Ggra10815.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10815.t2
Unique NameGgra10815.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:30682..31038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1151127.KB906326_gene593
Max annot lvl1236|Gammaproteobacteria
Evalue1.86e-47
EggNOG OGsCOG0543@1|root,COG0543@2|Bacteria,1PGWQ@1224|Proteobacteria,1SJRE@1236|Gammaproteobacteria,1YT53@136843|Pseudomonas fluorescens group
Description2 iron, 2 sulfur cluster binding
COG categoryCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10815Ggra10815Gracilaria gracilis GNS1m malegenetig00000192_pilon 29536..31038 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10815.t2.start1Ggra10815.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 30682..30684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10815.t2.CDS1Ggra10815.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 30682..31038 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10815.t2.exon1Ggra10815.t2.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 30682..31038 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10815.t2.stop1Ggra10815.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 31036..31038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10815.t2Ggra10815.t2Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 30682..31038 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10815.t2 ID=Ggra10815.t2|Name=Ggra10815.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=119bp
METLFRKILYVATGSGIGPILPHLLQKRVPSRLFWSTRTPESTYGRDLVE
EIITASPDAVIHDTTLLGKPDMVQKTYQLCMESGAEAIIVISNQKLTRKV
VYGMEARGIPAFGAIWDS*
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spliced messenger RNA

>Ggra10815.t2 ID=Ggra10815.t2|Name=Ggra10815.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000192_pilon:30682..31038+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACCTTGTTCCGCAAAATACTTTATGTTGCGACTGGTTCAGGGAT
TGGTCCCATACTACCACACCTGCTGCAGAAGAGAGTTCCTTCTCGGCTAT
TCTGGTCCACTCGAACCCCAGAAAGTACGTATGGGCGGGACCTTGTTGAA
GAAATCATTACTGCGAGCCCCGACGCAGTTATTCACGACACCACGCTGCT
TGGCAAACCAGATATGGTTCAGAAGACATATCAACTTTGTATGGAGAGCG
GTGCGGAGGCGATTATCGTAATCTCGAACCAAAAATTAACTAGAAAGGTC
GTTTACGGCATGGAAGCCCGAGGTATACCTGCGTTTGGTGCCATTTGGGA
CTCATAA
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protein sequence of Ggra10815.t2

>Ggra10815.t2 ID=Ggra10815.t2|Name=Ggra10815.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=119bp
METLFRKILYVATGSGIGPILPHLLQKRVPSRLFWSTRTPESTYGRDLVE
EIITASPDAVIHDTTLLGKPDMVQKTYQLCMESGAEAIIVISNQKLTRKV
VYGMEARGIPAFGAIWDS*
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mRNA from alignment at tig00000192_pilon:30682..31038+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10815.t2 ID=Ggra10815.t2|Name=Ggra10815.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000192_pilon:30682..31038+ (Gracilaria gracilis GNS1m male)
ATGGAAACCTTGTTCCGCAAAATACTTTATGTTGCGACTGGTTCAGGGAT
TGGTCCCATACTACCACACCTGCTGCAGAAGAGAGTTCCTTCTCGGCTAT
TCTGGTCCACTCGAACCCCAGAAAGTACGTATGGGCGGGACCTTGTTGAA
GAAATCATTACTGCGAGCCCCGACGCAGTTATTCACGACACCACGCTGCT
TGGCAAACCAGATATGGTTCAGAAGACATATCAACTTTGTATGGAGAGCG
GTGCGGAGGCGATTATCGTAATCTCGAACCAAAAATTAACTAGAAAGGTC
GTTTACGGCATGGAAGCCCGAGGTATACCTGCGTTTGGTGCCATTTGGGA
CTCATAA
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Coding sequence (CDS) from alignment at tig00000192_pilon:30682..31038+

>Ggra10815.t2 ID=Ggra10815.t2|Name=Ggra10815.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=357bp|location=Sequence derived from alignment at tig00000192_pilon:30682..31038+ (Gracilaria gracilis GNS1m male)
ATGGAAACCTTGTTCCGCAAAATACTTTATGTTGCGACTGGTTCAGGGAT
TGGTCCCATACTACCACACCTGCTGCAGAAGAGAGTTCCTTCTCGGCTAT
TCTGGTCCACTCGAACCCCAGAAAGTACGTATGGGCGGGACCTTGTTGAA
GAAATCATTACTGCGAGCCCCGACGCAGTTATTCACGACACCACGCTGCT
TGGCAAACCAGATATGGTTCAGAAGACATATCAACTTTGTATGGAGAGCG
GTGCGGAGGCGATTATCGTAATCTCGAACCAAAAATTAACTAGAAAGGTC
GTTTACGGCATGGAAGCCCGAGGTATACCTGCGTTTGGTGCCATTTGGGA
CTCATAA
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