Ggra10709.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10709.t1
Unique NameGgra10709.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length196
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:611690..612277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10709Ggra10709Gracilaria gracilis GNS1m malegenetig00000888_pilon 611690..612277 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10709.t1.start1Ggra10709.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 611690..611692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10709.t1.CDS1Ggra10709.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 611690..612277 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10709.t1.exon1Ggra10709.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 611690..612277 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10709.t1.stop1Ggra10709.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 612275..612277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10709.t1Ggra10709.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 611690..612277 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10709.t1 ID=Ggra10709.t1|Name=Ggra10709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=196bp
MNVESGDLEDGHFMLFDTEKYSWQYSCHSVREDLGCQFIELGICVCRDQS
SYPRSTTRFVDLGLTHFIYPLDIYMAAKFSFVRKYERPTGIDLLPQHDLC
NIPATFGEYRDDDEDVKVTTFDGIPNVAMPGMYFFDIEAGSNVLCFAMVT
IAEKKVLELIGSLLRLLPQSAVCLPLHQPIGHSTIYYREVHWPIS*
back to top

spliced messenger RNA

>Ggra10709.t1 ID=Ggra10709.t1|Name=Ggra10709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000888_pilon:611690..612277+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTTGAGAGCGGAGATTTGGAAGATGGACATTTCATGCTGTTTGA
CACAGAGAAGTACTCCTGGCAATACAGCTGTCATAGCGTTCGAGAGGACC
TTGGTTGTCAGTTCATCGAACTTGGAATCTGTGTTTGTCGCGACCAAAGT
TCCTATCCTAGAAGTACTACGAGATTTGTTGATCTTGGACTCACACATTT
CATCTATCCTTTGGATATCTATATGGCCGCCAAATTCTCCTTTGTGAGGA
AGTATGAACGTCCGACCGGTATTGATTTGCTTCCACAACATGATTTGTGC
AACATACCGGCTACATTTGGTGAATATCGTGATGACGATGAGGACGTGAA
AGTAACTACATTCGATGGGATACCGAACGTAGCGATGCCCGGCATGTATT
TCTTCGACATTGAAGCTGGGAGTAATGTTCTATGTTTCGCGATGGTGACT
ATTGCTGAAAAGAAAGTCCTGGAGCTCATTGGGTCCCTCCTCCGCCTTCT
CCCACAATCCGCCGTTTGCCTCCCGCTACATCAACCTATCGGGCACAGTA
CCATATACTACCGAGAGGTACACTGGCCAATTTCATGA
back to top

protein sequence of Ggra10709.t1

>Ggra10709.t1 ID=Ggra10709.t1|Name=Ggra10709.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=196bp
MNVESGDLEDGHFMLFDTEKYSWQYSCHSVREDLGCQFIELGICVCRDQS
SYPRSTTRFVDLGLTHFIYPLDIYMAAKFSFVRKYERPTGIDLLPQHDLC
NIPATFGEYRDDDEDVKVTTFDGIPNVAMPGMYFFDIEAGSNVLCFAMVT
IAEKKVLELIGSLLRLLPQSAVCLPLHQPIGHSTIYYREVHWPIS*
back to top

mRNA from alignment at tig00000888_pilon:611690..612277+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10709.t1 ID=Ggra10709.t1|Name=Ggra10709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000888_pilon:611690..612277+ (Gracilaria gracilis GNS1m male)
ATGAACGTTGAGAGCGGAGATTTGGAAGATGGACATTTCATGCTGTTTGA
CACAGAGAAGTACTCCTGGCAATACAGCTGTCATAGCGTTCGAGAGGACC
TTGGTTGTCAGTTCATCGAACTTGGAATCTGTGTTTGTCGCGACCAAAGT
TCCTATCCTAGAAGTACTACGAGATTTGTTGATCTTGGACTCACACATTT
CATCTATCCTTTGGATATCTATATGGCCGCCAAATTCTCCTTTGTGAGGA
AGTATGAACGTCCGACCGGTATTGATTTGCTTCCACAACATGATTTGTGC
AACATACCGGCTACATTTGGTGAATATCGTGATGACGATGAGGACGTGAA
AGTAACTACATTCGATGGGATACCGAACGTAGCGATGCCCGGCATGTATT
TCTTCGACATTGAAGCTGGGAGTAATGTTCTATGTTTCGCGATGGTGACT
ATTGCTGAAAAGAAAGTCCTGGAGCTCATTGGGTCCCTCCTCCGCCTTCT
CCCACAATCCGCCGTTTGCCTCCCGCTACATCAACCTATCGGGCACAGTA
CCATATACTACCGAGAGGTACACTGGCCAATTTCATGA
back to top

Coding sequence (CDS) from alignment at tig00000888_pilon:611690..612277+

>Ggra10709.t1 ID=Ggra10709.t1|Name=Ggra10709.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=588bp|location=Sequence derived from alignment at tig00000888_pilon:611690..612277+ (Gracilaria gracilis GNS1m male)
ATGAACGTTGAGAGCGGAGATTTGGAAGATGGACATTTCATGCTGTTTGA
CACAGAGAAGTACTCCTGGCAATACAGCTGTCATAGCGTTCGAGAGGACC
TTGGTTGTCAGTTCATCGAACTTGGAATCTGTGTTTGTCGCGACCAAAGT
TCCTATCCTAGAAGTACTACGAGATTTGTTGATCTTGGACTCACACATTT
CATCTATCCTTTGGATATCTATATGGCCGCCAAATTCTCCTTTGTGAGGA
AGTATGAACGTCCGACCGGTATTGATTTGCTTCCACAACATGATTTGTGC
AACATACCGGCTACATTTGGTGAATATCGTGATGACGATGAGGACGTGAA
AGTAACTACATTCGATGGGATACCGAACGTAGCGATGCCCGGCATGTATT
TCTTCGACATTGAAGCTGGGAGTAATGTTCTATGTTTCGCGATGGTGACT
ATTGCTGAAAAGAAAGTCCTGGAGCTCATTGGGTCCCTCCTCCGCCTTCT
CCCACAATCCGCCGTTTGCCTCCCGCTACATCAACCTATCGGGCACAGTA
CCATATACTACCGAGAGGTACACTGGCCAATTTCATGA
back to top