Ggra10812.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10812.t1
Unique NameGgra10812.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length583
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:22656..24404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog911045.PSE_p0317
PFAMsAMP-binding,AMP-binding_C,Acyl_transf_1,Condensation,KAsynt_C_assoc,Ketoacyl-synt_C,PP-binding,Thioesterase,ketoacyl-synt
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00162,RC03046
KEGG koko:K02364
KEGG ReactionR07644
KEGG Pathwayko01053,ko01110,ko01130,map01053,map01110,map01130
Evalue5.78e-174
EggNOG OGsCOG1020@1|root,COG1020@2|Bacteria,1QK4F@1224|Proteobacteria,2TRUN@28211|Alphaproteobacteria
EC6.3.2.14
Descriptionnon-ribosomal peptide synthetase
COG categoryQ
BRITEko00000,ko00001,ko01000,ko01008
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10812Ggra10812Gracilaria gracilis GNS1m malegenetig00000192_pilon 22656..24404 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10812.t1.stop1Ggra10812.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 22656..22658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10812.t1.CDS1Ggra10812.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 22656..24404 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10812.t1.exon1Ggra10812.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 22656..24404 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10812.t1.start1Ggra10812.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 24402..24404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10812.t1Ggra10812.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 22656..24404 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10812.t1 ID=Ggra10812.t1|Name=Ggra10812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=583bp
MRIPLSPTDPALISLSDKDRKRFCEVSAGIRQTPAHPTITAAIQNAMNHY
PQSIAAHTVQPDGFLHATEQISYDTLRRRANLVSAALQGHGVNPGDSVCL
FLSRGIDMLVGIVAILQLGASYVPQDARIAPHAQLVRVAAATRALVVLTT
RQHASRLPQFPHAVVLPVRVAEEEGSFLPPFTQPKRPVRPSDTCYIIFTS
GTTGAPKGVQVTHGNVANVLLTDPMSLGMRNGVLVSQILSIAFDMCAWEV
LGCLSHGATLVIRGRSISHAVSHAQVVVSTPTVLGTLDSSRMHHVQTVAV
AGEPCPRALADEWSEFCTFYNSCGPTEVTIINTAKKHQANETRLTIGKPT
PNNTVYVLERDTRKPCPIGDVGEMWAGGDCVSKGYLGNAELTRERFVMDP
FLGGDARMYRTGDLGRWTDDGELEHFGRVDEQVKVKGFRVELDGVSSVIE
HTVGVKKAVVLKLNESLVAFVTPANVSTDKVKRMVSAHLPYYCVPAQVLS
MEGLPRTGNGKVDKRALLSGLSGKITGSALEKSETNDTLHVVKDVTARKL
LSFSPVIQSALYGVVVMTNLIRYFLAVVRKIA*
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spliced messenger RNA

>Ggra10812.t1 ID=Ggra10812.t1|Name=Ggra10812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000192_pilon:22656..24404- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAATACCTCTTTCCCCTACCGACCCAGCTCTTATATCTCTTTCCGA
CAAGGACCGCAAACGTTTTTGTGAAGTTTCAGCTGGAATACGTCAAACCC
CTGCTCACCCAACGATCACAGCCGCTATCCAAAACGCAATGAACCATTAC
CCGCAATCTATTGCTGCCCATACGGTTCAGCCTGATGGATTTCTACATGC
CACTGAACAAATATCATATGATACCCTCCGAAGGCGTGCCAATCTTGTTT
CAGCTGCCCTTCAAGGACACGGGGTCAATCCCGGGGACTCAGTATGTCTC
TTCCTTTCCCGCGGGATTGATATGCTCGTCGGAATCGTCGCAATTTTGCA
ACTTGGTGCCAGTTACGTACCACAAGACGCTCGTATCGCTCCACACGCAC
AATTGGTCCGTGTCGCAGCTGCTACTCGAGCTCTAGTCGTCCTTACGACT
CGACAGCATGCTTCTAGGCTCCCGCAATTTCCGCACGCAGTTGTACTCCC
TGTAAGAGTTGCAGAAGAGGAGGGAAGCTTTCTGCCACCTTTCACACAGC
CTAAACGTCCCGTGCGCCCTTCGGACACATGTTACATCATCTTCACCTCT
GGAACTACGGGTGCACCTAAAGGTGTTCAAGTCACGCATGGAAATGTGGC
AAACGTCTTGCTCACAGATCCCATGAGCTTGGGGATGCGAAATGGCGTTC
TTGTATCTCAGATTCTCAGCATTGCCTTTGACATGTGTGCTTGGGAGGTG
TTAGGGTGTCTTTCACATGGGGCTACGCTCGTTATTCGTGGTCGAAGTAT
TTCTCATGCTGTTTCCCACGCTCAGGTTGTGGTATCAACGCCAACTGTTC
TAGGCACACTAGATTCGTCGAGAATGCATCATGTCCAAACTGTGGCAGTT
GCCGGCGAGCCTTGCCCTCGAGCTCTTGCTGACGAGTGGAGTGAGTTCTG
TACCTTTTACAACTCCTGTGGACCTACTGAAGTTACTATTATTAACACAG
CAAAGAAGCACCAAGCTAATGAGACGCGTCTTACCATCGGGAAACCAACT
CCCAACAACACAGTGTATGTGTTGGAGCGAGATACCCGCAAACCTTGCCC
TATCGGTGATGTCGGTGAAATGTGGGCTGGAGGGGACTGCGTCTCAAAAG
GATATTTGGGCAATGCTGAGCTTACCAGGGAGCGTTTTGTGATGGACCCG
TTTCTTGGTGGTGACGCACGAATGTATCGCACTGGCGACTTAGGCCGGTG
GACCGATGATGGCGAGCTTGAACATTTTGGAAGGGTGGATGAACAGGTGA
AGGTGAAGGGGTTCCGTGTTGAACTGGATGGCGTATCTTCGGTGATTGAA
CACACTGTTGGAGTGAAGAAGGCTGTTGTGTTGAAATTGAATGAGTCTCT
CGTGGCCTTTGTCACCCCTGCCAACGTCAGTACAGACAAGGTGAAACGCA
TGGTTAGCGCACATCTACCGTATTATTGCGTCCCCGCACAGGTATTGTCC
ATGGAAGGTCTCCCTAGAACTGGAAATGGGAAGGTTGATAAACGTGCTTT
GCTCAGCGGGTTGTCAGGTAAGATCACTGGAAGTGCGCTCGAGAAGAGTG
AGACTAATGACACCTTGCACGTGGTCAAAGACGTCACTGCGAGAAAACTA
CTATCTTTCTCACCAGTTATCCAGAGTGCTTTGTATGGAGTTGTGGTCAT
GACGAACCTCATTCGGTATTTCCTTGCTGTGGTACGGAAAATAGCATGA
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protein sequence of Ggra10812.t1

>Ggra10812.t1 ID=Ggra10812.t1|Name=Ggra10812.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=583bp
MRIPLSPTDPALISLSDKDRKRFCEVSAGIRQTPAHPTITAAIQNAMNHY
PQSIAAHTVQPDGFLHATEQISYDTLRRRANLVSAALQGHGVNPGDSVCL
FLSRGIDMLVGIVAILQLGASYVPQDARIAPHAQLVRVAAATRALVVLTT
RQHASRLPQFPHAVVLPVRVAEEEGSFLPPFTQPKRPVRPSDTCYIIFTS
GTTGAPKGVQVTHGNVANVLLTDPMSLGMRNGVLVSQILSIAFDMCAWEV
LGCLSHGATLVIRGRSISHAVSHAQVVVSTPTVLGTLDSSRMHHVQTVAV
AGEPCPRALADEWSEFCTFYNSCGPTEVTIINTAKKHQANETRLTIGKPT
PNNTVYVLERDTRKPCPIGDVGEMWAGGDCVSKGYLGNAELTRERFVMDP
FLGGDARMYRTGDLGRWTDDGELEHFGRVDEQVKVKGFRVELDGVSSVIE
HTVGVKKAVVLKLNESLVAFVTPANVSTDKVKRMVSAHLPYYCVPAQVLS
MEGLPRTGNGKVDKRALLSGLSGKITGSALEKSETNDTLHVVKDVTARKL
LSFSPVIQSALYGVVVMTNLIRYFLAVVRKIA*
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mRNA from alignment at tig00000192_pilon:22656..24404-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10812.t1 ID=Ggra10812.t1|Name=Ggra10812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000192_pilon:22656..24404- (Gracilaria gracilis GNS1m male)
ATGAGAATACCTCTTTCCCCTACCGACCCAGCTCTTATATCTCTTTCCGA
CAAGGACCGCAAACGTTTTTGTGAAGTTTCAGCTGGAATACGTCAAACCC
CTGCTCACCCAACGATCACAGCCGCTATCCAAAACGCAATGAACCATTAC
CCGCAATCTATTGCTGCCCATACGGTTCAGCCTGATGGATTTCTACATGC
CACTGAACAAATATCATATGATACCCTCCGAAGGCGTGCCAATCTTGTTT
CAGCTGCCCTTCAAGGACACGGGGTCAATCCCGGGGACTCAGTATGTCTC
TTCCTTTCCCGCGGGATTGATATGCTCGTCGGAATCGTCGCAATTTTGCA
ACTTGGTGCCAGTTACGTACCACAAGACGCTCGTATCGCTCCACACGCAC
AATTGGTCCGTGTCGCAGCTGCTACTCGAGCTCTAGTCGTCCTTACGACT
CGACAGCATGCTTCTAGGCTCCCGCAATTTCCGCACGCAGTTGTACTCCC
TGTAAGAGTTGCAGAAGAGGAGGGAAGCTTTCTGCCACCTTTCACACAGC
CTAAACGTCCCGTGCGCCCTTCGGACACATGTTACATCATCTTCACCTCT
GGAACTACGGGTGCACCTAAAGGTGTTCAAGTCACGCATGGAAATGTGGC
AAACGTCTTGCTCACAGATCCCATGAGCTTGGGGATGCGAAATGGCGTTC
TTGTATCTCAGATTCTCAGCATTGCCTTTGACATGTGTGCTTGGGAGGTG
TTAGGGTGTCTTTCACATGGGGCTACGCTCGTTATTCGTGGTCGAAGTAT
TTCTCATGCTGTTTCCCACGCTCAGGTTGTGGTATCAACGCCAACTGTTC
TAGGCACACTAGATTCGTCGAGAATGCATCATGTCCAAACTGTGGCAGTT
GCCGGCGAGCCTTGCCCTCGAGCTCTTGCTGACGAGTGGAGTGAGTTCTG
TACCTTTTACAACTCCTGTGGACCTACTGAAGTTACTATTATTAACACAG
CAAAGAAGCACCAAGCTAATGAGACGCGTCTTACCATCGGGAAACCAACT
CCCAACAACACAGTGTATGTGTTGGAGCGAGATACCCGCAAACCTTGCCC
TATCGGTGATGTCGGTGAAATGTGGGCTGGAGGGGACTGCGTCTCAAAAG
GATATTTGGGCAATGCTGAGCTTACCAGGGAGCGTTTTGTGATGGACCCG
TTTCTTGGTGGTGACGCACGAATGTATCGCACTGGCGACTTAGGCCGGTG
GACCGATGATGGCGAGCTTGAACATTTTGGAAGGGTGGATGAACAGGTGA
AGGTGAAGGGGTTCCGTGTTGAACTGGATGGCGTATCTTCGGTGATTGAA
CACACTGTTGGAGTGAAGAAGGCTGTTGTGTTGAAATTGAATGAGTCTCT
CGTGGCCTTTGTCACCCCTGCCAACGTCAGTACAGACAAGGTGAAACGCA
TGGTTAGCGCACATCTACCGTATTATTGCGTCCCCGCACAGGTATTGTCC
ATGGAAGGTCTCCCTAGAACTGGAAATGGGAAGGTTGATAAACGTGCTTT
GCTCAGCGGGTTGTCAGGTAAGATCACTGGAAGTGCGCTCGAGAAGAGTG
AGACTAATGACACCTTGCACGTGGTCAAAGACGTCACTGCGAGAAAACTA
CTATCTTTCTCACCAGTTATCCAGAGTGCTTTGTATGGAGTTGTGGTCAT
GACGAACCTCATTCGGTATTTCCTTGCTGTGGTACGGAAAATAGCATGA
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Coding sequence (CDS) from alignment at tig00000192_pilon:22656..24404-

>Ggra10812.t1 ID=Ggra10812.t1|Name=Ggra10812.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00000192_pilon:22656..24404- (Gracilaria gracilis GNS1m male)
ATGAGAATACCTCTTTCCCCTACCGACCCAGCTCTTATATCTCTTTCCGA
CAAGGACCGCAAACGTTTTTGTGAAGTTTCAGCTGGAATACGTCAAACCC
CTGCTCACCCAACGATCACAGCCGCTATCCAAAACGCAATGAACCATTAC
CCGCAATCTATTGCTGCCCATACGGTTCAGCCTGATGGATTTCTACATGC
CACTGAACAAATATCATATGATACCCTCCGAAGGCGTGCCAATCTTGTTT
CAGCTGCCCTTCAAGGACACGGGGTCAATCCCGGGGACTCAGTATGTCTC
TTCCTTTCCCGCGGGATTGATATGCTCGTCGGAATCGTCGCAATTTTGCA
ACTTGGTGCCAGTTACGTACCACAAGACGCTCGTATCGCTCCACACGCAC
AATTGGTCCGTGTCGCAGCTGCTACTCGAGCTCTAGTCGTCCTTACGACT
CGACAGCATGCTTCTAGGCTCCCGCAATTTCCGCACGCAGTTGTACTCCC
TGTAAGAGTTGCAGAAGAGGAGGGAAGCTTTCTGCCACCTTTCACACAGC
CTAAACGTCCCGTGCGCCCTTCGGACACATGTTACATCATCTTCACCTCT
GGAACTACGGGTGCACCTAAAGGTGTTCAAGTCACGCATGGAAATGTGGC
AAACGTCTTGCTCACAGATCCCATGAGCTTGGGGATGCGAAATGGCGTTC
TTGTATCTCAGATTCTCAGCATTGCCTTTGACATGTGTGCTTGGGAGGTG
TTAGGGTGTCTTTCACATGGGGCTACGCTCGTTATTCGTGGTCGAAGTAT
TTCTCATGCTGTTTCCCACGCTCAGGTTGTGGTATCAACGCCAACTGTTC
TAGGCACACTAGATTCGTCGAGAATGCATCATGTCCAAACTGTGGCAGTT
GCCGGCGAGCCTTGCCCTCGAGCTCTTGCTGACGAGTGGAGTGAGTTCTG
TACCTTTTACAACTCCTGTGGACCTACTGAAGTTACTATTATTAACACAG
CAAAGAAGCACCAAGCTAATGAGACGCGTCTTACCATCGGGAAACCAACT
CCCAACAACACAGTGTATGTGTTGGAGCGAGATACCCGCAAACCTTGCCC
TATCGGTGATGTCGGTGAAATGTGGGCTGGAGGGGACTGCGTCTCAAAAG
GATATTTGGGCAATGCTGAGCTTACCAGGGAGCGTTTTGTGATGGACCCG
TTTCTTGGTGGTGACGCACGAATGTATCGCACTGGCGACTTAGGCCGGTG
GACCGATGATGGCGAGCTTGAACATTTTGGAAGGGTGGATGAACAGGTGA
AGGTGAAGGGGTTCCGTGTTGAACTGGATGGCGTATCTTCGGTGATTGAA
CACACTGTTGGAGTGAAGAAGGCTGTTGTGTTGAAATTGAATGAGTCTCT
CGTGGCCTTTGTCACCCCTGCCAACGTCAGTACAGACAAGGTGAAACGCA
TGGTTAGCGCACATCTACCGTATTATTGCGTCCCCGCACAGGTATTGTCC
ATGGAAGGTCTCCCTAGAACTGGAAATGGGAAGGTTGATAAACGTGCTTT
GCTCAGCGGGTTGTCAGGTAAGATCACTGGAAGTGCGCTCGAGAAGAGTG
AGACTAATGACACCTTGCACGTGGTCAAAGACGTCACTGCGAGAAAACTA
CTATCTTTCTCACCAGTTATCCAGAGTGCTTTGTATGGAGTTGTGGTCAT
GACGAACCTCATTCGGTATTTCCTTGCTGTGGTACGGAAAATAGCATGA
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