Ggra10806.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10806.t1
Unique NameGgra10806.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000163_piloncontigtig00000163_pilon:17286..22522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10806Ggra10806Gracilaria gracilis GNS1m malegenetig00000163_pilon 17286..22522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10806.t1Ggra10806.t1Gracilaria gracilis GNS1m malepolypeptidetig00000163_pilon 17286..22522 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10806.t1.start1Ggra10806.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000163_pilon 17286..17288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10806.t1.CDS1Ggra10806.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000163_pilon 17286..17335 +
Ggra10806.t1.CDS2Ggra10806.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000163_pilon 17394..17416 +
Ggra10806.t1.CDS3Ggra10806.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000163_pilon 17504..17524 +
Ggra10806.t1.CDS4Ggra10806.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000163_pilon 22179..22522 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10806.t1.exon1Ggra10806.t1.exon1Gracilaria gracilis GNS1m maleexontig00000163_pilon 17286..17335 +
Ggra10806.t1.exon2Ggra10806.t1.exon2Gracilaria gracilis GNS1m maleexontig00000163_pilon 17394..17416 +
Ggra10806.t1.exon3Ggra10806.t1.exon3Gracilaria gracilis GNS1m maleexontig00000163_pilon 17504..17524 +
Ggra10806.t1.exon4Ggra10806.t1.exon4Gracilaria gracilis GNS1m maleexontig00000163_pilon 22179..22522 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10806.t1.intron1Ggra10806.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000163_pilon 17336..17393 +
Ggra10806.t1.intron2Ggra10806.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000163_pilon 17417..17503 +
Ggra10806.t1.intron3Ggra10806.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000163_pilon 17525..22178 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10806.t1.stop1Ggra10806.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000163_pilon 22520..22522 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10806.t1 ID=Ggra10806.t1|Name=Ggra10806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=146bp
MEGEQKKQPRYCPSCGQEFLSGRTPAYRAHTHDARNIEYFEKHEWHGSLG
NGLVRLKPDGGRICENAFPSSSSNIEALRRGHLVLQDLLLLGPIVLRVTR
HGLRKELVSAEEVQEVKEYLQKQIIGAALQDSVFGRSVHPIPTEQ*
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spliced messenger RNA

>Ggra10806.t1 ID=Ggra10806.t1|Name=Ggra10806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00000163_pilon:17286..22522+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggagggagaacagaaaaagcaacctaggtactgcccaagttgtggaca
agagtttctatccggaaggaccccagcttaccgagcccacacgcACGACG
CAAGGAATATTGAGTACTTTGAGAAACATGAATGGCATGGAAGTTTAGGG
AATGGGCTCGTACGCCTCAAACCAGATGGAGGACGAATTTGCGAAAATGC
ATTCCCTAGTTCTTCGTCCAATATTGAAGCCTTGAGAAGAGGTCATTTAG
TTTTACAGGACCTGTTGCTTCTCGGACCAATTGTGTTGCGGGTGACACGT
CATGGTCTTCGGAAGGAGCTTGTGAGTGCAGAGGAAGTGCAAGAAGTCAA
GGAGTATTTACAGAAGCAAATTATTGGCGCTGCTCTTCAAGATTCTGTTT
TTGGACGTAGCGTACACCCTATACCCACCGAACAGTGA
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protein sequence of Ggra10806.t1

>Ggra10806.t1 ID=Ggra10806.t1|Name=Ggra10806.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=146bp
MEGEQKKQPRYCPSCGQEFLSGRTPAYRAHTHDARNIEYFEKHEWHGSLG
NGLVRLKPDGGRICENAFPSSSSNIEALRRGHLVLQDLLLLGPIVLRVTR
HGLRKELVSAEEVQEVKEYLQKQIIGAALQDSVFGRSVHPIPTEQ*
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mRNA from alignment at tig00000163_pilon:17286..22522+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10806.t1 ID=Ggra10806.t1|Name=Ggra10806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=5237bp|location=Sequence derived from alignment at tig00000163_pilon:17286..22522+ (Gracilaria gracilis GNS1m male)
atggagggagaacagaaaaagcaacctaggtactgcccaagttgtggaca
gtaagttccaagtatcttgcggtcttctaccgttaaatatgttctgaccc
gtcttcagagagtttctatccggaaggacccgtaagttcatcggatgaga
aggtccccatttcattcggagtcttttttggagacataatgactgacatt
acctcgttttgtatgcagcagcttaccgagcccacacgcgtacctgcaag
agcaatacccccaagaaaacgaaacctacttcgacgacaaccgtgtcatc
ttcgcaaaagtaacgaacgaaagtttcgatggcacaaggaaaccattcgt
gctttactgacaagtgaatcaattcatcactatgttttgcatctgcttgg
ctttgttactcctggtatctgaaatagattctcatttaacgatttcgcga
atgtgttagacttttaaagatggtagtggaattaaattgggttaggcata
tgttgttaatattgttgacctcttctgcgttaaatcaagagcggcaacac
aacaggtttgcaatacgatgcataaatttggtcgtagattgtggagacgt
tagggtctgattgaatttactgtgtttgaggtcaatgcagtattccgtgg
tgggaggctacgactaaagttcgtattcgtattgttaatactgaaacttt
acagcgtaccttcaagcaatgtgtttgtacggcagcgttcagtgttcaca
gtcccggtagacggggaactctagctccttccgaaaattgcgacggccac
aatcctcagaatggcggaagaggtcgtacatcactaaccgtagttggatg
gctagtaacccatccacaaaattgactagttctctaagtcgttccatgct
ctcgaattctgaccacagctctaggtacaagtcaagatcctccgttttgc
caccacacctctcagaaaagtcaagcgcgtctagaaagggaacatcccac
cgggtgtacgcaaagtcaatgaatatcagcttagattgttcagctggaat
aatgttcacaggacacaaatcaccatgaaccaaggctaatggcactttgt
attcggcaatgttgttcagtacattgtgcacatggctcaagtacatttct
ttgtaacagcctttatattcagagttgcctacattttccataccacgctc
ctgagcacactgccagtcgggatcttcaaccatttccttcacgcgagaga
tccatttttctctgttcattaatggaagcccagtctccagaatttcatct
tttttcgacaaagactgtatctggactttgccccatgtcaataggatgtt
tcgaaacaactgcacgtccaactttgcaagatcatccatatccgacaagg
tacgtccataatctctcatcaacagaatattgttcgcaacatccaaggct
aaaggtttcggaaaggtctcaggcattacttgactcagacctaacgtcgt
gcttgtttcatgattaaaagcttgtggtagcatagccttcataaaaaact
ttgatccacatcgactttgtgccactagaaggcagctttgcgaaccgttc
cttttttggaggatatattccggtccaatttcgtatccatgctctagaag
aactcctgtgatccacgcagcagcgccatcaaaccatcctgcttttgagt
atggatagaggcggtttaaatgaatgtcaagaccatcggtcgcatactgt
ttcagatatcgtgcaacagcaggtgtgcgcggatcaatgcagatttcgcc
agtttcgcttttccggacccagcccaattcattcattttatctgacagtg
cgtagcgagggatatcaaacaccagcaattgaactttgtagaatggccca
tttagtacttcacactccgatcgcaacaagactatatcaaacggcaagca
taactgctttcgaacgtagattccaagtttgtctagttcaatgtctattg
catcatgatacacaatggaaggaagttgtgatgggctgcctttccatgtg
agaacgctttgattgccaggatgcacaataaggacatagtagcagttgcc
ggaacgttttgcatcggacataatgtgcggatggaagtTTAGGTTTAGGC
AAAGAGAATAAAAGGCACTCAACCGGCGACCACAAACCTTGTAACCACTG
ACCGGACCTGTTCGAGACACGCAGGCACGAAAACACGGTTCTATTTTTGC
ACAGTGACAGCGGCCACGATGACACCTAAAACAGCGTGGGGACGACGATG
GAAAAAATAACCACCGCAGCCAATGGAGACTGCACTATAACGAAGGTCGA
TGGTCTCGCCAATCGTGGCAGCGACGGGGACAATCGTGGACTCAAGAGTG
ACAGTTGTCCTTGTGGCGACAGCGAAGATCACAGCTAGCCACACAGCGAC
TACAGCTACCAACGGAACCTCACCGAGCAGTGGTCCTTCGCCATACATGA
GCGGTACACGTGGTCATTTCAACCAAACAGAAATTGTcgtgtactacgtg
gatgggaagaaatgggcgatccacgtggcataatcaaGCTCGGTCGAGAA
TGTCTTCAGCTCTACAATTATAACTGCTTTAGACGGCGCCGTAGAGCTGC
GTGCCGCAGAGCTATGCCTTTGCGTCTTTAGTTTCCGAAACCTTACCACC
AAGATCAAGACATACACCCCTCCAGAAAGGTTTTCGAAATAGGCATATTG
TCAAAAGCTACGATGCAGACTATACTGGAAAATATGCAAATTCGAATCCC
ATGCACTCCTCAGGCATCCTCTTGTGACGCCTGTTTCGAAGTCATTTCGA
GATCACCAAGTGTGAAAGGAGGACTTGTGAACCTATTCAAGGAAATTGCG
TCCGTGTATGAAAATTCCACTTGTCCTTCTGGGAAGCGTTTTCTGGATAT
GACCAGTGGTTCGATTGTGACACTTGATTGTTGCTGGAGCTGCGCCTCCA
GTCCACTAATGTCCGTGGAACCGAAGGTCACCGTGCGAAAATCTCCCTAT
CTCATCTCGAAAACAAATTTTGTTCTCCCTGGGGCAAATCGGCAGCTTAA
AATATGCCAGAAGGGACATCGATACACTTCAGTCACCtgttttggggaag
ttcccgagttctttattgttccggaatccgaaatgaatggaaagtacttt
attttcccgttcagtgtacatgagcacttcttcaacaaatggaaagtcgt
cggtgatgttcacgaagcttttaatgatattggtttctatgttcccaatc
catgttatcctcatttgcgagaGACATATACTGTTTATATTGCGCATCGA
GGGCGAGGGGGAATGACGGTAGTTACGACGGAACGAAAATTCTCTCTTTC
TCCTAATATGTTTACTCTTGATGAAGTGGTTGAGGGACGTCCCTTCGGAA
ACATGTGTGGAAAAGAACCAGTTATCAGAAGCCTTTTCCTTGACCCCGAT
ATCAGAGGAAGCTTTCAATTTCCCCCAATTACTGTGTCAAAGTCAAGAGG
CTCCCACGAAAAGAAGATCCCTCACTTTCCGATCGAAGGGGAGGAAGAAA
TGCCCTCGCCCTCAGAGGAAACAGAAGAGGAAGTTGAACTCCCAATCGAA
AATGATTTCCAGTTGGCCACTGCTGGCATTTTTTGttccagtgaagatga
agacacccgttcaatagaagcgttcccctcagctcagattTtaccgtttg
gggagtcttttgaagacattcacacactgcttcatcgaactctgaaacgc
tgtaagcagtcCCTTCCCATTATGTTCTTTTCTCAACGACAAATGCTTTC
ACTTCCGCACGCGGAAAGTCTTCGAGAACAGCTCTCTTCGAGTTGCCATG
TTATGGGCGTACATTCAGCAATTTCAATCCCGGAACTAAGGAGTCGAGTT
CGACGGAACGATTTTTTCCTCATCGCTGGGGATCTCGGAAATGTGTTAGA
GAACAGTCATCCACTTTGTTTACCATTTGCACCGAATGCTGAAGAAGCTT
CTCGGTGTATCCGACTAGCTTGGACGGTTGATATTGATTCCATTGATTCC
ATTACGGTTCCGCTTGGTGGAATTGCATTCGGAAATTGTGAAACGAGGAT
ACCCAAAGTGTTTCAGATTTACAACATATGTCCTTGGAAGTATTTGAAGA
AGAATAATAACTTTTGCAATATATCTCAGAACTTTGGCGAAATCTTTCCT
GGAGACTATTTTATCAACGAAAACCATAGCAGGCATCGCATTTCCAACTA
CAGCGTGCAAGcgaacgatgctattgccttcaaagcgtttgatattcaaa
cggctctatcttttGAACCATTGCCAGTACATGCCATTGTTCCTTCCTTC
ATTATAGAAAGAACCACTGCTGGGAATTGCGCTCTTTTACAAATCTTTCT
CACTTTTCTTGATACCGATGGAGACAATTCGGTGATGCATAATGGTGAAA
GAAGGTCACTGGCTCACAGGTTTTTTTGGTATTTGCTTACAGAGCTTTTA
TTGAGAGCACTTCGGCGAGTATGTGGGAAAGTTGATTCGTCTAAATTTCA
GAGTCGTCTCCCATGTTGCGCTGTTCCTAAAGATTGTAACGCAGATCATC
ACTTGAGACGTAAGGGACCAATGAGTGCCAGCTCAGTTGGAGATGTTCTT
GGAACAGGAAGGCTCACATTAGCTCTCTGCTATCTGGCGAGAGAGCTGAA
AGCCATTGAAACGTACTGCGAAGTGCCATCACATCTAACAGTGGCTTACT
TTTCCAATACCCAAAAGTATGACGCGCCGTTtgatcttctgaaatatttt
aagggaagcaaggagactctcgaggtactaaaaagACCAATAGACGACGC
AAGGAATATTGAGTACTTTGAGAAACATGAATGGCATGGAAGTTTAGGGA
ATGGGCTCGTACGCCTCAAACCAGATGGAGGACGAATTTGCGAAAATGCA
TTCCCTAGTTCTTCGTCCAATATTGAAGCCTTGAGAAGAGGTCATTTAGT
TTTACAGGACCTGTTGCTTCTCGGACCAATTGTGTTGCGGGTGACACGTC
ATGGTCTTCGGAAGGAGCTTGTGAGTGCAGAGGAAGTGCAAGAAGTCAAG
GAGTATTTACAGAAGCAAATTATTGGCGCTGCTCTTCAAGATTCTGTTTT
TGGACGTAGCGTACACCCTATACCCACCGAACAGTGA
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Coding sequence (CDS) from alignment at tig00000163_pilon:17286..22522+

>Ggra10806.t1 ID=Ggra10806.t1|Name=Ggra10806.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=438bp|location=Sequence derived from alignment at tig00000163_pilon:17286..22522+ (Gracilaria gracilis GNS1m male)
atggagggagaacagaaaaagcaacctaggtactgcccaagttgtggaca
agagtttctatccggaaggaccccagcttaccgagcccacacgcACGACG
CAAGGAATATTGAGTACTTTGAGAAACATGAATGGCATGGAAGTTTAGGG
AATGGGCTCGTACGCCTCAAACCAGATGGAGGACGAATTTGCGAAAATGC
ATTCCCTAGTTCTTCGTCCAATATTGAAGCCTTGAGAAGAGGTCATTTAG
TTTTACAGGACCTGTTGCTTCTCGGACCAATTGTGTTGCGGGTGACACGT
CATGGTCTTCGGAAGGAGCTTGTGAGTGCAGAGGAAGTGCAAGAAGTCAA
GGAGTATTTACAGAAGCAAATTATTGGCGCTGCTCTTCAAGATTCTGTTT
TTGGACGTAGCGTACACCCTATACCCACCGAACAGTGA
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