Ggra10795.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10795.t1
Unique NameGgra10795.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000225_piloncontigtig00000225_pilon:118703..119341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006678472.1
PFAMsEamA
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016020,GO:0016021,GO:0031224,GO:0044424,GO:0044425,GO:0044464
Evalue1.04e-09
EggNOG OGsCOG0697@1|root,KOG4510@2759|Eukaryota,395GA@33154|Opisthokonta,3NUM2@4751|Fungi
DescriptionDUF6-domain-containing protein
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10795Ggra10795Gracilaria gracilis GNS1m malegenetig00000225_pilon 118703..152257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10795.t1Ggra10795.t1Gracilaria gracilis GNS1m malepolypeptidetig00000225_pilon 118703..119341 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10795.t1.start1Ggra10795.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000225_pilon 118703..118705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10795.t1.CDS1Ggra10795.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000225_pilon 118703..119262 +
Ggra10795.t1.CDS2Ggra10795.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000225_pilon 119329..119341 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10795.t1.exon1Ggra10795.t1.exon1Gracilaria gracilis GNS1m maleexontig00000225_pilon 118703..119262 +
Ggra10795.t1.exon2Ggra10795.t1.exon2Gracilaria gracilis GNS1m maleexontig00000225_pilon 119329..119341 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10795.t1.intron1Ggra10795.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000225_pilon 119263..119328 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10795.t1.stop1Ggra10795.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000225_pilon 119339..119341 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10795.t1 ID=Ggra10795.t1|Name=Ggra10795.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=191bp
MTIPLYTTPHKGAEAQPLLPRAAAHAPSHAPSHAPSHALRHEMVGLFLMA
FSTVGYSCMTVLIRLAERRYHFHPSSFMLLRGVLHTVASGVLAFAVFNAS
LTSLSWRLRRLLLFRGAIGACGMLCLYTALSHIPAGNVMSIFAFSPVITM
TASHFVLRERATVVDALSAVIGLLGINGMQALIVHLHAMV*
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spliced messenger RNA

>Ggra10795.t1 ID=Ggra10795.t1|Name=Ggra10795.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000225_pilon:118703..119341+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCATTCCGCTCTACACCACGCCGCACAAGGGCGCCGAGGCGCAGCC
GCTGCTGCCGCGCGCCGCCGCGCACGCGCCGTCGCACGCGCCGTCGCACG
CGCCGTCGCACGCGCTTCGCCACGAGATGGTCGGCCTCTTTCTCATGGCC
TTCTCCACCGTGGGCTACTCGTGCATGACCGTGCTCATCCGTCTGGCGGA
GCGCCGCTACCACTTCCACCCGTCGTCGTTTATGCTGCTTCGCGGCGTGC
TGCACACCGTCGCGTCGGGCGTGCTGGCGTTTGCCGTGTTCAACGCCTCT
CTCACCTCCTTGTCGTGGCGCCTTCGTCGCCTGCTCTTGTTTCGCGGCGC
AATTGGCGCCTGCGGCATGCTCTGTCTGTACACCGCTCTCAGCCACATTC
CGGCGGGAAACGTCATGTCCATCTTCGCCTTCTCGCCCGTAATTACCATG
ACCGCGTCGCACTTTGTGCTGCGCGAGCGCGCCACCGTCGTCGATGCGCT
CAGCGCCGTCATCGGCCTGTTGGGCATTaatggaatgcaagcattgattg
tgcatttgcatgcaatggtctag
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protein sequence of Ggra10795.t1

>Ggra10795.t1 ID=Ggra10795.t1|Name=Ggra10795.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=191bp
MTIPLYTTPHKGAEAQPLLPRAAAHAPSHAPSHAPSHALRHEMVGLFLMA
FSTVGYSCMTVLIRLAERRYHFHPSSFMLLRGVLHTVASGVLAFAVFNAS
LTSLSWRLRRLLLFRGAIGACGMLCLYTALSHIPAGNVMSIFAFSPVITM
TASHFVLRERATVVDALSAVIGLLGINGMQALIVHLHAMV*
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mRNA from alignment at tig00000225_pilon:118703..119341+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10795.t1 ID=Ggra10795.t1|Name=Ggra10795.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000225_pilon:118703..119341+ (Gracilaria gracilis GNS1m male)
ATGACCATTCCGCTCTACACCACGCCGCACAAGGGCGCCGAGGCGCAGCC
GCTGCTGCCGCGCGCCGCCGCGCACGCGCCGTCGCACGCGCCGTCGCACG
CGCCGTCGCACGCGCTTCGCCACGAGATGGTCGGCCTCTTTCTCATGGCC
TTCTCCACCGTGGGCTACTCGTGCATGACCGTGCTCATCCGTCTGGCGGA
GCGCCGCTACCACTTCCACCCGTCGTCGTTTATGCTGCTTCGCGGCGTGC
TGCACACCGTCGCGTCGGGCGTGCTGGCGTTTGCCGTGTTCAACGCCTCT
CTCACCTCCTTGTCGTGGCGCCTTCGTCGCCTGCTCTTGTTTCGCGGCGC
AATTGGCGCCTGCGGCATGCTCTGTCTGTACACCGCTCTCAGCCACATTC
CGGCGGGAAACGTCATGTCCATCTTCGCCTTCTCGCCCGTAATTACCATG
ACCGCGTCGCACTTTGTGCTGCGCGAGCGCGCCACCGTCGTCGATGCGCT
CAGCGCCGTCATCGGCCTGTTGGGCATTaatggaatgcaagcattgattg
tgcatttgcagtgcatttgcatttgcaatgcaaagcgaaatactttcatt
aatgtttgcacgatgcataagtctagtgcaatggtctag
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Coding sequence (CDS) from alignment at tig00000225_pilon:118703..119341+

>Ggra10795.t1 ID=Ggra10795.t1|Name=Ggra10795.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00000225_pilon:118703..119341+ (Gracilaria gracilis GNS1m male)
ATGACCATTCCGCTCTACACCACGCCGCACAAGGGCGCCGAGGCGCAGCC
GCTGCTGCCGCGCGCCGCCGCGCACGCGCCGTCGCACGCGCCGTCGCACG
CGCCGTCGCACGCGCTTCGCCACGAGATGGTCGGCCTCTTTCTCATGGCC
TTCTCCACCGTGGGCTACTCGTGCATGACCGTGCTCATCCGTCTGGCGGA
GCGCCGCTACCACTTCCACCCGTCGTCGTTTATGCTGCTTCGCGGCGTGC
TGCACACCGTCGCGTCGGGCGTGCTGGCGTTTGCCGTGTTCAACGCCTCT
CTCACCTCCTTGTCGTGGCGCCTTCGTCGCCTGCTCTTGTTTCGCGGCGC
AATTGGCGCCTGCGGCATGCTCTGTCTGTACACCGCTCTCAGCCACATTC
CGGCGGGAAACGTCATGTCCATCTTCGCCTTCTCGCCCGTAATTACCATG
ACCGCGTCGCACTTTGTGCTGCGCGAGCGCGCCACCGTCGTCGATGCGCT
CAGCGCCGTCATCGGCCTGTTGGGCATTaatggaatgcaagcattgattg
tgcatttgcatgcaatggtctag
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