Ggra1070.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1070.t1
Unique NameGgra1070.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length181
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:101578..102120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra81034
PFAMsAcetyltransf_1,PhzC-PhzF
Max annot lvl4776|Peronosporales
Evalue9.23e-25
EggNOG OGsCOG0384@1|root,COG0454@1|root,KOG3033@2759|Eukaryota,KOG4144@2759|Eukaryota,3Q9XE@4776|Peronosporales
DescriptionPhenazine biosynthesis-like protein
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1070Ggra1070Gracilaria gracilis GNS1m malegenetig00000868_pilon 101578..102120 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1070.t1.stop1Ggra1070.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 101578..101580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1070.t1.CDS1Ggra1070.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 101578..102120 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1070.t1.exon1Ggra1070.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 101578..102120 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1070.t1.start1Ggra1070.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 102118..102120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1070.t1Ggra1070.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 101578..102120 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1070.t1 ID=Ggra1070.t1|Name=Ggra1070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=181bp
MLKDSSSSIGNDTGVNLKMELMQAQAVPRVFELERNSYPSDEAASLKAIE
YRTLVTRGLCQIAQNASTKEIIGFVTATAAPEGTDRMTESMMKEHCAAGK
VVCIHSVVIDSGFRRRGLGRQMLSAYVNNIKRIGQYNRILLISKRYLVHF
YESVGFSVIGESAISHGKDTWIELEMLLRH*
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spliced messenger RNA

>Ggra1070.t1 ID=Ggra1070.t1|Name=Ggra1070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp|location=Sequence derived from alignment at tig00000868_pilon:101578..102120- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAAAGATTCAAGCTCGTCAATCGGGAATGACACTGGGGTAAATCT
TAAGATGGAGCTTATGCAGGCACAAGCTGTTCCCAGAGTTTTTGAGCTGG
AGAGAAACAGCTACCCTTCGGATGAAGCGGCATCCTTGAAAGCTATAGAG
TACCGAACATTAGTGACCAGAGGGCTCTGCCAAATTGCACAAAACGCTTC
AACGAAAGAGATTATTGGGTTTGTGACTGCAACCGCGGCTCCAGAAGGCA
CTGATAGAATGACAGAGTCTATGATGAAGGAGCACTGTGCCGCTGGGAAA
GTGGTTTGCATCCATAGCGTGGTTATTGATTCCGGTTTTAGGAGACGTGG
ATTAGGTAGGCAGATGTTGAGCGCTTATGTGAACAACATAAAACGCATTG
GCCAATACAACCGCATCCTACTGATATCCAAACGGTACCTGGTGCATTTC
TACGAATCGGTTGGATTCAGCGTAATCGGGGAAAGTGCTATTTCACATGG
TAAAGACACATGGATCGAACTGGAAATGCTTCTTCGTCACTAA
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protein sequence of Ggra1070.t1

>Ggra1070.t1 ID=Ggra1070.t1|Name=Ggra1070.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=181bp
MLKDSSSSIGNDTGVNLKMELMQAQAVPRVFELERNSYPSDEAASLKAIE
YRTLVTRGLCQIAQNASTKEIIGFVTATAAPEGTDRMTESMMKEHCAAGK
VVCIHSVVIDSGFRRRGLGRQMLSAYVNNIKRIGQYNRILLISKRYLVHF
YESVGFSVIGESAISHGKDTWIELEMLLRH*
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mRNA from alignment at tig00000868_pilon:101578..102120-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1070.t1 ID=Ggra1070.t1|Name=Ggra1070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp|location=Sequence derived from alignment at tig00000868_pilon:101578..102120- (Gracilaria gracilis GNS1m male)
ATGTTGAAAGATTCAAGCTCGTCAATCGGGAATGACACTGGGGTAAATCT
TAAGATGGAGCTTATGCAGGCACAAGCTGTTCCCAGAGTTTTTGAGCTGG
AGAGAAACAGCTACCCTTCGGATGAAGCGGCATCCTTGAAAGCTATAGAG
TACCGAACATTAGTGACCAGAGGGCTCTGCCAAATTGCACAAAACGCTTC
AACGAAAGAGATTATTGGGTTTGTGACTGCAACCGCGGCTCCAGAAGGCA
CTGATAGAATGACAGAGTCTATGATGAAGGAGCACTGTGCCGCTGGGAAA
GTGGTTTGCATCCATAGCGTGGTTATTGATTCCGGTTTTAGGAGACGTGG
ATTAGGTAGGCAGATGTTGAGCGCTTATGTGAACAACATAAAACGCATTG
GCCAATACAACCGCATCCTACTGATATCCAAACGGTACCTGGTGCATTTC
TACGAATCGGTTGGATTCAGCGTAATCGGGGAAAGTGCTATTTCACATGG
TAAAGACACATGGATCGAACTGGAAATGCTTCTTCGTCACTAA
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Coding sequence (CDS) from alignment at tig00000868_pilon:101578..102120-

>Ggra1070.t1 ID=Ggra1070.t1|Name=Ggra1070.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=543bp|location=Sequence derived from alignment at tig00000868_pilon:101578..102120- (Gracilaria gracilis GNS1m male)
ATGTTGAAAGATTCAAGCTCGTCAATCGGGAATGACACTGGGGTAAATCT
TAAGATGGAGCTTATGCAGGCACAAGCTGTTCCCAGAGTTTTTGAGCTGG
AGAGAAACAGCTACCCTTCGGATGAAGCGGCATCCTTGAAAGCTATAGAG
TACCGAACATTAGTGACCAGAGGGCTCTGCCAAATTGCACAAAACGCTTC
AACGAAAGAGATTATTGGGTTTGTGACTGCAACCGCGGCTCCAGAAGGCA
CTGATAGAATGACAGAGTCTATGATGAAGGAGCACTGTGCCGCTGGGAAA
GTGGTTTGCATCCATAGCGTGGTTATTGATTCCGGTTTTAGGAGACGTGG
ATTAGGTAGGCAGATGTTGAGCGCTTATGTGAACAACATAAAACGCATTG
GCCAATACAACCGCATCCTACTGATATCCAAACGGTACCTGGTGCATTTC
TACGAATCGGTTGGATTCAGCGTAATCGGGGAAAGTGCTATTTCACATGG
TAAAGACACATGGATCGAACTGGAAATGCTTCTTCGTCACTAA
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