Ggra10788.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10788.t1
Unique NameGgra10788.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length549
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000225_piloncontigtig00000225_pilon:37976..39758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LD67
PFAMsCBM_1,LPMO_10
Max annot lvl2759|Eukaryota
Evalue1.84e-25
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10788Ggra10788Gracilaria gracilis GNS1m malegenetig00000225_pilon 37976..39758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10788.t1Ggra10788.t1Gracilaria gracilis GNS1m malepolypeptidetig00000225_pilon 37976..39758 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10788.t1.start1Ggra10788.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000225_pilon 37976..37978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10788.t1.CDS1Ggra10788.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000225_pilon 37976..38321 +
Ggra10788.t1.CDS2Ggra10788.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000225_pilon 38458..39758 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10788.t1.exon1Ggra10788.t1.exon1Gracilaria gracilis GNS1m maleexontig00000225_pilon 37976..38321 +
Ggra10788.t1.exon2Ggra10788.t1.exon2Gracilaria gracilis GNS1m maleexontig00000225_pilon 38458..39758 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10788.t1.intron1Ggra10788.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000225_pilon 38322..38457 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10788.t1.stop1Ggra10788.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000225_pilon 39756..39758 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10788.t1 ID=Ggra10788.t1|Name=Ggra10788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp
MQLSGPFGAVQVARAPRPTAVAAAAAAARIYASAPRGLALAAAAKLRRVP
PPPPRGASVEAAPASRAAPATVGLRCQPRRRVERRRRRRAVRRGATYAPP
ACALRRAAQKYLRPCHPTDHMARLASRVLGALLLLLPALLRVARAHGMMC
TPRQRGAYHTDKCKPDVDMGGMDGMVTDYCPHCLNGGGKATVTANLPPGG
WSVYEPTKNFFGTADRTGLCGDARAGEPHHMLGGRYMPYAKVPMVSQWRQ
GQTVDFEAEIDTNHNGYFEFFLCNLDACGRADMHPDCFVNGHCHKLQRVP
LARCETPTADTIHECGPIDAAYPGRWYVPCRKTVHVGVHIVGGDSGTMRY
QLPPDVRCEHCVVQWYWATANSCAPRGFKQYFVNYDFPFGTTCDSDGGAR
GTYSANMAECGGDAVPEEFWSCADVQISPDGAAPAVDVPAPAAPQPQEPV
AVAVEPEQQPQPQTPQPQPDGFMAASEQSGEHKQQEEAAAAAAAAATAAD
AAQSCVAEDQACDGSVACCDAQGVCVYLDDSLRFRCRTWWRLAPHSER*
back to top

spliced messenger RNA

>Ggra10788.t1 ID=Ggra10788.t1|Name=Ggra10788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000225_pilon:37976..39758+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACTCAGCGGCCCTTTTGGTGCCGTGCAAGTGGCGCGCGCTCCCCG
GCCCACCGCCGTCGCCGCCGCCGCCGCCGCCGCTCGCATCTACGCGAGCG
CGCCGCGCGGCTTAGCGCTGGCTGCGGCAGCAAAGTTGCGCCGCGTACCG
CCGCCGCCGCCGCGCGGCGCGAGCGTGGAGGCTGCGCCCGCCTCACGCGC
CGCGCCCGCCACCGTCGGCTTGCGCTGCCAGCCACGGCGCCGCGTGGAAC
GGCGCCGCCGCCGGCGCGCCGTCCGCCGTGGCGCGACGTACGCGCCGCCC
GCGTGCGCGCTGCGCCGCGCCGCGCAAAAGTACTTAAGGCCGTGCCATCC
GACTGACCACATGGCGCGTTTGGCCTCCCGCGTGCTCGGCGCgctgctgc
tgctgctgcccgcgctgctgcGCGTGGCGCGCGCGCACGGCATGATGTGC
ACGCCGCGCCAGCGCGGCGCGTACCACACCGACAAGTGCAAGCCGGACGT
CGACATGGGCGGCATGGACGGCATGGTCACCGACTATTGTCCGCACTGTC
TCAACGGCGGCGGCAAGGCCACCGTCACCGCCAACCTACCGCCGGGCGGG
TGGAGCGTGTACGAACCCACCAAAAACTTTTTCGGCACGGCCGATCGCAC
CGGGCTGTGCGGCGACGCAAGGGCCGGCGAGCCGCACCACATGCTGGGCG
GACGCTACATGCCGTACGCAAAGGTGCCCATGGTGTCGCAGTGGCGACAG
GGCCAGACGGTGGACTTTGAGGCCGAGATCGACACCAACCACAACGGCTA
CTTTGAGTTCTTCCTGTGCAACCTGGACGCGTGCGGCCGCGCCGACATGC
ACCCCGACTGCTTTGTCAACGGCCACTGCCACAAGCTGCAGCGCGTGCCG
CTGGCGCGCTGCGAAACCCCCACCGCCGACACCATCCACGAGTGCGGCCC
GATCGACGCGGCGTACCCGGGGCGCTGGTACGTGCCGTGCCGCAAGACGG
TGCACGTGGGCGTGCACATTGTGGGCGGCGACTCGGGCACCATGCGCTAC
CAGCTGCCGCCCGACGTGCGCTGCGAGCACTGCGTCGTGCAGTGGTACTG
GGCCACCGCCAACTCGTGCGCGCCGCGCGGCTTCAAGCAGTACTTTGTCA
ACTATGACTTCCCGTTCGGCACCACGTGCGACTCGGACGGCGGCGCGCGT
GGCACGTATAGCGCCAACATGGCCGAGTGCGGCGGCGACGCCGTGCCCGA
GGAGTTTTGGTCGTGCGCCGACGTGCAGATCTCGCCcgacggcgccgcac
ccgccgtcgacgtgccggcgccggcggcgccgcagccgcaggaacccgtg
gccgtggccgtcgagcccgagcaacaaccgcagccgcagacgccgcagcc
gcagccgGACGGCTTCATGGCGGCCAGCGAGCAGTCTGGCGAGCACAAGC
AGCAGGAAGAAgccgccgccgccgccgccgccgccgccaccgccgccgac
gccgcGCAGTCGTGCGTGGCGGAGGACCAAGCGTGCGACGGCAGCGTGGC
GTGCTGCGACGCGCAGGGCGTGTGCGTGTACTTGGACGACTCGCTGCGCT
TCCGCTGCCGCACGTGGTGGAGGCTGGCGCCGCACTCGGAGCGCTGA
back to top

protein sequence of Ggra10788.t1

>Ggra10788.t1 ID=Ggra10788.t1|Name=Ggra10788.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=549bp
MQLSGPFGAVQVARAPRPTAVAAAAAAARIYASAPRGLALAAAAKLRRVP
PPPPRGASVEAAPASRAAPATVGLRCQPRRRVERRRRRRAVRRGATYAPP
ACALRRAAQKYLRPCHPTDHMARLASRVLGALLLLLPALLRVARAHGMMC
TPRQRGAYHTDKCKPDVDMGGMDGMVTDYCPHCLNGGGKATVTANLPPGG
WSVYEPTKNFFGTADRTGLCGDARAGEPHHMLGGRYMPYAKVPMVSQWRQ
GQTVDFEAEIDTNHNGYFEFFLCNLDACGRADMHPDCFVNGHCHKLQRVP
LARCETPTADTIHECGPIDAAYPGRWYVPCRKTVHVGVHIVGGDSGTMRY
QLPPDVRCEHCVVQWYWATANSCAPRGFKQYFVNYDFPFGTTCDSDGGAR
GTYSANMAECGGDAVPEEFWSCADVQISPDGAAPAVDVPAPAAPQPQEPV
AVAVEPEQQPQPQTPQPQPDGFMAASEQSGEHKQQEEAAAAAAAAATAAD
AAQSCVAEDQACDGSVACCDAQGVCVYLDDSLRFRCRTWWRLAPHSER*
back to top

mRNA from alignment at tig00000225_pilon:37976..39758+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10788.t1 ID=Ggra10788.t1|Name=Ggra10788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1783bp|location=Sequence derived from alignment at tig00000225_pilon:37976..39758+ (Gracilaria gracilis GNS1m male)
ATGCAACTCAGCGGCCCTTTTGGTGCCGTGCAAGTGGCGCGCGCTCCCCG
GCCCACCGCCGTCGCCGCCGCCGCCGCCGCCGCTCGCATCTACGCGAGCG
CGCCGCGCGGCTTAGCGCTGGCTGCGGCAGCAAAGTTGCGCCGCGTACCG
CCGCCGCCGCCGCGCGGCGCGAGCGTGGAGGCTGCGCCCGCCTCACGCGC
CGCGCCCGCCACCGTCGGCTTGCGCTGCCAGCCACGGCGCCGCGTGGAAC
GGCGCCGCCGCCGGCGCGCCGTCCGCCGTGGCGCGACGTACGCGCCGCCC
GCGTGCGCGCTGCGCCGCGCCGCGCAAAAGTACTTAAGGCCGTGCCGTGC
TTTGCCCGtcttgcgtcgtcgtgtgccgccgccaccaccaccgccgccgc
cgacgccgccgacgccgccgacaacgcctCTTCACGAtctacgcaactca
cgcactacgtcaactcactcaactcaactcaGATCCGACTGACCACATGG
CGCGTTTGGCCTCCCGCGTGCTCGGCGCgctgctgctgctgctgcccgcg
ctgctgcGCGTGGCGCGCGCGCACGGCATGATGTGCACGCCGCGCCAGCG
CGGCGCGTACCACACCGACAAGTGCAAGCCGGACGTCGACATGGGCGGCA
TGGACGGCATGGTCACCGACTATTGTCCGCACTGTCTCAACGGCGGCGGC
AAGGCCACCGTCACCGCCAACCTACCGCCGGGCGGGTGGAGCGTGTACGA
ACCCACCAAAAACTTTTTCGGCACGGCCGATCGCACCGGGCTGTGCGGCG
ACGCAAGGGCCGGCGAGCCGCACCACATGCTGGGCGGACGCTACATGCCG
TACGCAAAGGTGCCCATGGTGTCGCAGTGGCGACAGGGCCAGACGGTGGA
CTTTGAGGCCGAGATCGACACCAACCACAACGGCTACTTTGAGTTCTTCC
TGTGCAACCTGGACGCGTGCGGCCGCGCCGACATGCACCCCGACTGCTTT
GTCAACGGCCACTGCCACAAGCTGCAGCGCGTGCCGCTGGCGCGCTGCGA
AACCCCCACCGCCGACACCATCCACGAGTGCGGCCCGATCGACGCGGCGT
ACCCGGGGCGCTGGTACGTGCCGTGCCGCAAGACGGTGCACGTGGGCGTG
CACATTGTGGGCGGCGACTCGGGCACCATGCGCTACCAGCTGCCGCCCGA
CGTGCGCTGCGAGCACTGCGTCGTGCAGTGGTACTGGGCCACCGCCAACT
CGTGCGCGCCGCGCGGCTTCAAGCAGTACTTTGTCAACTATGACTTCCCG
TTCGGCACCACGTGCGACTCGGACGGCGGCGCGCGTGGCACGTATAGCGC
CAACATGGCCGAGTGCGGCGGCGACGCCGTGCCCGAGGAGTTTTGGTCGT
GCGCCGACGTGCAGATCTCGCCcgacggcgccgcacccgccgtcgacgtg
ccggcgccggcggcgccgcagccgcaggaacccgtggccgtggccgtcga
gcccgagcaacaaccgcagccgcagacgccgcagccgcagccgGACGGCT
TCATGGCGGCCAGCGAGCAGTCTGGCGAGCACAAGCAGCAGGAAGAAgcc
gccgccgccgccgccgccgccgccaccgccgccgacgccgcGCAGTCGTG
CGTGGCGGAGGACCAAGCGTGCGACGGCAGCGTGGCGTGCTGCGACGCGC
AGGGCGTGTGCGTGTACTTGGACGACTCGCTGCGCTTCCGCTGCCGCACG
TGGTGGAGGCTGGCGCCGCACTCGGAGCGCTGA
back to top

Coding sequence (CDS) from alignment at tig00000225_pilon:37976..39758+

>Ggra10788.t1 ID=Ggra10788.t1|Name=Ggra10788.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00000225_pilon:37976..39758+ (Gracilaria gracilis GNS1m male)
ATGCAACTCAGCGGCCCTTTTGGTGCCGTGCAAGTGGCGCGCGCTCCCCG
GCCCACCGCCGTCGCCGCCGCCGCCGCCGCCGCTCGCATCTACGCGAGCG
CGCCGCGCGGCTTAGCGCTGGCTGCGGCAGCAAAGTTGCGCCGCGTACCG
CCGCCGCCGCCGCGCGGCGCGAGCGTGGAGGCTGCGCCCGCCTCACGCGC
CGCGCCCGCCACCGTCGGCTTGCGCTGCCAGCCACGGCGCCGCGTGGAAC
GGCGCCGCCGCCGGCGCGCCGTCCGCCGTGGCGCGACGTACGCGCCGCCC
GCGTGCGCGCTGCGCCGCGCCGCGCAAAAGTACTTAAGGCCGTGCCATCC
GACTGACCACATGGCGCGTTTGGCCTCCCGCGTGCTCGGCGCgctgctgc
tgctgctgcccgcgctgctgcGCGTGGCGCGCGCGCACGGCATGATGTGC
ACGCCGCGCCAGCGCGGCGCGTACCACACCGACAAGTGCAAGCCGGACGT
CGACATGGGCGGCATGGACGGCATGGTCACCGACTATTGTCCGCACTGTC
TCAACGGCGGCGGCAAGGCCACCGTCACCGCCAACCTACCGCCGGGCGGG
TGGAGCGTGTACGAACCCACCAAAAACTTTTTCGGCACGGCCGATCGCAC
CGGGCTGTGCGGCGACGCAAGGGCCGGCGAGCCGCACCACATGCTGGGCG
GACGCTACATGCCGTACGCAAAGGTGCCCATGGTGTCGCAGTGGCGACAG
GGCCAGACGGTGGACTTTGAGGCCGAGATCGACACCAACCACAACGGCTA
CTTTGAGTTCTTCCTGTGCAACCTGGACGCGTGCGGCCGCGCCGACATGC
ACCCCGACTGCTTTGTCAACGGCCACTGCCACAAGCTGCAGCGCGTGCCG
CTGGCGCGCTGCGAAACCCCCACCGCCGACACCATCCACGAGTGCGGCCC
GATCGACGCGGCGTACCCGGGGCGCTGGTACGTGCCGTGCCGCAAGACGG
TGCACGTGGGCGTGCACATTGTGGGCGGCGACTCGGGCACCATGCGCTAC
CAGCTGCCGCCCGACGTGCGCTGCGAGCACTGCGTCGTGCAGTGGTACTG
GGCCACCGCCAACTCGTGCGCGCCGCGCGGCTTCAAGCAGTACTTTGTCA
ACTATGACTTCCCGTTCGGCACCACGTGCGACTCGGACGGCGGCGCGCGT
GGCACGTATAGCGCCAACATGGCCGAGTGCGGCGGCGACGCCGTGCCCGA
GGAGTTTTGGTCGTGCGCCGACGTGCAGATCTCGCCcgacggcgccgcac
ccgccgtcgacgtgccggcgccggcggcgccgcagccgcaggaacccgtg
gccgtggccgtcgagcccgagcaacaaccgcagccgcagacgccgcagcc
gcagccgGACGGCTTCATGGCGGCCAGCGAGCAGTCTGGCGAGCACAAGC
AGCAGGAAGAAgccgccgccgccgccgccgccgccgccaccgccgccgac
gccgcGCAGTCGTGCGTGGCGGAGGACCAAGCGTGCGACGGCAGCGTGGC
GTGCTGCGACGCGCAGGGCGTGTGCGTGTACTTGGACGACTCGCTGCGCT
TCCGCTGCCGCACGTGGTGGAGGCTGGCGCCGCACTCGGAGCGCTGA
back to top