Ggra10721.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10721.t1
Unique NameGgra10721.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:766449..767522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog37682.EMT31096
PFAMsGlyco_hydro_19,peroxidase
Max annot lvl35493|Streptophyta
KEGG rclassRC00092
KEGG koko:K00434
KEGG ReactionR00644
KEGG Pathwayko00053,ko00480,map00053,map00480
Evalue3.32e-38
EggNOG OGsCOG3979@1|root,KOG4742@2759|Eukaryota,389JF@33090|Viridiplantae,3GYQP@35493|Streptophyta,3M3RM@4447|Liliopsida,3IV08@38820|Poales
EC1.11.1.11
DescriptionChitinase class I
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10721Ggra10721Gracilaria gracilis GNS1m malegenetig00000888_pilon 766449..767522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10721.t1Ggra10721.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 766449..767522 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10721.t1.stop1Ggra10721.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 766449..766451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10721.t1.CDS1Ggra10721.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 766449..766686 -
Ggra10721.t1.CDS2Ggra10721.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000888_pilon 766783..767522 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10721.t1.exon1Ggra10721.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 766449..766686 -
Ggra10721.t1.exon2Ggra10721.t1.exon2Gracilaria gracilis GNS1m maleexontig00000888_pilon 766783..767522 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10721.t1.intron1Ggra10721.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000888_pilon 766687..766782 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10721.t1.start1Ggra10721.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 767520..767522 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10721.t1 ID=Ggra10721.t1|Name=Ggra10721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=326bp
MFAFILPASFPAHKPKPVFKTCANPLAPASNHPRMSAAPISRRSFTLAAL
STISISFLPEATRAVTTLPQTSSPPATREAQAQALRKAVRAAIKSDPTMA
ATLLRLAFHDSFTFDLVSGKGGANGSIRLETSRGENFGLQRAVDVLRPMQ
ASIGLGWGDVVAVAGAEAVEATGGPHIEVRLGRDQAETEDPRGALPAPSE
TVDQLRARFVPRGFNDVDIVALSGAHTLGRVGGGGPFVAEPNRFKNDYFK
NLLWYQDRRERNLPTTTGPPDRPNFQLPSDMHLLDDAKTLALVRKFGADE
GAFFAQFVESYNKMMSVGTPFASRR*
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spliced messenger RNA

>Ggra10721.t1 ID=Ggra10721.t1|Name=Ggra10721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000888_pilon:766449..767522- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCTTCATTCTACCAGCCTCTTTTCCCGCCCACAAACCCAAACC
CGTTTTCAAGACATGTGCCAATCCTCTCGCACCAGCTTCGAACCATCCCC
GAATGTCCGCAGCCCCAATCTCACGCCGCTCCTTCACGCTGGCCGCTCTG
TCCACCATTTCCATCTCCTTCCTCCCGGAAGCAACCCGTGCCGTGACCAC
TCTTCCGCAAACATCGTCTCCGCCCGCAACGCGCGAAGCCCAAGCACAAG
CCCTCCGCAAAGCTGTGCGCGCAGCAATCAAGTCTGATCCAACCATGGCA
GCCACATTACTGCGTCTTGCTTTCCACGATTCCTTCACTTTCGACCTCGT
CTCGGGCAAAGGCGGTGCCAACGGTTCCATTCGTCTCGAAACCAGTCGCG
GTGAGAACTTCGGACTTCAACGTGCTGTCGATGTACTCCGCCCTATGCAG
GCCTCCATCGGCTTAGGTTGGGGAGACGTCGTCGCTGTAGCCGGTGCGGA
GGCTGTGGAGGCCACCGGTGGTCCACATATAGAGGTTCGTCTTGGAAGAG
ACCAGGCCGAAACTGAGGATCCCCGCGGCGCGCTTCCTGCGCCCTCCGAG
ACTGTGGACCAACTTCGTGCCAGGTTTGTACCGAGAGGATTCAATGATGT
GGATATTGTTGCGCTATCCGGCGCGCACACCCTCGGTAGAGTTGGCGGCG
GAGGACCGTTTGTAGCAGAACCGAACCGATTCAAGAATGACTACTTTAAA
AACTTGCTCTGGTACCAGGACAGACGTGAGCGAAATCTGCCCACCACGAC
GGGGCCTCCAGACCGACCGAACTTCCAGCTCCCTAGCGATATGCATTTGC
TGGACGATGCCAAAACGCTCGCTCTTGTACGAAAATTTGGAGCTGATGAG
GGTGCTTTCTTCGCGCAATTTGTGGAGTCTTACAACAAGATGATGAGTGT
GGGTACGCCGTTTGCATCCCGCCGATAG
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protein sequence of Ggra10721.t1

>Ggra10721.t1 ID=Ggra10721.t1|Name=Ggra10721.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MFAFILPASFPAHKPKPVFKTCANPLAPASNHPRMSAAPISRRSFTLAAL
STISISFLPEATRAVTTLPQTSSPPATREAQAQALRKAVRAAIKSDPTMA
ATLLRLAFHDSFTFDLVSGKGGANGSIRLETSRGENFGLQRAVDVLRPMQ
ASIGLGWGDVVAVAGAEAVEATGGPHIEVRLGRDQAETEDPRGALPAPSE
TVDQLRARFVPRGFNDVDIVALSGAHTLGRVGGGGPFVAEPNRFKNDYFK
NLLWYQDRRERNLPTTTGPPDRPNFQLPSDMHLLDDAKTLALVRKFGADE
GAFFAQFVESYNKMMSVGTPFASRR*
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mRNA from alignment at tig00000888_pilon:766449..767522-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10721.t1 ID=Ggra10721.t1|Name=Ggra10721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000888_pilon:766449..767522- (Gracilaria gracilis GNS1m male)
ATGTTCGCCTTCATTCTACCAGCCTCTTTTCCCGCCCACAAACCCAAACC
CGTTTTCAAGACATGTGCCAATCCTCTCGCACCAGCTTCGAACCATCCCC
GAATGTCCGCAGCCCCAATCTCACGCCGCTCCTTCACGCTGGCCGCTCTG
TCCACCATTTCCATCTCCTTCCTCCCGGAAGCAACCCGTGCCGTGACCAC
TCTTCCGCAAACATCGTCTCCGCCCGCAACGCGCGAAGCCCAAGCACAAG
CCCTCCGCAAAGCTGTGCGCGCAGCAATCAAGTCTGATCCAACCATGGCA
GCCACATTACTGCGTCTTGCTTTCCACGATTCCTTCACTTTCGACCTCGT
CTCGGGCAAAGGCGGTGCCAACGGTTCCATTCGTCTCGAAACCAGTCGCG
GTGAGAACTTCGGACTTCAACGTGCTGTCGATGTACTCCGCCCTATGCAG
GCCTCCATCGGCTTAGGTTGGGGAGACGTCGTCGCTGTAGCCGGTGCGGA
GGCTGTGGAGGCCACCGGTGGTCCACATATAGAGGTTCGTCTTGGAAGAG
ACCAGGCCGAAACTGAGGATCCCCGCGGCGCGCTTCCTGCGCCCTCCGAG
ACTGTGGACCAACTTCGTGCCAGGTTTGTACCGAGAGGATTCAATGATGT
GGATATTGTTGCGCTATCCGGCGCGCACACCCTCGGTAGAGTTGGCGGCG
GAGGACCGTTTGTAGCAGAACCGAACCGATTCAAGAATGAGTACGTTTTC
ACCGCGCCTCGCCAGAGTTTATTCCTATTGTAGCTGCTGACCACGACAAC
TTTTTCTTCTTTTTGAATGCGGGTGCTTTCGCACAGCTACTTTAAAAACT
TGCTCTGGTACCAGGACAGACGTGAGCGAAATCTGCCCACCACGACGGGG
CCTCCAGACCGACCGAACTTCCAGCTCCCTAGCGATATGCATTTGCTGGA
CGATGCCAAAACGCTCGCTCTTGTACGAAAATTTGGAGCTGATGAGGGTG
CTTTCTTCGCGCAATTTGTGGAGTCTTACAACAAGATGATGAGTGTGGGT
ACGCCGTTTGCATCCCGCCGATAG
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Coding sequence (CDS) from alignment at tig00000888_pilon:766449..767522-

>Ggra10721.t1 ID=Ggra10721.t1|Name=Ggra10721.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000888_pilon:766449..767522- (Gracilaria gracilis GNS1m male)
ATGTTCGCCTTCATTCTACCAGCCTCTTTTCCCGCCCACAAACCCAAACC
CGTTTTCAAGACATGTGCCAATCCTCTCGCACCAGCTTCGAACCATCCCC
GAATGTCCGCAGCCCCAATCTCACGCCGCTCCTTCACGCTGGCCGCTCTG
TCCACCATTTCCATCTCCTTCCTCCCGGAAGCAACCCGTGCCGTGACCAC
TCTTCCGCAAACATCGTCTCCGCCCGCAACGCGCGAAGCCCAAGCACAAG
CCCTCCGCAAAGCTGTGCGCGCAGCAATCAAGTCTGATCCAACCATGGCA
GCCACATTACTGCGTCTTGCTTTCCACGATTCCTTCACTTTCGACCTCGT
CTCGGGCAAAGGCGGTGCCAACGGTTCCATTCGTCTCGAAACCAGTCGCG
GTGAGAACTTCGGACTTCAACGTGCTGTCGATGTACTCCGCCCTATGCAG
GCCTCCATCGGCTTAGGTTGGGGAGACGTCGTCGCTGTAGCCGGTGCGGA
GGCTGTGGAGGCCACCGGTGGTCCACATATAGAGGTTCGTCTTGGAAGAG
ACCAGGCCGAAACTGAGGATCCCCGCGGCGCGCTTCCTGCGCCCTCCGAG
ACTGTGGACCAACTTCGTGCCAGGTTTGTACCGAGAGGATTCAATGATGT
GGATATTGTTGCGCTATCCGGCGCGCACACCCTCGGTAGAGTTGGCGGCG
GAGGACCGTTTGTAGCAGAACCGAACCGATTCAAGAATGACTACTTTAAA
AACTTGCTCTGGTACCAGGACAGACGTGAGCGAAATCTGCCCACCACGAC
GGGGCCTCCAGACCGACCGAACTTCCAGCTCCCTAGCGATATGCATTTGC
TGGACGATGCCAAAACGCTCGCTCTTGTACGAAAATTTGGAGCTGATGAG
GGTGCTTTCTTCGCGCAATTTGTGGAGTCTTACAACAAGATGATGAGTGT
GGGTACGCCGTTTGCATCCCGCCGATAG
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