Ggra1075.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1075.t1
Unique NameGgra1075.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:114000..115031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML077CT
Preferred nameGTF2B
PFAMsTFIIB,TF_Zn_Ribbon
Max annot lvl2759|Eukaryota
KEGG koko:K03124
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
GOsGO:0000003,GO:0000428,GO:0000769,GO:0000976,GO:0000977,GO:0000979,GO:0000988,GO:0000989,GO:0000990,GO:0000991,GO:0000993,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001076,GO:0001098,GO:0001099,GO:0001112,GO:0001113,GO:0001120,GO:0001129,GO:0001132,GO:0001139,GO:0001173,GO:0001174,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006725,GO:0006807,GO:0006935,GO:0006949,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009301,GO:0009605,GO:0009653,GO:0009791,GO:0009856,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009960,GO:0009987,GO:0010035,GO:0010038,GO:0010154,GO:0010183,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010769,GO:0016043,GO:0016070,GO:0016073,GO:0016407,GO:0016591,GO:0016604,GO:0016740,GO:0016746,GO:0016747,GO:0017025,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035257,GO:0035821,GO:0036211,GO:0040008,GO:0040011,GO:0042221,GO:0042330,GO:0042795,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043388,GO:0043412,GO:0043543,GO:0043565,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044706,GO:0044798,GO:0044877,GO:0045595,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046686,GO:0046782,GO:0046872,GO:0046914,GO:0046966,GO:0048316,GO:0048518,GO:0048522,GO:0048524,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048856,GO:0048868,GO:0050434,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050896,GO:0050918,GO:0051098,GO:0051099,GO:0051101,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051427,GO:0051510,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0060284,GO:0061458,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080092,GO:0090304,GO:0090575,GO:0097159,GO:0097550,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904796,GO:1904798,GO:1990114,GO:1990234,GO:1990837,GO:1990841,GO:2000112,GO:2000142,GO:2000144,GO:2000241,GO:2000677,GO:2000679,GO:2001141
Evalue1.19e-61
EggNOG OGsCOG1405@1|root,KOG1597@2759|Eukaryota
DescriptionTBP-class protein binding
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1075Ggra1075Gracilaria gracilis GNS1m malegenetig00000868_pilon 114000..115031 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1075.t1.stop1Ggra1075.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 114000..114002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1075.t1.CDS1Ggra1075.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 114000..115031 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1075.t1.exon1Ggra1075.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 114000..115031 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1075.t1.start1Ggra1075.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 115029..115031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1075.t1Ggra1075.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 114000..115031 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1075.t1 ID=Ggra1075.t1|Name=Ggra1075.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=344bp
MASFNGMPSLAPPMEREMPEECPECGSDDIVENWREGTADCRGCGLIIIE
RLLDLGTEWRTFTSEEGDDPNRAGPANNPLLEFEHGTSIGTGAKGGGALS
VSLNRAQNRNATSAADKVMMEVIQRIGRHRDRLNLAKSVSDRALELFKRY
QDHLTTKIVSTPGQPDKRVRTRTLREEEVNEIVASSLFIACRNQKVARSY
KEICALTGVPKKNVGATVKKMERQLTDAKTTYVRGTDDFVTRFGNFLDLP
RDVINAADAVAGEMQNHGVLHGKTYTTLAAASIYIVTLLCKAEHKRSAKE
IADVTGVAEVTIKSTYRQFYPHIEGVIPDDFECAVSVSDLPQP*
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spliced messenger RNA

>Ggra1075.t1 ID=Ggra1075.t1|Name=Ggra1075.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000868_pilon:114000..115031- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGTTTAACGGGATGCCGAGCTTGGCTCCGCCTATGGAGCGCGA
AATGCCAGAAGAATGCCCCGAATGCGGCTCCGATGACATTGTGGAGAACT
GGAGAGAGGGCACGGCAGATTGCAGAGGGTGCGGTCTTATTATCATTGAG
AGACTGCTTGACCTTGGCACCGAATGGCGTACCTTCACTTCCGAAGAAGG
AGACGACCCGAACCGTGCCGGTCCGGCAAACAACCCCTTGCTCGAGTTCG
AACATGGGACGAGCATCGGAACGGGTGCAAAAGGAGGTGGTGCGTTGAGC
GTGTCGCTCAACCGCGCGCAAAACAGAAACGCCACATCCGCTGCGGATAA
GGTGATGATGGAAGTCATTCAACGCATCGGTAGACACCGTGACCGCTTGA
ATCTGGCCAAATCGGTGAGCGACCGGGCCCTGGAGTTGTTCAAACGATAC
CAAGACCATTTGACCACGAAGATTGTGTCCACGCCCGGCCAGCCCGACAA
GCGTGTGAGGACTAGAACGCTGCGCGAGGAGGAAGTAAACGAGATTGTGG
CGTCTAGTCTGTTCATCGCATGCAGGAATCAAAAGGTGGCGCGCTCGTAC
AAGGAAATCTGTGCTTTGACTGGCGTGCCTAAGAAGAACGTGGGCGCTAC
GGTGAAGAAGATGGAGCGACAACTGACGGACGCTAAGACGACTTATGTTC
GCGGCACGGACGACTTTGTGACACGCTTTGGCAACTTTCTGGACTTACCA
CGCGACGTGATCAACGCGGCCGATGCGGTGGCAGGGGAGATGCAGAACCA
TGGGGTGCTGCATGGCAAAACGTATACGACACTGGCGGCTGCGAGTATCT
ACATTGTTACGTTACTGTGTAAGGCGGAGCACAAGAGGAGCGCAAAGGAG
ATTGCGGACGTGACGGGGGTGGCGGAGGTGACTATCAAGTCAACATATCG
ACAGTTCTACCCGCACATCGAGGGAGTGATACCCGACGACTTTGAGTGCG
CAGTGAGCGTGTCAGACCTGCCGCAGCCGTAG
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protein sequence of Ggra1075.t1

>Ggra1075.t1 ID=Ggra1075.t1|Name=Ggra1075.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MASFNGMPSLAPPMEREMPEECPECGSDDIVENWREGTADCRGCGLIIIE
RLLDLGTEWRTFTSEEGDDPNRAGPANNPLLEFEHGTSIGTGAKGGGALS
VSLNRAQNRNATSAADKVMMEVIQRIGRHRDRLNLAKSVSDRALELFKRY
QDHLTTKIVSTPGQPDKRVRTRTLREEEVNEIVASSLFIACRNQKVARSY
KEICALTGVPKKNVGATVKKMERQLTDAKTTYVRGTDDFVTRFGNFLDLP
RDVINAADAVAGEMQNHGVLHGKTYTTLAAASIYIVTLLCKAEHKRSAKE
IADVTGVAEVTIKSTYRQFYPHIEGVIPDDFECAVSVSDLPQP*
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mRNA from alignment at tig00000868_pilon:114000..115031-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1075.t1 ID=Ggra1075.t1|Name=Ggra1075.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000868_pilon:114000..115031- (Gracilaria gracilis GNS1m male)
ATGGCGTCGTTTAACGGGATGCCGAGCTTGGCTCCGCCTATGGAGCGCGA
AATGCCAGAAGAATGCCCCGAATGCGGCTCCGATGACATTGTGGAGAACT
GGAGAGAGGGCACGGCAGATTGCAGAGGGTGCGGTCTTATTATCATTGAG
AGACTGCTTGACCTTGGCACCGAATGGCGTACCTTCACTTCCGAAGAAGG
AGACGACCCGAACCGTGCCGGTCCGGCAAACAACCCCTTGCTCGAGTTCG
AACATGGGACGAGCATCGGAACGGGTGCAAAAGGAGGTGGTGCGTTGAGC
GTGTCGCTCAACCGCGCGCAAAACAGAAACGCCACATCCGCTGCGGATAA
GGTGATGATGGAAGTCATTCAACGCATCGGTAGACACCGTGACCGCTTGA
ATCTGGCCAAATCGGTGAGCGACCGGGCCCTGGAGTTGTTCAAACGATAC
CAAGACCATTTGACCACGAAGATTGTGTCCACGCCCGGCCAGCCCGACAA
GCGTGTGAGGACTAGAACGCTGCGCGAGGAGGAAGTAAACGAGATTGTGG
CGTCTAGTCTGTTCATCGCATGCAGGAATCAAAAGGTGGCGCGCTCGTAC
AAGGAAATCTGTGCTTTGACTGGCGTGCCTAAGAAGAACGTGGGCGCTAC
GGTGAAGAAGATGGAGCGACAACTGACGGACGCTAAGACGACTTATGTTC
GCGGCACGGACGACTTTGTGACACGCTTTGGCAACTTTCTGGACTTACCA
CGCGACGTGATCAACGCGGCCGATGCGGTGGCAGGGGAGATGCAGAACCA
TGGGGTGCTGCATGGCAAAACGTATACGACACTGGCGGCTGCGAGTATCT
ACATTGTTACGTTACTGTGTAAGGCGGAGCACAAGAGGAGCGCAAAGGAG
ATTGCGGACGTGACGGGGGTGGCGGAGGTGACTATCAAGTCAACATATCG
ACAGTTCTACCCGCACATCGAGGGAGTGATACCCGACGACTTTGAGTGCG
CAGTGAGCGTGTCAGACCTGCCGCAGCCGTAG
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Coding sequence (CDS) from alignment at tig00000868_pilon:114000..115031-

>Ggra1075.t1 ID=Ggra1075.t1|Name=Ggra1075.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000868_pilon:114000..115031- (Gracilaria gracilis GNS1m male)
ATGGCGTCGTTTAACGGGATGCCGAGCTTGGCTCCGCCTATGGAGCGCGA
AATGCCAGAAGAATGCCCCGAATGCGGCTCCGATGACATTGTGGAGAACT
GGAGAGAGGGCACGGCAGATTGCAGAGGGTGCGGTCTTATTATCATTGAG
AGACTGCTTGACCTTGGCACCGAATGGCGTACCTTCACTTCCGAAGAAGG
AGACGACCCGAACCGTGCCGGTCCGGCAAACAACCCCTTGCTCGAGTTCG
AACATGGGACGAGCATCGGAACGGGTGCAAAAGGAGGTGGTGCGTTGAGC
GTGTCGCTCAACCGCGCGCAAAACAGAAACGCCACATCCGCTGCGGATAA
GGTGATGATGGAAGTCATTCAACGCATCGGTAGACACCGTGACCGCTTGA
ATCTGGCCAAATCGGTGAGCGACCGGGCCCTGGAGTTGTTCAAACGATAC
CAAGACCATTTGACCACGAAGATTGTGTCCACGCCCGGCCAGCCCGACAA
GCGTGTGAGGACTAGAACGCTGCGCGAGGAGGAAGTAAACGAGATTGTGG
CGTCTAGTCTGTTCATCGCATGCAGGAATCAAAAGGTGGCGCGCTCGTAC
AAGGAAATCTGTGCTTTGACTGGCGTGCCTAAGAAGAACGTGGGCGCTAC
GGTGAAGAAGATGGAGCGACAACTGACGGACGCTAAGACGACTTATGTTC
GCGGCACGGACGACTTTGTGACACGCTTTGGCAACTTTCTGGACTTACCA
CGCGACGTGATCAACGCGGCCGATGCGGTGGCAGGGGAGATGCAGAACCA
TGGGGTGCTGCATGGCAAAACGTATACGACACTGGCGGCTGCGAGTATCT
ACATTGTTACGTTACTGTGTAAGGCGGAGCACAAGAGGAGCGCAAAGGAG
ATTGCGGACGTGACGGGGGTGGCGGAGGTGACTATCAAGTCAACATATCG
ACAGTTCTACCCGCACATCGAGGGAGTGATACCCGACGACTTTGAGTGCG
CAGTGAGCGTGTCAGACCTGCCGCAGCCGTAG
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