Ggra10805.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10805.t2
Unique NameGgra10805.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000198_piloncontigtig00000198_pilon:71356..72615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10805Ggra10805Gracilaria gracilis GNS1m malegenetig00000198_pilon 71356..72615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10805.t2Ggra10805.t2Gracilaria gracilis GNS1m malepolypeptidetig00000198_pilon 71356..72615 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10805.t2.stop1Ggra10805.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000198_pilon 71356..71358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10805.t2.CDS1Ggra10805.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000198_pilon 71356..71852 -
Ggra10805.t2.CDS2Ggra10805.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000198_pilon 72216..72615 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10805.t2.exon1Ggra10805.t2.exon1Gracilaria gracilis GNS1m maleexontig00000198_pilon 71356..71852 -
Ggra10805.t2.exon2Ggra10805.t2.exon2Gracilaria gracilis GNS1m maleexontig00000198_pilon 72216..72615 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10805.t2.intron1Ggra10805.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000198_pilon 71853..72215 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10805.t2.start1Ggra10805.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000198_pilon 72613..72615 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10805.t2 ID=Ggra10805.t2|Name=Ggra10805.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=299bp
MTVLRINEGIRFFNCPETYLIRYRTPNVTPMIIRWPTLETPSFIHSSADS
HKWCLRNQRKNRVEMFPVHSTRANFTNAVKEISPLLKEIRDFGCELDENG
LWTRIEGRAFVNADVQAVITYLDTVAFSYSLCTHLVGKSFRWMDDCYRPG
VGNSVTVYAKMTVVKIGDLYRFFNCPETYLIRYRTPELTPMIIKYPPLTY
DWSSQESGSWSTAQNDKWCNQNQKRARVEMFPVEETRANFTKALKRIMPY
MREIRDFGCETDEDGFWTEVQGRAYENVDVQQVMTYLETIAFQYSLCI*
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spliced messenger RNA

>Ggra10805.t2 ID=Ggra10805.t2|Name=Ggra10805.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000198_pilon:71356..72615- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTGCTGCGAATCAACGAAGGCATCCGCTTCTTCAACTGCCCGGA
GACCTACCTCATTCGCTATCGCACCCCGAACGTCACCCCGATGATCATCA
GATGGCCCACTCTGGAAACGCCTTCCTTCATTCACAGCAGTGCAGACAGT
CACAAATGGTGTCTGCGCAATCAGAGGAAGAACAGGGTGGAGATGTTTCC
AGTGCATTCTACACGCGCCAATTTTACGAACGCCGTCAAGGAAATAAGCC
CGCTTCTAAAAGAGATTCGTGACTTCGGCTGTGAGCTTGATGAGAATGGG
CTCTGGACTCGAATTGAAGGAAGGGCGTTTGTCAATGCCGATGTGCAGGC
CGTCATCACGTATCTTGACACCGTTGCGTTTTCTTACTCACTCTGTACAC
ATCTCGTGGGCAAATCGTTTAGATGGATGGATGATTGCTATCGTCCGGGT
GTAGGAAATTCAGTTACAGTCTATGCCAAGATGACCGTGGTGAAAATAGG
CGACCTCTATCGCTTCTTCAACTGCCCAGAGACTTACCTCATTCGCTACC
GAACCCCAGAGTTGACTCCGATGATAATCAAATACCCTCCTCTTACTTAC
GATTGGAGCAGCCAGGAATCCGGCTCGTGGAGCACCGCTCAAAACGATAA
ATGGTGCAACCAAAATCAGAAGAGAGCCAGGGTTGAAATGTTCCCCGTTG
AGGAGACGCGAGCCAACTTCACGAAGGCTTTGAAGCGAATTATGCCATAC
ATGCGAGAGATCCGAGATTTTGGGTGTGAGACTGACGAGGACGGATTCTG
GACTGAGGTGCAGGGAAGGGCGTACGAAAATGTTGATGTGCAGCAAGTCA
TGACATATCTTGAGACAATTGCCTTCCAGTATTCCTTGTGCATTTAA
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protein sequence of Ggra10805.t2

>Ggra10805.t2 ID=Ggra10805.t2|Name=Ggra10805.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=299bp
MTVLRINEGIRFFNCPETYLIRYRTPNVTPMIIRWPTLETPSFIHSSADS
HKWCLRNQRKNRVEMFPVHSTRANFTNAVKEISPLLKEIRDFGCELDENG
LWTRIEGRAFVNADVQAVITYLDTVAFSYSLCTHLVGKSFRWMDDCYRPG
VGNSVTVYAKMTVVKIGDLYRFFNCPETYLIRYRTPELTPMIIKYPPLTY
DWSSQESGSWSTAQNDKWCNQNQKRARVEMFPVEETRANFTKALKRIMPY
MREIRDFGCETDEDGFWTEVQGRAYENVDVQQVMTYLETIAFQYSLCI*
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mRNA from alignment at tig00000198_pilon:71356..72615-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10805.t2 ID=Ggra10805.t2|Name=Ggra10805.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000198_pilon:71356..72615- (Gracilaria gracilis GNS1m male)
ATGACCGTGCTGCGAATCAACGAAGGCATCCGCTTCTTCAACTGCCCGGA
GACCTACCTCATTCGCTATCGCACCCCGAACGTCACCCCGATGATCATCA
GATGGCCCACTCTGGAAACGCCTTCCTTCATTCACAGCAGTGCAGACAGT
CACAAATGGTGTCTGCGCAATCAGAGGAAGAACAGGGTGGAGATGTTTCC
AGTGCATTCTACACGCGCCAATTTTACGAACGCCGTCAAGGAAATAAGCC
CGCTTCTAAAAGAGATTCGTGACTTCGGCTGTGAGCTTGATGAGAATGGG
CTCTGGACTCGAATTGAAGGAAGGGCGTTTGTCAATGCCGATGTGCAGGC
CGTCATCACGTATCTTGACACCGTTGCGTTTTCTTACTCACTCTGTACAC
GTACTTAGACTTTGCCATTCAAAACTTAATTAAAGCTGTGTACATGTAGT
TTTTGACGTTACAATTGCCAATTACTCATGCTACAACGTGTGCGAGTGCA
CACGTATTCCACAAATTGTATCTTGGTGCGTTGTTTCAGTGTCAAGCTCA
TAACCGAAACACATTTTCCTGCCCAAAACGTTCGAGTTCGTTGCAGCGAT
GTGCTGTGCTCGAATGATACCGTTGGTAGAACGTTACATGGTACATGGTA
CCGTTGGTAACTTAGTGATATCATGAACTCCCGTGTAGTCGCCGTCGCTT
TTCTGTCCATCATCTACTTCAGCCGGGCGCAACAATGCCCCCGCTCTCTT
CCACTGTCGAAAGATCTCGTGGGCAAATCGTTTAGATGGATGGATGATTG
CTATCGTCCGGGTGTAGGAAATTCAGTTACAGTCTATGCCAAGATGACCG
TGGTGAAAATAGGCGACCTCTATCGCTTCTTCAACTGCCCAGAGACTTAC
CTCATTCGCTACCGAACCCCAGAGTTGACTCCGATGATAATCAAATACCC
TCCTCTTACTTACGATTGGAGCAGCCAGGAATCCGGCTCGTGGAGCACCG
CTCAAAACGATAAATGGTGCAACCAAAATCAGAAGAGAGCCAGGGTTGAA
ATGTTCCCCGTTGAGGAGACGCGAGCCAACTTCACGAAGGCTTTGAAGCG
AATTATGCCATACATGCGAGAGATCCGAGATTTTGGGTGTGAGACTGACG
AGGACGGATTCTGGACTGAGGTGCAGGGAAGGGCGTACGAAAATGTTGAT
GTGCAGCAAGTCATGACATATCTTGAGACAATTGCCTTCCAGTATTCCTT
GTGCATTTAA
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Coding sequence (CDS) from alignment at tig00000198_pilon:71356..72615-

>Ggra10805.t2 ID=Ggra10805.t2|Name=Ggra10805.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00000198_pilon:71356..72615- (Gracilaria gracilis GNS1m male)
ATGACCGTGCTGCGAATCAACGAAGGCATCCGCTTCTTCAACTGCCCGGA
GACCTACCTCATTCGCTATCGCACCCCGAACGTCACCCCGATGATCATCA
GATGGCCCACTCTGGAAACGCCTTCCTTCATTCACAGCAGTGCAGACAGT
CACAAATGGTGTCTGCGCAATCAGAGGAAGAACAGGGTGGAGATGTTTCC
AGTGCATTCTACACGCGCCAATTTTACGAACGCCGTCAAGGAAATAAGCC
CGCTTCTAAAAGAGATTCGTGACTTCGGCTGTGAGCTTGATGAGAATGGG
CTCTGGACTCGAATTGAAGGAAGGGCGTTTGTCAATGCCGATGTGCAGGC
CGTCATCACGTATCTTGACACCGTTGCGTTTTCTTACTCACTCTGTACAC
ATCTCGTGGGCAAATCGTTTAGATGGATGGATGATTGCTATCGTCCGGGT
GTAGGAAATTCAGTTACAGTCTATGCCAAGATGACCGTGGTGAAAATAGG
CGACCTCTATCGCTTCTTCAACTGCCCAGAGACTTACCTCATTCGCTACC
GAACCCCAGAGTTGACTCCGATGATAATCAAATACCCTCCTCTTACTTAC
GATTGGAGCAGCCAGGAATCCGGCTCGTGGAGCACCGCTCAAAACGATAA
ATGGTGCAACCAAAATCAGAAGAGAGCCAGGGTTGAAATGTTCCCCGTTG
AGGAGACGCGAGCCAACTTCACGAAGGCTTTGAAGCGAATTATGCCATAC
ATGCGAGAGATCCGAGATTTTGGGTGTGAGACTGACGAGGACGGATTCTG
GACTGAGGTGCAGGGAAGGGCGTACGAAAATGTTGATGTGCAGCAAGTCA
TGACATATCTTGAGACAATTGCCTTCCAGTATTCCTTGTGCATTTAA
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