCGTGAAAT
CTCTACACAAGCGCGACGTTGTTTGGGGAGACGCTAAGCCGGACAACGTT
CTTATTAGCAGTGTTAACAGTCAAGCTGTGCTGATCGATTTCGATGGCGG
GCGCACAGCAAACTGGGTCGGTGAAGGTCTTAGTGACACCAAAGAAGGTG
ATTTGCAGGCCCTCGAGCTAATTCTTCGCCACATAGATGAGAAACATACA
TCTTACGCTTGA
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Coding sequence (CDS) from alignment at tig00000192_pilon:33226..34237+

>Ggra10817.t1 ID=Ggra10817.t1|Name=Ggra10817.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000192_pilon:33226..34237+ (Gracilaria gracilis GNS1m male)
ATGGAAAATGCGCTTCTCGAGAAGATATTTAAAGCTTTTGAGGACGGAAA
TAAAGACGGTTGGAGAGAGCGTGTAGGCTCAGTATTGGATTATTGTATGA
CAGACGTTTGGTCGTACCTTGAGAAAGACTATACAGAGCGGCAAGCAAAA
GGTACACTCATGTTGCCCGTTGGATTACTAGACTACGATCGGACGGAAGT
GCACAAACTGCAACTGAAAACGATTGATGGCACAGTCCATGCATTATCCA
GCAAAACCAAGACTGACAAAGGGTTTCAGCCCATCGAAAACAGATTTGCT
AATCTTCGATGCTTTTGCGTGTCTGACGTTCAGGTCTTGGAAAGAATTAC
CATGTTTGTATTTCGCGTCAAGATTCATGGGCAGGTGTACTGCGTTAAGG
CTGGGCAACAATGGATCTGCCGCGCAGTAGAAAAGCTGCAAAAGACTCTG
GGTGTTGCGAACATCATTCACCTTGAAGGGTTGGTTGTCAATAAGGACGG
TAAGATACTCGGTATGGTAACTCCCTTTATTTCAGGAGAGACTTTGCACC
GCCTCTCGTCGGCTAGTGCGTCGCAGAAGGTGATGTGGAAAGAACAGATC
TCAGATGCCGTGAAATCTCTACACAAGCGCGACGTTGTTTGGGGAGACGC
TAAGCCGGACAACGTTCTTATTAGCAGTGTTAACAGTCAAGCTGTGCTGA
TCGATTTCGATGGCGGGCGCACAGCAAACTGGGTCGGTGAAGGTCTTAGT
GACACCAAAGAAGGTGATTTGCAGGCCCTCGAGCTAATTCTTCGCCACAT
AGATGAGAAACATACATCTTACGCTTGA
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