Ggra10623.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10623.t1
Unique NameGgra10623.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length155
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:414943..415407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog411467.BACCAP_02117
PFAMsDUF177
Max annot lvl186801|Clostridia
KEGG koko:K07040
Evalue5.36e-08
EggNOG OGsCOG1399@1|root,COG1399@2|Bacteria,1VEXU@1239|Firmicutes,24RKT@186801|Clostridia,268VN@186813|unclassified Clostridiales
DescriptionUncharacterized ACR, COG1399
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10623Ggra10623Gracilaria gracilis GNS1m malegenetig00000904_pilon 414943..415407 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10623.t1.stop1Ggra10623.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 414943..414945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10623.t1.CDS1Ggra10623.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 414943..415407 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10623.t1.exon1Ggra10623.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 414943..415407 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10623.t1.start1Ggra10623.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 415405..415407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10623.t1Ggra10623.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 414943..415407 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10623.t1 ID=Ggra10623.t1|Name=Ggra10623.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=155bp
MPIEDRAKDEEVTVWLVASKEKGGILLRGRAKGYLKRSCDRCGSVYDEVS
DGIFDVLLKSELGEIDDSLYDDVQTVDSDEIEVSGHVRDALYLGMQSRAL
CKDDCAGLGINQQTEDGLAFEDMDDEADEGGTIAQLAAGNALLEMKKRLE
QKGI*
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spliced messenger RNA

>Ggra10623.t1 ID=Ggra10623.t1|Name=Ggra10623.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp|location=Sequence derived from alignment at tig00000904_pilon:414943..415407- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTATTGAAGACCGCGCTAAGGATGAAGAAGTGACAGTGTGGTTGGT
TGCTTCAAAAGAAAAAGGTGGAATTCTGCTCCGTGGAAGGGCAAAGGGCT
ATCTGAAACGCTCATGTGACCGATGCGGATCTGTTTATGATGAAGTGAGT
GATGGCATTTTCGACGTATTGCTGAAGTCAGAACTGGGAGAGATTGATGA
TAGTTTGTATGACGACGTGCAAACCGTCGATTCCGATGAGATTGAAGTGA
GTGGACACGTCAGGGATGCTCTGTATCTCGGTATGCAGTCGAGGGCTTTA
TGCAAAGACGACTGTGCGGGCCTTGGTATTAATCAGCAGACTGAAGATGG
TCTTGCGTTTGAAGACATGGACGACGAAGCGGATGAGGGAGGTACTATTG
CGCAACTCGCGGCTGGGAATGCTTTGCTAGAGATGAAGAAACGATTGGAA
CAGAAGGGCATTTGA
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protein sequence of Ggra10623.t1

>Ggra10623.t1 ID=Ggra10623.t1|Name=Ggra10623.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=155bp
MPIEDRAKDEEVTVWLVASKEKGGILLRGRAKGYLKRSCDRCGSVYDEVS
DGIFDVLLKSELGEIDDSLYDDVQTVDSDEIEVSGHVRDALYLGMQSRAL
CKDDCAGLGINQQTEDGLAFEDMDDEADEGGTIAQLAAGNALLEMKKRLE
QKGI*
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mRNA from alignment at tig00000904_pilon:414943..415407-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10623.t1 ID=Ggra10623.t1|Name=Ggra10623.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp|location=Sequence derived from alignment at tig00000904_pilon:414943..415407- (Gracilaria gracilis GNS1m male)
ATGCCTATTGAAGACCGCGCTAAGGATGAAGAAGTGACAGTGTGGTTGGT
TGCTTCAAAAGAAAAAGGTGGAATTCTGCTCCGTGGAAGGGCAAAGGGCT
ATCTGAAACGCTCATGTGACCGATGCGGATCTGTTTATGATGAAGTGAGT
GATGGCATTTTCGACGTATTGCTGAAGTCAGAACTGGGAGAGATTGATGA
TAGTTTGTATGACGACGTGCAAACCGTCGATTCCGATGAGATTGAAGTGA
GTGGACACGTCAGGGATGCTCTGTATCTCGGTATGCAGTCGAGGGCTTTA
TGCAAAGACGACTGTGCGGGCCTTGGTATTAATCAGCAGACTGAAGATGG
TCTTGCGTTTGAAGACATGGACGACGAAGCGGATGAGGGAGGTACTATTG
CGCAACTCGCGGCTGGGAATGCTTTGCTAGAGATGAAGAAACGATTGGAA
CAGAAGGGCATTTGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:414943..415407-

>Ggra10623.t1 ID=Ggra10623.t1|Name=Ggra10623.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=465bp|location=Sequence derived from alignment at tig00000904_pilon:414943..415407- (Gracilaria gracilis GNS1m male)
ATGCCTATTGAAGACCGCGCTAAGGATGAAGAAGTGACAGTGTGGTTGGT
TGCTTCAAAAGAAAAAGGTGGAATTCTGCTCCGTGGAAGGGCAAAGGGCT
ATCTGAAACGCTCATGTGACCGATGCGGATCTGTTTATGATGAAGTGAGT
GATGGCATTTTCGACGTATTGCTGAAGTCAGAACTGGGAGAGATTGATGA
TAGTTTGTATGACGACGTGCAAACCGTCGATTCCGATGAGATTGAAGTGA
GTGGACACGTCAGGGATGCTCTGTATCTCGGTATGCAGTCGAGGGCTTTA
TGCAAAGACGACTGTGCGGGCCTTGGTATTAATCAGCAGACTGAAGATGG
TCTTGCGTTTGAAGACATGGACGACGAAGCGGATGAGGGAGGTACTATTG
CGCAACTCGCGGCTGGGAATGCTTTGCTAGAGATGAAGAAACGATTGGAA
CAGAAGGGCATTTGA
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