Ggra10811.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10811.t1
Unique Name	Ggra10811.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	557

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000192_pilon	contig	tig00000192_pilon:20280..21950 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	221103.XP_007847195.1
PFAMs	RPE65
Max annot lvl	4751\|Fungi
KEGG rclass	RC00912,RC01690
KEGG ko	ko:K17842
KEGG Reaction	R09782
KEGG Pathway	ko00906,ko01100,map00906,map01100
Evalue	8.21e-74
EggNOG OGs	COG3670@1\|root,KOG1285@2759\|Eukaryota,38DX7@33154\|Opisthokonta,3NYJJ@4751\|Fungi,3V4UA@5204\|Basidiomycota,228JK@155619\|Agaricomycetes,3W8SV@5338\|Agaricales
EC	1.13.11.59
Description	Carotenoid cleavage dioxygenase 1
COG category	Q
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10811	Ggra10811	Gracilaria gracilis GNS1m male	gene	tig00000192_pilon 20280..21950 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10811.t1.start1	Ggra10811.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000192_pilon 20280..20282 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10811.t1.CDS1	Ggra10811.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000192_pilon 20280..21950 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10811.t1.exon1	Ggra10811.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000192_pilon 20280..21950 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10811.t1.stop1	Ggra10811.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000192_pilon 21948..21950 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10811.t1	Ggra10811.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000192_pilon 20280..21950 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000192_pilon:20280..21950+
coding sequence from alignment at tig00000192_pilon:20280..21950+

mRNA sequence

>Ggra10811.t1 ID=Ggra10811.t1|Name=Ggra10811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=557bp
MPKTGFCFVTFTPSIPIIYVRTKVLLKPLGNIPYKRNTHDSLTATSKFAT
KIVNNAVASGMDTTSTRNLDIGLRTVPEHPQFINLNVSGTLPSYLSKSSL
FRVGPGRYEATHKDGREYKPRHWFDGLSVLHHFDINASLNQVSYRSRSLT
DPMVRQIESTKSSSYVDFTFGRSDPCRTLLGKFFQLWSPATIDPETKINA
PNVGVTVQYIPGKGICARTDSTSSVKFDENTLEIDHFFRVSEFAGPKSAQ
MSAAHGHYDARTGDFINFTFQFGPPKVQYTVFRVDRTGTSHMLATFRESP
RYIHSFATTEKYVILILWPLELNSLAVAFNKSIMDGMTFHKNQKTKFIVI
SRERNCIHATYTFGSFFCFHNINAYDAGDSVVIDLSLYEDASILDDFELD
KLRTSTDTSKSSFVRFTLDSLGENPLSSPREARMKVINSEPFELMRIHPD
KQRCEYRYAYGVTGIDYMFDAVAKVCVPTGERLIWKPKNGIVGEPIFVPN
PEGDGEDDGCLLVVVLNSEHKHSSMFVVDARSMKTIANADVPYIVPLGFH
GMFKRI*

spliced messenger RNA

>Ggra10811.t1 ID=Ggra10811.t1|Name=Ggra10811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00000192_pilon:20280..21950+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAAGACTGGCTTCTGCTTCGTGACTTTCACACCATCGATCCCCAT
CATATACGTGCGCACCAAGGTGCTGCTAAAACCACTTGGCAATATCCCGT
ATAAGAGAAACACGCACGATTCATTAACTGCGACATCGAAGTTTGCGACA
AAGATTGTGAATAACGCAGTAGCAAGTGGCATGGATACGACTTCAACCCG
CAACCTTGACATCGGTCTTCGTACTGTGCCAGAACACCCGCAGTTTATAA
ACTTGAATGTGAGCGGAACGCTTCCGTCATATCTTTCAAAATCCAGTCTG
TTCCGAGTTGGACCTGGTCGTTATGAGGCCACGCATAAGGACGGTCGTGA
ATACAAACCGCGTCACTGGTTCGACGGTCTTTCCGTACTGCATCATTTTG
ATATTAACGCCTCTCTCAATCAAGTATCATATCGAAGCCGAAGCTTAACT
GACCCGATGGTGCGTCAAATTGAGAGCACGAAGTCGTCGTCATATGTGGA
TTTTACGTTCGGAAGATCCGATCCATGCCGCACGTTACTCGGAAAATTCT
TTCAACTTTGGAGTCCGGCCACAATCGATCCCGAAACTAAGATAAATGCA
CCGAACGTCGGCGTCACAGTTCAATACATACCAGGAAAAGGCATTTGTGC
GCGCACTGATTCAACCTCGAGCGTCAAGTTCGACGAAAATACACTTGAGA
TTGATCACTTCTTCCGTGTTAGCGAGTTTGCTGGGCCGAAGTCAGCTCAA
ATGTCGGCAGCCCATGGTCACTATGATGCACGAACAGGTGATTTCATCAA
CTTTACATTCCAGTTTGGACCTCCGAAAGTACAATATACTGTGTTTCGAG
TAGATCGCACTGGAACCTCGCATATGCTTGCGACTTTCCGAGAGAGTCCT
AGATACATTCATTCGTTCGCAACAACGGAGAAGTACGTCATTCTCATCCT
GTGGCCACTTGAACTGAATAGTTTGGCCGTGGCATTCAACAAGTCTATTA
TGGATGGAATGACCTTTCACAAGAACCAGAAGACTAAGTTCATTGTTATT
TCACGTGAACGTAACTGTATCCATGCAACATACACGTTTGGCTCTTTCTT
CTGCTTCCACAATATCAATGCCTATGACGCCGGTGACTCTGTAGTTATTG
ACTTATCATTGTATGAAGATGCTTCGATACTTGATGACTTTGAACTGGAC
AAGCTGCGCACATCGACGGACACGTCCAAATCATCATTTGTACGATTCAC
GCTCGACTCTCTAGGCGAGAATCCCTTATCATCTCCGCGTGAAGCCCGGA
TGAAGGTTATCAATTCGGAGCCTTTTGAACTTATGCGCATTCATCCAGAT
AAACAGCGTTGTGAATATCGATACGCATACGGAGTCACGGGGATAGACTA
CATGTTTGACGCTGTCGCAAAAGTTTGCGTACCAACTGGAGAGCGTCTAA
TCTGGAAGCCTAAGAATGGGATTGTTGGCGAGCCCATATTCGTTCCAAAT
CCAGAAGGAGATGGTGAAGATGATGGTTGTCTCTTGGTTGTCGTATTGAA
CTCTGAGCACAAGCATTCGAGTATGTTCGTGGTAGATGCGAGGAGCATGA
AAACGATTGCCAACGCTGATGTTCCCTACATCGTGCCTCTTGGCTTTCAT
GGCATGTTCAAACGCATATGA

protein sequence of Ggra10811.t1

>Ggra10811.t1 ID=Ggra10811.t1|Name=Ggra10811.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=557bp
MPKTGFCFVTFTPSIPIIYVRTKVLLKPLGNIPYKRNTHDSLTATSKFAT
KIVNNAVASGMDTTSTRNLDIGLRTVPEHPQFINLNVSGTLPSYLSKSSL
FRVGPGRYEATHKDGREYKPRHWFDGLSVLHHFDINASLNQVSYRSRSLT
DPMVRQIESTKSSSYVDFTFGRSDPCRTLLGKFFQLWSPATIDPETKINA
PNVGVTVQYIPGKGICARTDSTSSVKFDENTLEIDHFFRVSEFAGPKSAQ
MSAAHGHYDARTGDFINFTFQFGPPKVQYTVFRVDRTGTSHMLATFRESP
RYIHSFATTEKYVILILWPLELNSLAVAFNKSIMDGMTFHKNQKTKFIVI
SRERNCIHATYTFGSFFCFHNINAYDAGDSVVIDLSLYEDASILDDFELD
KLRTSTDTSKSSFVRFTLDSLGENPLSSPREARMKVINSEPFELMRIHPD
KQRCEYRYAYGVTGIDYMFDAVAKVCVPTGERLIWKPKNGIVGEPIFVPN
PEGDGEDDGCLLVVVLNSEHKHSSMFVVDARSMKTIANADVPYIVPLGFH
GMFKRI*

mRNA from alignment at tig00000192_pilon:20280..21950+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10811.t1 ID=Ggra10811.t1|Name=Ggra10811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00000192_pilon:20280..21950+ (Gracilaria gracilis GNS1m male)
ATGCCAAAGACTGGCTTCTGCTTCGTGACTTTCACACCATCGATCCCCAT
CATATACGTGCGCACCAAGGTGCTGCTAAAACCACTTGGCAATATCCCGT
ATAAGAGAAACACGCACGATTCATTAACTGCGACATCGAAGTTTGCGACA
AAGATTGTGAATAACGCAGTAGCAAGTGGCATGGATACGACTTCAACCCG
CAACCTTGACATCGGTCTTCGTACTGTGCCAGAACACCCGCAGTTTATAA
ACTTGAATGTGAGCGGAACGCTTCCGTCATATCTTTCAAAATCCAGTCTG
TTCCGAGTTGGACCTGGTCGTTATGAGGCCACGCATAAGGACGGTCGTGA
ATACAAACCGCGTCACTGGTTCGACGGTCTTTCCGTACTGCATCATTTTG
ATATTAACGCCTCTCTCAATCAAGTATCATATCGAAGCCGAAGCTTAACT
GACCCGATGGTGCGTCAAATTGAGAGCACGAAGTCGTCGTCATATGTGGA
TTTTACGTTCGGAAGATCCGATCCATGCCGCACGTTACTCGGAAAATTCT
TTCAACTTTGGAGTCCGGCCACAATCGATCCCGAAACTAAGATAAATGCA
CCGAACGTCGGCGTCACAGTTCAATACATACCAGGAAAAGGCATTTGTGC
GCGCACTGATTCAACCTCGAGCGTCAAGTTCGACGAAAATACACTTGAGA
TTGATCACTTCTTCCGTGTTAGCGAGTTTGCTGGGCCGAAGTCAGCTCAA
ATGTCGGCAGCCCATGGTCACTATGATGCACGAACAGGTGATTTCATCAA
CTTTACATTCCAGTTTGGACCTCCGAAAGTACAATATACTGTGTTTCGAG
TAGATCGCACTGGAACCTCGCATATGCTTGCGACTTTCCGAGAGAGTCCT
AGATACATTCATTCGTTCGCAACAACGGAGAAGTACGTCATTCTCATCCT
GTGGCCACTTGAACTGAATAGTTTGGCCGTGGCATTCAACAAGTCTATTA
TGGATGGAATGACCTTTCACAAGAACCAGAAGACTAAGTTCATTGTTATT
TCACGTGAACGTAACTGTATCCATGCAACATACACGTTTGGCTCTTTCTT
CTGCTTCCACAATATCAATGCCTATGACGCCGGTGACTCTGTAGTTATTG
ACTTATCATTGTATGAAGATGCTTCGATACTTGATGACTTTGAACTGGAC
AAGCTGCGCACATCGACGGACACGTCCAAATCATCATTTGTACGATTCAC
GCTCGACTCTCTAGGCGAGAATCCCTTATCATCTCCGCGTGAAGCCCGGA
TGAAGGTTATCAATTCGGAGCCTTTTGAACTTATGCGCATTCATCCAGAT
AAACAGCGTTGTGAATATCGATACGCATACGGAGTCACGGGGATAGACTA
CATGTTTGACGCTGTCGCAAAAGTTTGCGTACCAACTGGAGAGCGTCTAA
TCTGGAAGCCTAAGAATGGGATTGTTGGCGAGCCCATATTCGTTCCAAAT
CCAGAAGGAGATGGTGAAGATGATGGTTGTCTCTTGGTTGTCGTATTGAA
CTCTGAGCACAAGCATTCGAGTATGTTCGTGGTAGATGCGAGGAGCATGA
AAACGATTGCCAACGCTGATGTTCCCTACATCGTGCCTCTTGGCTTTCAT
GGCATGTTCAAACGCATATGA

Coding sequence (CDS) from alignment at tig00000192_pilon:20280..21950+

>Ggra10811.t1 ID=Ggra10811.t1|Name=Ggra10811.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1671bp|location=Sequence derived from alignment at tig00000192_pilon:20280..21950+ (Gracilaria gracilis GNS1m male)
ATGCCAAAGACTGGCTTCTGCTTCGTGACTTTCACACCATCGATCCCCAT
CATATACGTGCGCACCAAGGTGCTGCTAAAACCACTTGGCAATATCCCGT
ATAAGAGAAACACGCACGATTCATTAACTGCGACATCGAAGTTTGCGACA
AAGATTGTGAATAACGCAGTAGCAAGTGGCATGGATACGACTTCAACCCG
CAACCTTGACATCGGTCTTCGTACTGTGCCAGAACACCCGCAGTTTATAA
ACTTGAATGTGAGCGGAACGCTTCCGTCATATCTTTCAAAATCCAGTCTG
TTCCGAGTTGGACCTGGTCGTTATGAGGCCACGCATAAGGACGGTCGTGA
ATACAAACCGCGTCACTGGTTCGACGGTCTTTCCGTACTGCATCATTTTG
ATATTAACGCCTCTCTCAATCAAGTATCATATCGAAGCCGAAGCTTAACT
GACCCGATGGTGCGTCAAATTGAGAGCACGAAGTCGTCGTCATATGTGGA
TTTTACGTTCGGAAGATCCGATCCATGCCGCACGTTACTCGGAAAATTCT
TTCAACTTTGGAGTCCGGCCACAATCGATCCCGAAACTAAGATAAATGCA
CCGAACGTCGGCGTCACAGTTCAATACATACCAGGAAAAGGCATTTGTGC
GCGCACTGATTCAACCTCGAGCGTCAAGTTCGACGAAAATACACTTGAGA
TTGATCACTTCTTCCGTGTTAGCGAGTTTGCTGGGCCGAAGTCAGCTCAA
ATGTCGGCAGCCCATGGTCACTATGATGCACGAACAGGTGATTTCATCAA
CTTTACATTCCAGTTTGGACCTCCGAAAGTACAATATACTGTGTTTCGAG
TAGATCGCACTGGAACCTCGCATATGCTTGCGACTTTCCGAGAGAGTCCT
AGATACATTCATTCGTTCGCAACAACGGAGAAGTACGTCATTCTCATCCT
GTGGCCACTTGAACTGAATAGTTTGGCCGTGGCATTCAACAAGTCTATTA
TGGATGGAATGACCTTTCACAAGAACCAGAAGACTAAGTTCATTGTTATT
TCACGTGAACGTAACTGTATCCATGCAACATACACGTTTGGCTCTTTCTT
CTGCTTCCACAATATCAATGCCTATGACGCCGGTGACTCTGTAGTTATTG
ACTTATCATTGTATGAAGATGCTTCGATACTTGATGACTTTGAACTGGAC
AAGCTGCGCACATCGACGGACACGTCCAAATCATCATTTGTACGATTCAC
GCTCGACTCTCTAGGCGAGAATCCCTTATCATCTCCGCGTGAAGCCCGGA
TGAAGGTTATCAATTCGGAGCCTTTTGAACTTATGCGCATTCATCCAGAT
AAACAGCGTTGTGAATATCGATACGCATACGGAGTCACGGGGATAGACTA
CATGTTTGACGCTGTCGCAAAAGTTTGCGTACCAACTGGAGAGCGTCTAA
TCTGGAAGCCTAAGAATGGGATTGTTGGCGAGCCCATATTCGTTCCAAAT
CCAGAAGGAGATGGTGAAGATGATGGTTGTCTCTTGGTTGTCGTATTGAA
CTCTGAGCACAAGCATTCGAGTATGTTCGTGGTAGATGCGAGGAGCATGA
AAACGATTGCCAACGCTGATGTTCCCTACATCGTGCCTCTTGGCTTTCAT
GGCATGTTCAAACGCATATGA