Ggra10816.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10816.t1
Unique NameGgra10816.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:31555..32841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3656.XP_008441434.1
PFAMsDnaJ
Max annot lvl35493|Streptophyta
KEGG koko:K19371
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
Evalue1.38e-07
EggNOG OGsCOG0484@1|root,KOG0722@2759|Eukaryota,37HRV@33090|Viridiplantae,3GC24@35493|Streptophyta,4JHFS@91835|fabids
DescriptiondnaJ homolog subfamily C member 25
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10816Ggra10816Gracilaria gracilis GNS1m malegenetig00000192_pilon 31555..32841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10816.t1Ggra10816.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 31555..32841 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10816.t1.stop1Ggra10816.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 31555..31557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10816.t1.CDS1Ggra10816.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 31555..31592 -
Ggra10816.t1.CDS2Ggra10816.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000192_pilon 31818..31912 -
Ggra10816.t1.CDS3Ggra10816.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000192_pilon 32038..32042 -
Ggra10816.t1.CDS4Ggra10816.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000192_pilon 32245..32318 -
Ggra10816.t1.CDS5Ggra10816.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000192_pilon 32502..32841 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10816.t1.exon1Ggra10816.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 31555..31592 -
Ggra10816.t1.exon2Ggra10816.t1.exon2Gracilaria gracilis GNS1m maleexontig00000192_pilon 31818..31912 -
Ggra10816.t1.exon3Ggra10816.t1.exon3Gracilaria gracilis GNS1m maleexontig00000192_pilon 32038..32042 -
Ggra10816.t1.exon4Ggra10816.t1.exon4Gracilaria gracilis GNS1m maleexontig00000192_pilon 32245..32318 -
Ggra10816.t1.exon5Ggra10816.t1.exon5Gracilaria gracilis GNS1m maleexontig00000192_pilon 32502..32841 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10816.t1.intron1Ggra10816.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000192_pilon 31593..31817 -
Ggra10816.t1.intron2Ggra10816.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000192_pilon 31913..32037 -
Ggra10816.t1.intron3Ggra10816.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000192_pilon 32043..32244 -
Ggra10816.t1.intron4Ggra10816.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000192_pilon 32319..32501 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10816.t1.start1Ggra10816.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 32839..32841 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10816.t1 ID=Ggra10816.t1|Name=Ggra10816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=184bp
MPSAWAYEALDLSPSATQTEVRLAYKRLSLASHPDKTRDPTSRARFDLVL
TAYKFLSDTSLKEEERKRDVSPVITDEIQLWDMDEGEEGLFYSCRCGGLF
CVERNRLHTILGSVTSVSISRISTSDVVMWTAAASLIKSLVCGRSRNALC
IWSSCIYRVLLVMHLSSITSLWLVIHGCRLMYQ*
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spliced messenger RNA

>Ggra10816.t1 ID=Ggra10816.t1|Name=Ggra10816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000192_pilon:31555..32841- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCAGCTTGGGCTTATGAGGCCTTGGATCTATCTCCATCAGCTAC
ACAAACCGAAGTCCGCTTGGCATACAAGCGACTCTCCCTCGCCTCTCATC
CCGATAAGACTCGTGATCCCACCAGTCGTGCTCGCTTTGACCTTGTTCTG
ACGGCTTACAAGTTTCTCTCGGATACATCTTTGAAAGAAGAAGAGCGGAA
GCGGGACGTTTCTCCGGTGATTACGGATGAGATACAGTTGTGGGACATGG
ACGAAGGTGAGGAGGGGTTATTCTATTCGTGTAGATGTGGTGGATTATTT
TGTGTTGAACGCAATCGCCTGCACACTATTCTTGGTTCTGTGACCAGTGT
TTCAATATCCCGCATATCGACGTCCGACGTTGTGATGTGGACGGCAGCAG
CATCTCTCATTAAGTCTCTCGTTTGTGGAAGAAGTCGGAACGCTCTCTGC
ATATGGAGTTCTTGCATCTATCGAGTATTACTAGTTATGCATCTATCGAG
TATTACTAGTTTATGGCTCGTGATCCATGGATGCCGGCTCATGTATCAAT
AA
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protein sequence of Ggra10816.t1

>Ggra10816.t1 ID=Ggra10816.t1|Name=Ggra10816.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MPSAWAYEALDLSPSATQTEVRLAYKRLSLASHPDKTRDPTSRARFDLVL
TAYKFLSDTSLKEEERKRDVSPVITDEIQLWDMDEGEEGLFYSCRCGGLF
CVERNRLHTILGSVTSVSISRISTSDVVMWTAAASLIKSLVCGRSRNALC
IWSSCIYRVLLVMHLSSITSLWLVIHGCRLMYQ*
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mRNA from alignment at tig00000192_pilon:31555..32841-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10816.t1 ID=Ggra10816.t1|Name=Ggra10816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000192_pilon:31555..32841- (Gracilaria gracilis GNS1m male)
ATGCCTTCAGCTTGGGCTTATGAGGCCTTGGATCTATCTCCATCAGCTAC
ACAAACCGAAGTCCGCTTGGCATACAAGCGACTCTCCCTCGCCTCTCATC
CCGATAAGACTCGTGATCCCACCAGTCGTGCTCGCTTTGACCTTGTTCTG
ACGGCTTACAAGTTTCTCTCGGATACATCTTTGAAAGAAGAAGAGCGGAA
GCGGGACGTTTCTCCGGTGATTACGGATGAGATACAGTTGTGGGACATGG
ACGAAGGTGAGGAGGGGTTATTCTATTCGTGTAGATGTGGTGGATTATTT
TGTGTTGAACGCAATCGCCTGCACACTATTCTTGGTTCTGGTGAGGATGA
CGTTGTTGTTTCTTGTGACGGATGTTCCCTCGCTATTAAGGTGTCTCCAC
GTGGTTGACAGTTTTGGTCCACTACGTGTTTTTTCATCTCGATTGTTTGT
GAGCGATTAATCAATCTCTCGGTCCGATCTTCACTTACTTCGTTCTGCGT
GGAGTGATCCGGGTGATTGGTAGTGACCAGTGTTTCAATATCCCGCATAT
CGACGTCCGACGTTGTGATGTGGACGGCAGCAGCATCTCTCATTAAGGTA
AGATTTCCGCTACCAGCACGAGTTCTCGAACATATGAAAACAAGGAAGAT
CTTGCAACTTTCGCTGTTACTGAAGTATCCAATGGGATGAAAGTCTACTC
GCTTTACCGTTCTGAGTTTCTAAGTCCAACCGAGAACACTTTTCGTCGCA
CGGCCTTTGAAGACTTGTTCTAACTTCAATATTCTTCTGTCCCTCCAAGT
CTCTGTGCGCATTACAAAATTCGAGCGCCAGATAACTCGCCATGTGAAGG
GAAGTGGAGTTGTTTCACCTGACTAACTACCGCGATCCAACCGAACCCTG
AGGTTTTCCCCTTGAGGTGATGAGAGCAGCGTTTGTGGAAGAAGTCGGAA
CGCTCTCTGCATATGGAGTTCTTGCATCTATCGAGTATTACTAGTTATGC
ATCTATCGAGTATTACTAGTTTATGTACGTTTGGTGCACTCTTCTTGTTT
GCCTGCAGTACGTACAGATTTGACGATGATGATCGAAGCATTTCATCTTA
ATGCCTTGTGTATGTGATGATCTTTTGCTTTACTGCTACCTTATATTGTT
GTTTACCCGTCTGAGTCAAGATGTACACACCAAGCAATGGCGTTTTGTGT
ATCAATGTTGTCTAACTTGGTATCTTCTTTTGCTTCAACCGTATGCTAGG
GCTCGTGATCCATGGATGCCGGCTCATGTATCAATAA
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Coding sequence (CDS) from alignment at tig00000192_pilon:31555..32841-

>Ggra10816.t1 ID=Ggra10816.t1|Name=Ggra10816.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00000192_pilon:31555..32841- (Gracilaria gracilis GNS1m male)
ATGCCTTCAGCTTGGGCTTATGAGGCCTTGGATCTATCTCCATCAGCTAC
ACAAACCGAAGTCCGCTTGGCATACAAGCGACTCTCCCTCGCCTCTCATC
CCGATAAGACTCGTGATCCCACCAGTCGTGCTCGCTTTGACCTTGTTCTG
ACGGCTTACAAGTTTCTCTCGGATACATCTTTGAAAGAAGAAGAGCGGAA
GCGGGACGTTTCTCCGGTGATTACGGATGAGATACAGTTGTGGGACATGG
ACGAAGGTGAGGAGGGGTTATTCTATTCGTGTAGATGTGGTGGATTATTT
TGTGTTGAACGCAATCGCCTGCACACTATTCTTGGTTCTGTGACCAGTGT
TTCAATATCCCGCATATCGACGTCCGACGTTGTGATGTGGACGGCAGCAG
CATCTCTCATTAAGTCTCTCGTTTGTGGAAGAAGTCGGAACGCTCTCTGC
ATATGGAGTTCTTGCATCTATCGAGTATTACTAGTTATGCATCTATCGAG
TATTACTAGTTTATGGCTCGTGATCCATGGATGCCGGCTCATGTATCAAT
AA
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