Ggra10791.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10791.t1
Unique NameGgra10791.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000225_piloncontigtig00000225_pilon:53561..54399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10791Ggra10791Gracilaria gracilis GNS1m malegenetig00000225_pilon 53561..54399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10791.t1Ggra10791.t1Gracilaria gracilis GNS1m malepolypeptidetig00000225_pilon 53561..54399 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10791.t1.stop1Ggra10791.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000225_pilon 53561..53563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10791.t1.CDS1Ggra10791.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000225_pilon 53561..54080 -
Ggra10791.t1.CDS2Ggra10791.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000225_pilon 54146..54399 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10791.t1.exon1Ggra10791.t1.exon1Gracilaria gracilis GNS1m maleexontig00000225_pilon 53561..54080 -
Ggra10791.t1.exon2Ggra10791.t1.exon2Gracilaria gracilis GNS1m maleexontig00000225_pilon 54146..54399 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10791.t1.intron1Ggra10791.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000225_pilon 54081..54145 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10791.t1.start1Ggra10791.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000225_pilon 54397..54399 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10791.t1 ID=Ggra10791.t1|Name=Ggra10791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MIFNLALMTAVRKSELNELRLQDATKVVEGTETVYRIVGRIGSSDGASKT
QSGGLKWINSKPKEGFVWNRKQLHGIINVYAEIEEGSKPSSFFKPQNISS
STLVRYILDAFADNKIIGVGVRRSMALHGLRSTVIAELFGAGMGDASVAL
RSGHRDHRSFLSYTNLRGSLGKRQQEGILGGFSEPSSKGKEIEDNDCEKK
TFIALAVAEVGRVYKENEAPKDNSRNRSGRSIAAENKAGVVFREAEVLVQ
SFLNNRG*
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spliced messenger RNA

>Ggra10791.t1 ID=Ggra10791.t1|Name=Ggra10791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000225_pilon:53561..54399- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTTCAACCTAGCTCTTATGACGGCTGTTCGAAAGAGCGAGTTGAA
CGAGCTTCGCCTACAGGATGCTACAAAAGTTGTGGAGGGTACCGAGACTG
TTTACCGCATCGTCGGAAGGATTGGAAGCTCAGACGGGGCATCTAAAACC
CAATCTGGGGGCCTGAAGTGGATAAACTCGAAGCCTAAGGAGGGTTTCGT
TTGGAACCGCAAACAGCTGCACGGAATCATCAATGTCTATGCTGAAATTG
AGGAAGGCAGCAAACCTTCGTCTTTCTTCAAGCCTCAAAACATCAGTTCT
AGCACGCTTGTACGCTACATTTTAGATGCTTTTGCTGACAATAAGATCAT
CGGAGTTGGTGTTCGACGTTCGATGGCGTTGCATGGACTACGTTCGACTG
TGATTGCGGAACTCTTTGGAGCCGGTATGGGGGATGCAAGCGTTGCACTA
CGTTCTGGTCATCGTGACCATCGTTCGTTTTTGTCATATACCAATCTACG
TGGTTCACTGGGTAAGCGTCAGCAAGAAGGGATTCTGGGTGGATTTTCAG
AGCCAAGTTCAAAGGGGAAAGAGATTGAAGACAATGATTGTGAGAAGAAG
ACATTCATTGCACTTGCAGTGGCTGAAGTTGGTCGTGTTTACAAGGAAAA
TGAAGCTCCCAAAGACAACAGCAGAAATAGGTCTGGAAGAAGTATTGCAG
CCGAGAACAAAGCTGGCGTTGTGTTTCGCGAGGCGGAGGTCTTGGTCCAG
TCATTTCTGAACAACCGAGGTTAG
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protein sequence of Ggra10791.t1

>Ggra10791.t1 ID=Ggra10791.t1|Name=Ggra10791.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MIFNLALMTAVRKSELNELRLQDATKVVEGTETVYRIVGRIGSSDGASKT
QSGGLKWINSKPKEGFVWNRKQLHGIINVYAEIEEGSKPSSFFKPQNISS
STLVRYILDAFADNKIIGVGVRRSMALHGLRSTVIAELFGAGMGDASVAL
RSGHRDHRSFLSYTNLRGSLGKRQQEGILGGFSEPSSKGKEIEDNDCEKK
TFIALAVAEVGRVYKENEAPKDNSRNRSGRSIAAENKAGVVFREAEVLVQ
SFLNNRG*
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mRNA from alignment at tig00000225_pilon:53561..54399-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10791.t1 ID=Ggra10791.t1|Name=Ggra10791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=839bp|location=Sequence derived from alignment at tig00000225_pilon:53561..54399- (Gracilaria gracilis GNS1m male)
ATGATTTTCAACCTAGCTCTTATGACGGCTGTTCGAAAGAGCGAGTTGAA
CGAGCTTCGCCTACAGGATGCTACAAAAGTTGTGGAGGGTACCGAGACTG
TTTACCGCATCGTCGGAAGGATTGGAAGCTCAGACGGGGCATCTAAAACC
CAATCTGGGGGCCTGAAGTGGATAAACTCGAAGCCTAAGGAGGGTTTCGT
TTGGAACCGCAAACAGCTGCACGGAATCATCAATGTCTATGCTGAAATTG
AGGAGTATATTACTCTCATCTCTTCCATTCGAGAACCGCAAGATAAGTTT
TTTGTGCTATTAACTGCAGAGGCAGCAAACCTTCGTCTTTCTTCAAGCCT
CAAAACATCAGTTCTAGCACGCTTGTACGCTACATTTTAGATGCTTTTGC
TGACAATAAGATCATCGGAGTTGGTGTTCGACGTTCGATGGCGTTGCATG
GACTACGTTCGACTGTGATTGCGGAACTCTTTGGAGCCGGTATGGGGGAT
GCAAGCGTTGCACTACGTTCTGGTCATCGTGACCATCGTTCGTTTTTGTC
ATATACCAATCTACGTGGTTCACTGGGTAAGCGTCAGCAAGAAGGGATTC
TGGGTGGATTTTCAGAGCCAAGTTCAAAGGGGAAAGAGATTGAAGACAAT
GATTGTGAGAAGAAGACATTCATTGCACTTGCAGTGGCTGAAGTTGGTCG
TGTTTACAAGGAAAATGAAGCTCCCAAAGACAACAGCAGAAATAGGTCTG
GAAGAAGTATTGCAGCCGAGAACAAAGCTGGCGTTGTGTTTCGCGAGGCG
GAGGTCTTGGTCCAGTCATTTCTGAACAACCGAGGTTAG
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Coding sequence (CDS) from alignment at tig00000225_pilon:53561..54399-

>Ggra10791.t1 ID=Ggra10791.t1|Name=Ggra10791.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000225_pilon:53561..54399- (Gracilaria gracilis GNS1m male)
ATGATTTTCAACCTAGCTCTTATGACGGCTGTTCGAAAGAGCGAGTTGAA
CGAGCTTCGCCTACAGGATGCTACAAAAGTTGTGGAGGGTACCGAGACTG
TTTACCGCATCGTCGGAAGGATTGGAAGCTCAGACGGGGCATCTAAAACC
CAATCTGGGGGCCTGAAGTGGATAAACTCGAAGCCTAAGGAGGGTTTCGT
TTGGAACCGCAAACAGCTGCACGGAATCATCAATGTCTATGCTGAAATTG
AGGAAGGCAGCAAACCTTCGTCTTTCTTCAAGCCTCAAAACATCAGTTCT
AGCACGCTTGTACGCTACATTTTAGATGCTTTTGCTGACAATAAGATCAT
CGGAGTTGGTGTTCGACGTTCGATGGCGTTGCATGGACTACGTTCGACTG
TGATTGCGGAACTCTTTGGAGCCGGTATGGGGGATGCAAGCGTTGCACTA
CGTTCTGGTCATCGTGACCATCGTTCGTTTTTGTCATATACCAATCTACG
TGGTTCACTGGGTAAGCGTCAGCAAGAAGGGATTCTGGGTGGATTTTCAG
AGCCAAGTTCAAAGGGGAAAGAGATTGAAGACAATGATTGTGAGAAGAAG
ACATTCATTGCACTTGCAGTGGCTGAAGTTGGTCGTGTTTACAAGGAAAA
TGAAGCTCCCAAAGACAACAGCAGAAATAGGTCTGGAAGAAGTATTGCAG
CCGAGAACAAAGCTGGCGTTGTGTTTCGCGAGGCGGAGGTCTTGGTCCAG
TCATTTCTGAACAACCGAGGTTAG
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