Ggra10787.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10787.t1
Unique NameGgra10787.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000225_piloncontigtig00000225_pilon:10850..11425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0TB56
PFAMsOctopine_DH
Max annot lvl2836|Bacillariophyta
Evalue1e-14
EggNOG OGs2948S@1|root,2RB5S@2759|Eukaryota,2XDE7@2836|Bacillariophyta
DescriptionNAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10787Ggra10787Gracilaria gracilis GNS1m malegenetig00000225_pilon 10850..11425 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10787.t1.start1Ggra10787.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000225_pilon 10850..10852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10787.t1.CDS1Ggra10787.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000225_pilon 10850..11425 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10787.t1.exon1Ggra10787.t1.exon1Gracilaria gracilis GNS1m maleexontig00000225_pilon 10850..11425 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10787.t1.stop1Ggra10787.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000225_pilon 11423..11425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10787.t1Ggra10787.t1Gracilaria gracilis GNS1m malepolypeptidetig00000225_pilon 10850..11425 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10787.t1 ID=Ggra10787.t1|Name=Ggra10787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=192bp
MYALFARSAEIDHVPLFYEHMDEPSARLIGQVSDEMLCIARAVERKSAQL
GLQLDLSRVRSIADSTTSAYEVADTSSLARIFQTCAGFAGIGTPLKKGRV
RGGVQMYAVDWKCRYFTEDIPALCVLRGLAELVDVRTPTIDMLIKWAQPH
MDGAYAFITEQNVLNTDRKKLMYTPQYWRIADADALVRFHA*
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spliced messenger RNA

>Ggra10787.t1 ID=Ggra10787.t1|Name=Ggra10787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000225_pilon:10850..11425+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCGCTGTTTGCGCGCAGCGCGGAGATCGACCACGTGCCGCTGTT
CTACGAGCACATGGACGAGCCGTCGGCGCGGCTGATAGGGCAGGTGTCGG
ACGAGATGCTGTGCATTGCGCGCGCAGTGGAGCGCAAGTCGGCGCAGCTC
GGGCTACAGCTGGACCTGTCGCGCGTGCGCTCCATCGCAGACTCCACCAC
CAGCGCGTACGAGGTGGCGGACACGTCGTCGCTGGCGCGCATCTTCCAGA
CGTGCGCGGGCTTTGCGGGCATTGGCACGCCGCTGAAGAAGGGGCGCGTG
CGCGGCGGCGTGCAGATGTACGCGGTGGATTGGAAGTGTCGCTACTTCAC
GGAGGACATCCCCGCGCTGTGCGTGCTGCGCGGGCTGGCGGAATTGGTTG
ACGTGCGCACGCCCACCATCGATATGCTCATCAAGTGGGCGCAGCCGCAC
ATGGACGGCGCGTACGCGTTCATCACGGAGCAGAACGTGCTCAATACCGA
CCGCAAGAAGCTCATGTACACGCCGCAGTACTGGCGTATTGCGGACGCGG
ACGCGCTGGTGCGCTTCCACGCGTGA
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protein sequence of Ggra10787.t1

>Ggra10787.t1 ID=Ggra10787.t1|Name=Ggra10787.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MYALFARSAEIDHVPLFYEHMDEPSARLIGQVSDEMLCIARAVERKSAQL
GLQLDLSRVRSIADSTTSAYEVADTSSLARIFQTCAGFAGIGTPLKKGRV
RGGVQMYAVDWKCRYFTEDIPALCVLRGLAELVDVRTPTIDMLIKWAQPH
MDGAYAFITEQNVLNTDRKKLMYTPQYWRIADADALVRFHA*
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mRNA from alignment at tig00000225_pilon:10850..11425+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10787.t1 ID=Ggra10787.t1|Name=Ggra10787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000225_pilon:10850..11425+ (Gracilaria gracilis GNS1m male)
ATGTACGCGCTGTTTGCGCGCAGCGCGGAGATCGACCACGTGCCGCTGTT
CTACGAGCACATGGACGAGCCGTCGGCGCGGCTGATAGGGCAGGTGTCGG
ACGAGATGCTGTGCATTGCGCGCGCAGTGGAGCGCAAGTCGGCGCAGCTC
GGGCTACAGCTGGACCTGTCGCGCGTGCGCTCCATCGCAGACTCCACCAC
CAGCGCGTACGAGGTGGCGGACACGTCGTCGCTGGCGCGCATCTTCCAGA
CGTGCGCGGGCTTTGCGGGCATTGGCACGCCGCTGAAGAAGGGGCGCGTG
CGCGGCGGCGTGCAGATGTACGCGGTGGATTGGAAGTGTCGCTACTTCAC
GGAGGACATCCCCGCGCTGTGCGTGCTGCGCGGGCTGGCGGAATTGGTTG
ACGTGCGCACGCCCACCATCGATATGCTCATCAAGTGGGCGCAGCCGCAC
ATGGACGGCGCGTACGCGTTCATCACGGAGCAGAACGTGCTCAATACCGA
CCGCAAGAAGCTCATGTACACGCCGCAGTACTGGCGTATTGCGGACGCGG
ACGCGCTGGTGCGCTTCCACGCGTGA
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Coding sequence (CDS) from alignment at tig00000225_pilon:10850..11425+

>Ggra10787.t1 ID=Ggra10787.t1|Name=Ggra10787.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00000225_pilon:10850..11425+ (Gracilaria gracilis GNS1m male)
ATGTACGCGCTGTTTGCGCGCAGCGCGGAGATCGACCACGTGCCGCTGTT
CTACGAGCACATGGACGAGCCGTCGGCGCGGCTGATAGGGCAGGTGTCGG
ACGAGATGCTGTGCATTGCGCGCGCAGTGGAGCGCAAGTCGGCGCAGCTC
GGGCTACAGCTGGACCTGTCGCGCGTGCGCTCCATCGCAGACTCCACCAC
CAGCGCGTACGAGGTGGCGGACACGTCGTCGCTGGCGCGCATCTTCCAGA
CGTGCGCGGGCTTTGCGGGCATTGGCACGCCGCTGAAGAAGGGGCGCGTG
CGCGGCGGCGTGCAGATGTACGCGGTGGATTGGAAGTGTCGCTACTTCAC
GGAGGACATCCCCGCGCTGTGCGTGCTGCGCGGGCTGGCGGAATTGGTTG
ACGTGCGCACGCCCACCATCGATATGCTCATCAAGTGGGCGCAGCCGCAC
ATGGACGGCGCGTACGCGTTCATCACGGAGCAGAACGTGCTCAATACCGA
CCGCAAGAAGCTCATGTACACGCCGCAGTACTGGCGTATTGCGGACGCGG
ACGCGCTGGTGCGCTTCCACGCGTGA
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