Ggra10807.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10807.t1
Unique NameGgra10807.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:6458..10300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog51511.ENSCSAVP00000001864
Max annot lvl33208|Metazoa
Evalue1.44e-05
EggNOG OGs2DZF1@1|root,2S6ZE@2759|Eukaryota,3A9R8@33154|Opisthokonta,3BUW4@33208|Metazoa,3DB8J@33213|Bilateria,48GVR@7711|Chordata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10807Ggra10807Gracilaria gracilis GNS1m malegenetig00000192_pilon 6458..10300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10807.t1Ggra10807.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 6458..10300 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10807.t1.stop1Ggra10807.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 6458..6460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10807.t1.CDS1Ggra10807.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 6458..6786 -
Ggra10807.t1.CDS2Ggra10807.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000192_pilon 6959..7282 -
Ggra10807.t1.CDS3Ggra10807.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000192_pilon 7427..7651 -
Ggra10807.t1.CDS4Ggra10807.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000192_pilon 10105..10300 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10807.t1.exon1Ggra10807.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 6458..6786 -
Ggra10807.t1.exon2Ggra10807.t1.exon2Gracilaria gracilis GNS1m maleexontig00000192_pilon 6959..7282 -
Ggra10807.t1.exon3Ggra10807.t1.exon3Gracilaria gracilis GNS1m maleexontig00000192_pilon 7427..7651 -
Ggra10807.t1.exon4Ggra10807.t1.exon4Gracilaria gracilis GNS1m maleexontig00000192_pilon 10105..10300 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10807.t1.intron1Ggra10807.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000192_pilon 6787..6958 -
Ggra10807.t1.intron2Ggra10807.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000192_pilon 7283..7426 -
Ggra10807.t1.intron3Ggra10807.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000192_pilon 7652..10104 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10807.t1.start1Ggra10807.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 10298..10300 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10807.t1 ID=Ggra10807.t1|Name=Ggra10807.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MPRASWFVDENSVDIEELIAEDLENLEHRDGTPHSYNQPQLPHDYLAHPT
PNCAESNAANTNGTLHAHHGCISGVARFYISVHQQISCSPLSNGAAAVSE
IFAVIRVEQRKIRLVLRASESADNVCMTIDETHIVKPVQAKAVNELCTIA
MKSKKEKQRVHAQQTASASEQMSGQKQSFEDKEGVALEHVFMNVISKGAH
MVMPTCYRYVTESEGDEHAGNSRGSPIAFIEAFMQQETTIRDTLKKAEGK
ALVNVGNDATTGNGCLNKAIKFLFTANGKLQMSWGDSFDLEILTSVSGKL
QNLCAEILEYSSRIDCRCGSYSLLTTDAVLKVTMNPTDRKLQTGARGARY
YFLVFCG*
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spliced messenger RNA

>Ggra10807.t1 ID=Ggra10807.t1|Name=Ggra10807.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000192_pilon:6458..10300- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGCGCCTCCTGGTTTGTTGATGAGAACAGCGTGGACATCGAGGA
GCTTATTGCGGAAGATCTCGAGAATCTTGAGCACAGAGACGGCACTCCAC
ACTCTTATAATCAACCACAACTACCACATGACTACCTCGCACATCCTACA
CCAAACTGCGCGGAATCCAATGCGGCTAATACAAACGGGACATTGCATGC
TCATCATGGATGCATCTCTGGAGTGGCTCGATTCTACATTAGCGTCCATC
AGCAGATTTCTTGTTCGCCATTATCAAATGGCGCCGCTGCTGTTTCCGAA
ATTTTTGCCGTCATTCGTGTGGAGCAACGCAAAATTCGTCTGGTGTTGCG
CGCAAGTGAGTCGGCTGACAATGTGTGTATGACCATTGATGAAACTCACA
TCGTCAAACCGGTGCAGGCGAAGGCCGTCAATGAGCTTTGTACAATTGCC
ATGAAGAGCAAGAAAGAGAAGCAAAGAGTGCATGCACAGCAGACCGCATC
CGCCTCTGAACAGATGTCAGGGCAAAAGCAAAGCTTCGAAGACAAGGAAG
GAGTTGCATTGGAGCATGTGTTTATGAATGTGATCTCGAAAGGAGCGCAC
ATGGTGATGCCAACGTGCTATCGATATGTGACAGAAAGCGAAGGGGATGA
GCATGCTGGGAACAGTAGGGGCTCGCCTATTGCGTTTATTGAGGCTTTCA
TGCAGCAGGAAACGACAATTCGGGATACTCTGAAGAAGGCAGAAGGTAAG
GCTCTTGTGAATGTAGGGAATGACGCCACCACCGGCAATGGTTGCCTGAA
CAAGGCAATCAAGTTCTTATTCACGGCGAATGGCAAGTTACAAATGTCTT
GGGGTGACTCGTTTGACCTTGAGATCCTTACAAGCGTTTCCGGCAAGCTC
CAGAACCTCTGCGCTGAGATACTCGAGTATAGCAGCAGAATAGACTGCCG
CTGTGGCTCCTACTCGCTCTTGACGACTGACGCGGTTCTTAAGGTGACAA
TGAATCCGACCGACCGGAAATTGCAGACCGGCGCAAGAGGAGCGAGATAT
TACTTTCTTGTGTTCTGTGGATGA
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protein sequence of Ggra10807.t1

>Ggra10807.t1 ID=Ggra10807.t1|Name=Ggra10807.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MPRASWFVDENSVDIEELIAEDLENLEHRDGTPHSYNQPQLPHDYLAHPT
PNCAESNAANTNGTLHAHHGCISGVARFYISVHQQISCSPLSNGAAAVSE
IFAVIRVEQRKIRLVLRASESADNVCMTIDETHIVKPVQAKAVNELCTIA
MKSKKEKQRVHAQQTASASEQMSGQKQSFEDKEGVALEHVFMNVISKGAH
MVMPTCYRYVTESEGDEHAGNSRGSPIAFIEAFMQQETTIRDTLKKAEGK
ALVNVGNDATTGNGCLNKAIKFLFTANGKLQMSWGDSFDLEILTSVSGKL
QNLCAEILEYSSRIDCRCGSYSLLTTDAVLKVTMNPTDRKLQTGARGARY
YFLVFCG*
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mRNA from alignment at tig00000192_pilon:6458..10300-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10807.t1 ID=Ggra10807.t1|Name=Ggra10807.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3843bp|location=Sequence derived from alignment at tig00000192_pilon:6458..10300- (Gracilaria gracilis GNS1m male)
ATGCCTCGCGCCTCCTGGTTTGTTGATGAGAACAGCGTGGACATCGAGGA
GCTTATTGCGGAAGATCTCGAGAATCTTGAGCACAGAGACGGCACTCCAC
ACTCTTATAATCAACCACAACTACCACATGACTACCTCGCACATCCTACA
CCAAACTGCGCGGAATCCAATGCGGCTAATACAAACGGGACATTGCGTAA
AGCGAGGACACACTTCGAGAATATTCTGAATCAATTGACATGTGTTCCAA
CATGCATATCCTTCCACAATCATTTTCCCCTGGCAACAAGTTTTTCGTCC
TTTGAGGAAGATGATCGACAGAATCTAGTGCGCGGTATGTTATTGTGTCT
TTGTTCTCCGCGCGGACAAGCAAACTCACTCATAGTAACAGACTGCAGCA
AAGCCATCAGTAAGCGCAATGCACAACAGCGTAGTTCCGCAAGATCGTAC
AATTCGACACGGTACCAAATCAGAGGAAAATGGGTCTGTCAGTTTGGTTT
TGCGGCGGTCGTGCAACTTTACCCTAGAACAGTTCGTGCATTTGCAGTTA
CCGTTGCCGAAGAAAAGAAGTTCTCTTTACATCGAAACGAACACTGCAAA
GGACGGAAAGGCAAGCACTCATTACAGACCGTTACAGCACTCGCATTCCT
ACGTGGCTATGCTGCACTAAACGCTCTCGCTTGTCCAACGGGAAGGGGGT
CCGAGGAGGAATACCCGGTACAGTGGCTTAGTAGTGATGTGCGAAAAGAG
GTCGTCTACTTGTCGTACAAGGAATCATGGCTAGAAATTCTGCAGGCCGC
AGCAGCAGATTCTGTTGGAGTCCAACTCCCTCAGGAACCACTTTCGAGAA
CTGGTTTCCTCAAAGTTTGGAGATGCCACTATCCGACTCTTCGAATTTTC
AAAGCGGGGAGTGATTTCTGTGACCAGTGTACAACGCTTGTCAATTCGGC
ACGAAGCACCACGAACGATGATTTAAGAGAGACGTTGTTAAATGCCAGAC
TTCGTCATCGTAAGGAGGCATTGGAAGAGTTTGTGCTCTACCGCACAATA
CAGGCCACAAGCGCTTCGTCCCCTGCAGCGTCTCCCATCCATCTCATATT
TGATTTTGCCGAGAAGGTGCTTCTGCCGCATCTACTGCGTCAGCCGGGGC
AGCTCCATTTCGTAACAGGTCTGAAGTTTGATATATTTGGTGTATACAGC
AGCAGTTTCTCTCATTGCTACGTTTATGGTCTCCCCGAGGGACATTGGTT
TAATAACAAGACATGTAATGAAGTTGATTCAATGCTTCATCATGCGATTA
ACGAACATCACAGACGTGGCGTTATTACCGAACATCATAAGCGAATTCGC
CTACACGCTGATAATTGCAGTGGGCAGAACAAAAACCGATTTATGCTGTG
GTATCTGCTGTGGCGAATCTGTATGGGACATGAAGAGGAGATAACGTTGT
ACTTTTTGGTTGCAGGGCACACGAAGAATCGTTGTGACGCTGCATTTGGA
CTTGTGAAGAGACGTCTGAAGCAGTTGGACGTTTTCGGTCCGCAGGATAT
GATGAAAGTCTTGCACAGCAGCTCTTGTACAAATCAGGCCGTAAATGCAA
AGGAGGTGACATGGTTGGATTGGAAAGCGTTGTTAAAGCAGTTCTACACT
ATTCCGAACAATTTCAAGCTGTCAAACTATCACGTGTTTCGTTTCTCGAA
AGGTTATTCGGAGGGTGTTATGGTAAAGCATTTATCTTCTGACACATGCT
GGACGCGGTATAAACTTGTGAAGAGAGCGGTCACTGGTGAAATGATTCGT
GCGGCTAGTTTGCTTAGACGTAGTGGCGGTGGTCTGCTACTGTCCGTTAC
TCCATTGTCTGAAGTGCCATCTGCGCAAGACCACAACCGTGAAGCCTACT
TGTTCAAGAATGTCCTTGAGCGCTACTACAGGGACGACGACAACAGACGT
AAGCTGTACTTCGCAAGCGGAGAGGACTGGAAGAATGCTCTCTGAAGTAA
GTCAAGATCCCATAGAATCGTTCTGTATGCTTTTATTCTACATTGTCGTT
GATTTCTTAAGCTGATGCAAAGATTTCTACATATCTCCGTCGTTTGTCCA
CCATTTTTGAATATTGCAAGTTCCACTAAGAGCTGAGTGAAAGCTCTACA
ACTTCGGTCTCAAGTGTCAAAGGGGGTTTTCTGAAGTAAATTGGCCATTT
CTCAGCTCTTCCCAAAGCGCCATTTGGTGTTTTTGATATGGATCGTCACA
CACATGCTCGGGATATTTTTGGGGCATCCGCCAAAATTTCATTGAAGCTG
CCACCTTGCACAGGTGCACTTGCAGTTGGTTTCGGTGCGCGCAAACTTAC
GCACCCTTCCACACGCGCGAGCCGAGCGCAGCCTTCCCGCCCATCGTCGT
GCACAATCGCCCCCGCCTTCCGAGTCGTCCTCCTTGCCAATCCAACTCAC
ACGGCCCGTCAATGGCTTGAGCACGCACGTATCAGAAGGACGCTCACGTC
ATCCACGCCAGGACTGCCCTTCGATACTTTCCTACAATCGTTGCCATGGC
TTTCCAACTCACACTGTGCGCCGCAATCTAGTCAACATGCCACAAATAGT
TGCAATGCTTGTAAGAGTGTCAGCGCCAACTGTTGTGGCGTGAATGCAGA
TGCTCATCATGGATGCATCTCTGGAGTGGCTCGATTCTACATTAGCGTCC
ATCAGCAGATTTCTTGTTCGCCATTATCAAATGGCGCCGCTGCTGTTTCC
GAAATTTTTGCCGTCATTCGTGTGGAGCAACGCAAAATTCGTCTGGTGTT
GCGCGCAAGTGAGTCGGCTGACAATGTGTGTATGACCATTGATGAAACTC
ACATCGTCAAACCGGTGCAGGCGAGTAAGCAACAAGACGTGCATAAGATA
CATTTTCCGTTTCCATTCATCATTTTGGTGGTTCAAAACCGAGCACCGCT
TTCGGCGGATAGTTGTGATGCACGGGCCGCGAGCGTTGGTTAACTGAGGA
GGTTTGACGATCTGAAAGAGGCCGTCAATGAGCTTTGTACAATTGCCATG
AAGAGCAAGAAAGAGAAGCAAAGAGTGCATGCACAGCAGACCGCATCCGC
CTCTGAACAGATGTCAGGGCAAAAGCAAAGCTTCGAAGACAAGGAAGGAG
TTGCATTGGAGCATGTGTTTATGAATGTGATCTCGAAAGGAGCGCACATG
GTGATGCCAACGTGCTATCGATATGTGACAGAAAGCGAAGGGGATGAGCA
TGCTGGGAACAGTAGGGGCTCGCCTATTGCGTTTATTGAGGCTTTCATGC
AGCAGGAAACGACAATTCGGGATACTCTGAAGAAGGCAGAAGGTGGGTAC
ACTTTGCAAGACGAAAATGGACATCTGTGGAACAGAGGCCCACCAAGAAT
GGAGCAAAGACGCAGAGAACAAGCTAGCTTTTCAAGACGGACAAGGACAG
ATGATGGGAAGGGGGGAATATCATTTATTCCATTTGTGAGCTTTTCTTGG
AACCTTTCTTAAAGGTAAGGCTCTTGTGAATGTAGGGAATGACGCCACCA
CCGGCAATGGTTGCCTGAACAAGGCAATCAAGTTCTTATTCACGGCGAAT
GGCAAGTTACAAATGTCTTGGGGTGACTCGTTTGACCTTGAGATCCTTAC
AAGCGTTTCCGGCAAGCTCCAGAACCTCTGCGCTGAGATACTCGAGTATA
GCAGCAGAATAGACTGCCGCTGTGGCTCCTACTCGCTCTTGACGACTGAC
GCGGTTCTTAAGGTGACAATGAATCCGACCGACCGGAAATTGCAGACCGG
CGCAAGAGGAGCGAGATATTACTTTCTTGTGTTCTGTGGATGA
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Coding sequence (CDS) from alignment at tig00000192_pilon:6458..10300-

>Ggra10807.t1 ID=Ggra10807.t1|Name=Ggra10807.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000192_pilon:6458..10300- (Gracilaria gracilis GNS1m male)
ATGCCTCGCGCCTCCTGGTTTGTTGATGAGAACAGCGTGGACATCGAGGA
GCTTATTGCGGAAGATCTCGAGAATCTTGAGCACAGAGACGGCACTCCAC
ACTCTTATAATCAACCACAACTACCACATGACTACCTCGCACATCCTACA
CCAAACTGCGCGGAATCCAATGCGGCTAATACAAACGGGACATTGCATGC
TCATCATGGATGCATCTCTGGAGTGGCTCGATTCTACATTAGCGTCCATC
AGCAGATTTCTTGTTCGCCATTATCAAATGGCGCCGCTGCTGTTTCCGAA
ATTTTTGCCGTCATTCGTGTGGAGCAACGCAAAATTCGTCTGGTGTTGCG
CGCAAGTGAGTCGGCTGACAATGTGTGTATGACCATTGATGAAACTCACA
TCGTCAAACCGGTGCAGGCGAAGGCCGTCAATGAGCTTTGTACAATTGCC
ATGAAGAGCAAGAAAGAGAAGCAAAGAGTGCATGCACAGCAGACCGCATC
CGCCTCTGAACAGATGTCAGGGCAAAAGCAAAGCTTCGAAGACAAGGAAG
GAGTTGCATTGGAGCATGTGTTTATGAATGTGATCTCGAAAGGAGCGCAC
ATGGTGATGCCAACGTGCTATCGATATGTGACAGAAAGCGAAGGGGATGA
GCATGCTGGGAACAGTAGGGGCTCGCCTATTGCGTTTATTGAGGCTTTCA
TGCAGCAGGAAACGACAATTCGGGATACTCTGAAGAAGGCAGAAGGTAAG
GCTCTTGTGAATGTAGGGAATGACGCCACCACCGGCAATGGTTGCCTGAA
CAAGGCAATCAAGTTCTTATTCACGGCGAATGGCAAGTTACAAATGTCTT
GGGGTGACTCGTTTGACCTTGAGATCCTTACAAGCGTTTCCGGCAAGCTC
CAGAACCTCTGCGCTGAGATACTCGAGTATAGCAGCAGAATAGACTGCCG
CTGTGGCTCCTACTCGCTCTTGACGACTGACGCGGTTCTTAAGGTGACAA
TGAATCCGACCGACCGGAAATTGCAGACCGGCGCAAGAGGAGCGAGATAT
TACTTTCTTGTGTTCTGTGGATGA
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