Ggra10813.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10813.t1
Unique NameGgra10813.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:25664..26473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog245174.XP_009266318.1
PFAMsECH_1
Max annot lvl4751|Fungi
KEGG rclassRC00770,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103
KEGG koko:K07511
KEGG ReactionR02685,R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06942
KEGG Pathwayko00062,ko00071,ko00280,ko00310,ko00380,ko00410,ko00627,ko00640,ko00650,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00062,map00071,map00280,map00310,map00380,map00410,map00627,map00640,map00650,map00930,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00013,M00032,M00085,M00087
Evalue1.72e-56
EggNOG OGsCOG1024@1|root,KOG1680@2759|Eukaryota,38F58@33154|Opisthokonta,3NTZK@4751|Fungi,3UYIS@5204|Basidiomycota
EC4.2.1.17
DescriptionBelongs to the enoyl-CoA hydratase isomerase family
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10813Ggra10813Gracilaria gracilis GNS1m malegenetig00000192_pilon 25664..26473 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10813.t1.stop1Ggra10813.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 25664..25666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10813.t1.CDS1Ggra10813.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 25664..26473 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10813.t1.exon1Ggra10813.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 25664..26473 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10813.t1.start1Ggra10813.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 26471..26473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10813.t1Ggra10813.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 25664..26473 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10813.t1 ID=Ggra10813.t1|Name=Ggra10813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=270bp
MAPTTTNETLSAKAEPSLLLESDTHSGVRLLTLHRPKARNAINRHLSNQL
CTALQHAETDAAVRVVVISATSPVFCAGVDINELRDLAPDSAYEQQWLTD
WPHMIHQMRKPVVVAVDGPALGGGFELVLLADVVFASRKAQFGLPEILLG
TIPGAGGTVRLVESIGKGRALSMMWTGERMEVDEAYARGIVARICDNVVE
ESLEFAETVAAQSANCVKMTKELVKGRENGWQNRALMERMMYYLSFGMSD
FQEGCNRFVRRREKRVTES*
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spliced messenger RNA

>Ggra10813.t1 ID=Ggra10813.t1|Name=Ggra10813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000192_pilon:25664..26473- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCCACGACCACAAACGAAACACTCTCCGCGAAGGCAGAACCAAG
TTTGCTCCTGGAGAGCGACACTCATTCTGGAGTTCGTTTACTCACTCTAC
ATCGCCCGAAGGCGCGCAATGCCATTAACCGTCACCTCTCGAACCAACTA
TGTACCGCCTTACAACACGCTGAGACCGATGCTGCCGTTCGTGTTGTGGT
TATTTCTGCAACATCCCCCGTCTTCTGTGCAGGAGTTGATATAAACGAGT
TGCGGGATTTGGCACCCGACTCTGCATATGAACAACAGTGGCTAACTGAT
TGGCCGCATATGATTCACCAAATGAGGAAACCAGTTGTGGTAGCTGTGGA
CGGACCCGCACTAGGCGGCGGGTTCGAACTGGTTTTGCTTGCCGACGTGG
TGTTTGCCTCAAGGAAAGCGCAGTTTGGGCTGCCTGAGATTCTTCTAGGG
ACAATCCCTGGTGCAGGCGGCACGGTAAGGCTTGTTGAGAGTATTGGGAA
GGGAAGAGCTTTGAGTATGATGTGGACTGGTGAACGCATGGAGGTTGATG
AGGCTTACGCCAGGGGGATCGTGGCCAGAATTTGTGACAACGTTGTTGAG
GAGAGCTTGGAGTTCGCCGAGACTGTGGCCGCTCAAAGTGCAAATTGCGT
AAAGATGACCAAGGAGTTGGTCAAGGGAAGGGAGAATGGGTGGCAGAATC
GGGCACTGATGGAACGGATGATGTACTACTTGAGCTTTGGGATGTCGGAC
TTTCAAGAGGGCTGTAATCGATTCGTCCGACGACGGGAGAAACGAGTAAC
TGAGTCATAG
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protein sequence of Ggra10813.t1

>Ggra10813.t1 ID=Ggra10813.t1|Name=Ggra10813.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MAPTTTNETLSAKAEPSLLLESDTHSGVRLLTLHRPKARNAINRHLSNQL
CTALQHAETDAAVRVVVISATSPVFCAGVDINELRDLAPDSAYEQQWLTD
WPHMIHQMRKPVVVAVDGPALGGGFELVLLADVVFASRKAQFGLPEILLG
TIPGAGGTVRLVESIGKGRALSMMWTGERMEVDEAYARGIVARICDNVVE
ESLEFAETVAAQSANCVKMTKELVKGRENGWQNRALMERMMYYLSFGMSD
FQEGCNRFVRRREKRVTES*
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mRNA from alignment at tig00000192_pilon:25664..26473-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10813.t1 ID=Ggra10813.t1|Name=Ggra10813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000192_pilon:25664..26473- (Gracilaria gracilis GNS1m male)
ATGGCCCCCACGACCACAAACGAAACACTCTCCGCGAAGGCAGAACCAAG
TTTGCTCCTGGAGAGCGACACTCATTCTGGAGTTCGTTTACTCACTCTAC
ATCGCCCGAAGGCGCGCAATGCCATTAACCGTCACCTCTCGAACCAACTA
TGTACCGCCTTACAACACGCTGAGACCGATGCTGCCGTTCGTGTTGTGGT
TATTTCTGCAACATCCCCCGTCTTCTGTGCAGGAGTTGATATAAACGAGT
TGCGGGATTTGGCACCCGACTCTGCATATGAACAACAGTGGCTAACTGAT
TGGCCGCATATGATTCACCAAATGAGGAAACCAGTTGTGGTAGCTGTGGA
CGGACCCGCACTAGGCGGCGGGTTCGAACTGGTTTTGCTTGCCGACGTGG
TGTTTGCCTCAAGGAAAGCGCAGTTTGGGCTGCCTGAGATTCTTCTAGGG
ACAATCCCTGGTGCAGGCGGCACGGTAAGGCTTGTTGAGAGTATTGGGAA
GGGAAGAGCTTTGAGTATGATGTGGACTGGTGAACGCATGGAGGTTGATG
AGGCTTACGCCAGGGGGATCGTGGCCAGAATTTGTGACAACGTTGTTGAG
GAGAGCTTGGAGTTCGCCGAGACTGTGGCCGCTCAAAGTGCAAATTGCGT
AAAGATGACCAAGGAGTTGGTCAAGGGAAGGGAGAATGGGTGGCAGAATC
GGGCACTGATGGAACGGATGATGTACTACTTGAGCTTTGGGATGTCGGAC
TTTCAAGAGGGCTGTAATCGATTCGTCCGACGACGGGAGAAACGAGTAAC
TGAGTCATAG
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Coding sequence (CDS) from alignment at tig00000192_pilon:25664..26473-

>Ggra10813.t1 ID=Ggra10813.t1|Name=Ggra10813.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000192_pilon:25664..26473- (Gracilaria gracilis GNS1m male)
ATGGCCCCCACGACCACAAACGAAACACTCTCCGCGAAGGCAGAACCAAG
TTTGCTCCTGGAGAGCGACACTCATTCTGGAGTTCGTTTACTCACTCTAC
ATCGCCCGAAGGCGCGCAATGCCATTAACCGTCACCTCTCGAACCAACTA
TGTACCGCCTTACAACACGCTGAGACCGATGCTGCCGTTCGTGTTGTGGT
TATTTCTGCAACATCCCCCGTCTTCTGTGCAGGAGTTGATATAAACGAGT
TGCGGGATTTGGCACCCGACTCTGCATATGAACAACAGTGGCTAACTGAT
TGGCCGCATATGATTCACCAAATGAGGAAACCAGTTGTGGTAGCTGTGGA
CGGACCCGCACTAGGCGGCGGGTTCGAACTGGTTTTGCTTGCCGACGTGG
TGTTTGCCTCAAGGAAAGCGCAGTTTGGGCTGCCTGAGATTCTTCTAGGG
ACAATCCCTGGTGCAGGCGGCACGGTAAGGCTTGTTGAGAGTATTGGGAA
GGGAAGAGCTTTGAGTATGATGTGGACTGGTGAACGCATGGAGGTTGATG
AGGCTTACGCCAGGGGGATCGTGGCCAGAATTTGTGACAACGTTGTTGAG
GAGAGCTTGGAGTTCGCCGAGACTGTGGCCGCTCAAAGTGCAAATTGCGT
AAAGATGACCAAGGAGTTGGTCAAGGGAAGGGAGAATGGGTGGCAGAATC
GGGCACTGATGGAACGGATGATGTACTACTTGAGCTTTGGGATGTCGGAC
TTTCAAGAGGGCTGTAATCGATTCGTCCGACGACGGGAGAAACGAGTAAC
TGAGTCATAG
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