Ggra10753.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10753.t1
Unique NameGgra10753.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000200_piloncontigtig00000200_pilon:125108..126193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10753Ggra10753Gracilaria gracilis GNS1m malegenetig00000200_pilon 125108..126193 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10753.t1.start1Ggra10753.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000200_pilon 125108..125110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10753.t1.CDS1Ggra10753.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000200_pilon 125108..126193 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10753.t1.exon1Ggra10753.t1.exon1Gracilaria gracilis GNS1m maleexontig00000200_pilon 125108..126193 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10753.t1.stop1Ggra10753.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000200_pilon 126191..126193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10753.t1Ggra10753.t1Gracilaria gracilis GNS1m malepolypeptidetig00000200_pilon 125108..126193 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10753.t1 ID=Ggra10753.t1|Name=Ggra10753.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MVSDPAAINCLPDNVQPVSHDNSDVLHNVSMSPIPQHSVHLGEQSGTGNA
SSSLQSVQRAHSLTALPDEVHSSQQESTSDVHAYDETEDQSNYTATGIDI
PKIVHDSSMDDSDMPFSQELEPNAGEGSECSSDFAESSLENNDWHAELLH
LRESTCRSLQSSAAACQRLAFDDNESQLFHSFDDERYESAPWQVNEEEWQ
ECETHQNLEDRAIASRSGGLPNWIYDSPFDSIDVNIGDVDMWLGERYTTE
ANVILDNVLAELGARCSIRTRHTGTTENFDAETIISPLNLLKVFVPDSLL
QKLSDVANRNLESRRKDTTNKKEILDLVVLHILCASYNESPTVVCDPLET
GNFLQIGITSV*
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spliced messenger RNA

>Ggra10753.t1 ID=Ggra10753.t1|Name=Ggra10753.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000200_pilon:125108..126193+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATCGGATCCAGCTGCTATCAACTGTCTCCCCGACAACGTACAGCC
AGTATCACATGACAACAGTGATGTTCTCCATAACGTTTCAATGTCGCCCA
TCCCACAACACTCTGTACATTTGGGTGAACAATCCGGCACAGGTAATGCA
TCTAGCAGCCTTCAATCCGTGCAACGAGCTCATTCGTTAACTGCTCTGCC
AGATGAAGTGCACTCAAGCCAACAAGAAAGCACAAGTGACGTTCATGCAT
ATGACGAAACTGAGGATCAAAGCAATTATACAGCTACGGGTATCGACATA
CCAAAGATTGTACATGATTCATCAATGGATGACAGCGACATGCCATTTTC
GCAGGAACTGGAACCAAACGCAGGCGAAGGATCTGAATGTAGCTCTGATT
TTGCAGAATCTTCCCTTGAAAATAATGACTGGCATGCCGAGCTCTTGCAT
CTTCGCGAGAGCACATGTCGATCTTTGCAATCCAGTGCTGCAGCCTGCCA
ACGGCTAGCATTTGATGATAACGAAAGCCAACTGTTTCATAGTTTTGATG
ATGAGCGTTATGAAAGCGCACCATGGCAGGTCAATGAGGAAGAATGGCAG
GAATGCGAAACGCATCAGAATTTAGAGGACAGAGCGATTGCATCTAGATC
CGGGGGCCTGCCTAATTGGATTTATGACAGTCCATTCGATTCAATTGACG
TCAACATTGGTGATGTCGATATGTGGTTAGGAGAGAGATATACTACTGAA
GCGAACGTGATTCTTGATAATGTTCTGGCAGAATTGGGGGCAAGATGTTC
AATTCGAACTAGACACACTGGAACTACAGAGAACTTTGATGCAGAAACGA
TCATCTCACCACTCAATCTTCTAAAAGTTTTTGTTCCAGATTCATTGCTT
CAGAAGCTCTCAGATGTTGCAAACCGGAACCTAGAATCGCGTAGAAAGGA
TACGACGAACAAAAAGGAAATCCTGGACCTCGTTGTCCTGCATATTTTGT
GCGCATCTTATAATGAGTCTCCTACAGTTGTCTGTGATCCTTTGGAAACT
GGaaactttctacagataggtataacgagcgtgtag
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protein sequence of Ggra10753.t1

>Ggra10753.t1 ID=Ggra10753.t1|Name=Ggra10753.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MVSDPAAINCLPDNVQPVSHDNSDVLHNVSMSPIPQHSVHLGEQSGTGNA
SSSLQSVQRAHSLTALPDEVHSSQQESTSDVHAYDETEDQSNYTATGIDI
PKIVHDSSMDDSDMPFSQELEPNAGEGSECSSDFAESSLENNDWHAELLH
LRESTCRSLQSSAAACQRLAFDDNESQLFHSFDDERYESAPWQVNEEEWQ
ECETHQNLEDRAIASRSGGLPNWIYDSPFDSIDVNIGDVDMWLGERYTTE
ANVILDNVLAELGARCSIRTRHTGTTENFDAETIISPLNLLKVFVPDSLL
QKLSDVANRNLESRRKDTTNKKEILDLVVLHILCASYNESPTVVCDPLET
GNFLQIGITSV*
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mRNA from alignment at tig00000200_pilon:125108..126193+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10753.t1 ID=Ggra10753.t1|Name=Ggra10753.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000200_pilon:125108..126193+ (Gracilaria gracilis GNS1m male)
ATGGTATCGGATCCAGCTGCTATCAACTGTCTCCCCGACAACGTACAGCC
AGTATCACATGACAACAGTGATGTTCTCCATAACGTTTCAATGTCGCCCA
TCCCACAACACTCTGTACATTTGGGTGAACAATCCGGCACAGGTAATGCA
TCTAGCAGCCTTCAATCCGTGCAACGAGCTCATTCGTTAACTGCTCTGCC
AGATGAAGTGCACTCAAGCCAACAAGAAAGCACAAGTGACGTTCATGCAT
ATGACGAAACTGAGGATCAAAGCAATTATACAGCTACGGGTATCGACATA
CCAAAGATTGTACATGATTCATCAATGGATGACAGCGACATGCCATTTTC
GCAGGAACTGGAACCAAACGCAGGCGAAGGATCTGAATGTAGCTCTGATT
TTGCAGAATCTTCCCTTGAAAATAATGACTGGCATGCCGAGCTCTTGCAT
CTTCGCGAGAGCACATGTCGATCTTTGCAATCCAGTGCTGCAGCCTGCCA
ACGGCTAGCATTTGATGATAACGAAAGCCAACTGTTTCATAGTTTTGATG
ATGAGCGTTATGAAAGCGCACCATGGCAGGTCAATGAGGAAGAATGGCAG
GAATGCGAAACGCATCAGAATTTAGAGGACAGAGCGATTGCATCTAGATC
CGGGGGCCTGCCTAATTGGATTTATGACAGTCCATTCGATTCAATTGACG
TCAACATTGGTGATGTCGATATGTGGTTAGGAGAGAGATATACTACTGAA
GCGAACGTGATTCTTGATAATGTTCTGGCAGAATTGGGGGCAAGATGTTC
AATTCGAACTAGACACACTGGAACTACAGAGAACTTTGATGCAGAAACGA
TCATCTCACCACTCAATCTTCTAAAAGTTTTTGTTCCAGATTCATTGCTT
CAGAAGCTCTCAGATGTTGCAAACCGGAACCTAGAATCGCGTAGAAAGGA
TACGACGAACAAAAAGGAAATCCTGGACCTCGTTGTCCTGCATATTTTGT
GCGCATCTTATAATGAGTCTCCTACAGTTGTCTGTGATCCTTTGGAAACT
GGaaactttctacagataggtataacgagcgtgtag
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Coding sequence (CDS) from alignment at tig00000200_pilon:125108..126193+

>Ggra10753.t1 ID=Ggra10753.t1|Name=Ggra10753.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000200_pilon:125108..126193+ (Gracilaria gracilis GNS1m male)
ATGGTATCGGATCCAGCTGCTATCAACTGTCTCCCCGACAACGTACAGCC
AGTATCACATGACAACAGTGATGTTCTCCATAACGTTTCAATGTCGCCCA
TCCCACAACACTCTGTACATTTGGGTGAACAATCCGGCACAGGTAATGCA
TCTAGCAGCCTTCAATCCGTGCAACGAGCTCATTCGTTAACTGCTCTGCC
AGATGAAGTGCACTCAAGCCAACAAGAAAGCACAAGTGACGTTCATGCAT
ATGACGAAACTGAGGATCAAAGCAATTATACAGCTACGGGTATCGACATA
CCAAAGATTGTACATGATTCATCAATGGATGACAGCGACATGCCATTTTC
GCAGGAACTGGAACCAAACGCAGGCGAAGGATCTGAATGTAGCTCTGATT
TTGCAGAATCTTCCCTTGAAAATAATGACTGGCATGCCGAGCTCTTGCAT
CTTCGCGAGAGCACATGTCGATCTTTGCAATCCAGTGCTGCAGCCTGCCA
ACGGCTAGCATTTGATGATAACGAAAGCCAACTGTTTCATAGTTTTGATG
ATGAGCGTTATGAAAGCGCACCATGGCAGGTCAATGAGGAAGAATGGCAG
GAATGCGAAACGCATCAGAATTTAGAGGACAGAGCGATTGCATCTAGATC
CGGGGGCCTGCCTAATTGGATTTATGACAGTCCATTCGATTCAATTGACG
TCAACATTGGTGATGTCGATATGTGGTTAGGAGAGAGATATACTACTGAA
GCGAACGTGATTCTTGATAATGTTCTGGCAGAATTGGGGGCAAGATGTTC
AATTCGAACTAGACACACTGGAACTACAGAGAACTTTGATGCAGAAACGA
TCATCTCACCACTCAATCTTCTAAAAGTTTTTGTTCCAGATTCATTGCTT
CAGAAGCTCTCAGATGTTGCAAACCGGAACCTAGAATCGCGTAGAAAGGA
TACGACGAACAAAAAGGAAATCCTGGACCTCGTTGTCCTGCATATTTTGT
GCGCATCTTATAATGAGTCTCCTACAGTTGTCTGTGATCCTTTGGAAACT
GGaaactttctacagataggtataacgagcgtgtag
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