Ggra10612.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10612.t1
Unique NameGgra10612.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length548
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:387301..388944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15726053
Max annot lvl400682.PAC_15726053|-
KEGG rclassRC00005,RC00049
KEGG koko:K13499
KEGG ReactionR04603,R05931,R05932,R05933,R05934,R07336
KEGG Pathwayko00532,ko01100,map00532,map01100
KEGG ModuleM00058
Evalue5.8e-32
EggNOG OGsKOG3588@1|root,KOG3588@2759|Eukaryota,38D3Y@33154|Opisthokonta,3BBF5@33208|Metazoa
EC2.4.1.175,2.4.1.226
DescriptionChondroitin sulfate synthase
COG categoryG
CAZyGT31,GT7
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10612Ggra10612Gracilaria gracilis GNS1m malegenetig00000904_pilon 387301..388944 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10612.t1.stop1Ggra10612.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 387301..387303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10612.t1.CDS1Ggra10612.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 387301..388944 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10612.t1.exon1Ggra10612.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 387301..388944 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10612.t1.start1Ggra10612.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 388942..388944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10612.t1Ggra10612.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 387301..388944 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10612.t1 ID=Ggra10612.t1|Name=Ggra10612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=548bp
MVANTFVSTSRRFRTTSTIASSPPLPVHRRPTPPKPHFRFSWGLLLVPIS
CLILFGGVLLWKPSQRASPPSLQASFGRLPTAQLERFFSAAVPAVSNPSA
AFADRPPRLLSGGHDGHAFFMTDDVSDSFFGKCYVSSQRSMFHPCLSRGA
DRAEIEGRRFAKQPRDFDDVFAVVGEKRFLYHADRPSVHTVDELGAGLDT
DYDDVRKVAISLIQQDVKKGTLNNFNTPVVYMRNTRRDGFQSIVNVRAVV
EYYNRNGTKRASKPNVSRVVTVTKGYGKPCQVHFVRPHEAVRIHIIVAYS
GRPSRLATFLTMFDVYFKKTQTDLLRVIIATTEKEEPQIKSELKKYKQLT
STRIKIARSRGDVNGGFSRAVAIREAAKLVPDKEIMFFSDVDLVIRGNFL
QNCRMNSIRGSQVWFPVMFSLYPHGKSLSSKDGFWRRSSYGMVCMYKADF
DKVGGFGGNEEKKFQGWGSEDVFLYNQFRDDADYAVFRTLEPGLLHQWHS
KECPRNKHYKDCMRTVYMTLGSQETVAKLMADADVDISVLTKDALPA*
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spliced messenger RNA

>Ggra10612.t1 ID=Ggra10612.t1|Name=Ggra10612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000904_pilon:387301..388944- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGCTAATACCTTTGTGAGCACTTCTCGTCGCTTTCGCACAACCTC
AACCATTGCCTCCTCTCCGCCATTGCCGGTACATCGCCGTCCCACACCAC
CTAAGCCGCACTTTCGCTTCTCTTGGGGCCTGCTTCTTGTACCCATATCT
TGTTTAATATTGTTCGGAGGAGTTTTGTTATGGAAGCCCTCACAGCGCGC
CAGCCCTCCTAGCCTACAAGCGTCCTTTGGCCGTTTGCCAACTGCCCAGT
TGGAACGTTTCTTTTCGGCTGCAGTGCCTGCTGTGTCGAATCCATCAGCA
GCCTTTGCCGATCGTCCACCACGCCTTCTTAGTGGTGGGCATGATGGCCA
CGCCTTTTTTATGACAGATGATGTAAGCGACTCCTTCTTTGGGAAGTGTT
ATGTCTCCTCACAGCGTTCCATGTTTCATCCTTGCCTCAGTCGCGGTGCT
GATCGCGCAGAGATCGAGGGAAGACGATTCGCCAAACAACCTAGAGATTT
TGATGATGTTTTTGCGGTCGTCGGTGAGAAACGATTTCTTTACCACGCTG
ATCGCCCCAGTGTGCATACGGTTGATGAACTAGGGGCCGGGTTGGACACA
GATTATGATGATGTTCGAAAGGTTGCCATCTCACTCATACAACAAGATGT
TAAGAAGGGTACTCTAAACAATTTTAACACGCCTGTCGTATACATGCGTA
ATACTCGTCGCGATGGCTTTCAGAGCATTGTTAATGTCCGGGCTGTCGTC
GAATACTATAACCGCAACGGTACCAAACGTGCCTCAAAGCCCAACGTAAG
TCGTGTAGTGACGGTAACGAAGGGCTACGGAAAACCTTGCCAAGTACATT
TTGTGCGCCCTCATGAAGCAGTGCGCATCCACATAATAGTGGCATATTCC
GGGCGTCCCTCTAGGTTGGCGACCTTCTTGACTATGTTTGATGTCTACTT
TAAGAAGACCCAAACTGACCTGCTTCGCGTCATAATCGCCACTACGGAGA
AAGAAGAACCGCAGATCAAGTCTGAATTGAAGAAATATAAACAACTCACT
TCGACTAGGATCAAAATAGCGCGTTCCCGTGGAGATGTGAATGGTGGTTT
TTCACGCGCTGTGGCAATACGAGAGGCAGCTAAGCTTGTTCCTGACAAGG
AGATCATGTTTTTCTCAGATGTGGACCTTGTTATTCGTGGAAACTTCCTG
CAAAACTGCAGAATGAATTCTATTAGGGGATCCCAAGTATGGTTTCCTGT
GATGTTTTCATTATATCCGCATGGAAAGTCCTTGTCGAGTAAGGATGGAT
TTTGGCGAAGGAGCAGCTATGGAATGGTCTGTATGTACAAGGCTGACTTT
GACAAGGTTGGTGGTTTCGGAGGAAATGAAGAAAAGAAGTTCCAAGGTTG
GGGTTCAGAAGATGTTTTCCTGTACAATCAGTTCAGGGATGATGCGGACT
ATGCAGTGTTTCGTACGCTTGAGCCCGGTTTGTTACATCAGTGGCATAGC
AAAGAATGCCCAAGAAACAAGCACTACAAGGATTGTATGCGAACTGTGTA
CATGACACTCGGTAGCCAGGAAACAGTAGCAAAGCTGATGGCAGACGCCG
ATGTGGATATCTCCGTCTTAACCAAAGATGCGCTCCCAGCTTAA
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protein sequence of Ggra10612.t1

>Ggra10612.t1 ID=Ggra10612.t1|Name=Ggra10612.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=548bp
MVANTFVSTSRRFRTTSTIASSPPLPVHRRPTPPKPHFRFSWGLLLVPIS
CLILFGGVLLWKPSQRASPPSLQASFGRLPTAQLERFFSAAVPAVSNPSA
AFADRPPRLLSGGHDGHAFFMTDDVSDSFFGKCYVSSQRSMFHPCLSRGA
DRAEIEGRRFAKQPRDFDDVFAVVGEKRFLYHADRPSVHTVDELGAGLDT
DYDDVRKVAISLIQQDVKKGTLNNFNTPVVYMRNTRRDGFQSIVNVRAVV
EYYNRNGTKRASKPNVSRVVTVTKGYGKPCQVHFVRPHEAVRIHIIVAYS
GRPSRLATFLTMFDVYFKKTQTDLLRVIIATTEKEEPQIKSELKKYKQLT
STRIKIARSRGDVNGGFSRAVAIREAAKLVPDKEIMFFSDVDLVIRGNFL
QNCRMNSIRGSQVWFPVMFSLYPHGKSLSSKDGFWRRSSYGMVCMYKADF
DKVGGFGGNEEKKFQGWGSEDVFLYNQFRDDADYAVFRTLEPGLLHQWHS
KECPRNKHYKDCMRTVYMTLGSQETVAKLMADADVDISVLTKDALPA*
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mRNA from alignment at tig00000904_pilon:387301..388944-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10612.t1 ID=Ggra10612.t1|Name=Ggra10612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000904_pilon:387301..388944- (Gracilaria gracilis GNS1m male)
ATGGTAGCTAATACCTTTGTGAGCACTTCTCGTCGCTTTCGCACAACCTC
AACCATTGCCTCCTCTCCGCCATTGCCGGTACATCGCCGTCCCACACCAC
CTAAGCCGCACTTTCGCTTCTCTTGGGGCCTGCTTCTTGTACCCATATCT
TGTTTAATATTGTTCGGAGGAGTTTTGTTATGGAAGCCCTCACAGCGCGC
CAGCCCTCCTAGCCTACAAGCGTCCTTTGGCCGTTTGCCAACTGCCCAGT
TGGAACGTTTCTTTTCGGCTGCAGTGCCTGCTGTGTCGAATCCATCAGCA
GCCTTTGCCGATCGTCCACCACGCCTTCTTAGTGGTGGGCATGATGGCCA
CGCCTTTTTTATGACAGATGATGTAAGCGACTCCTTCTTTGGGAAGTGTT
ATGTCTCCTCACAGCGTTCCATGTTTCATCCTTGCCTCAGTCGCGGTGCT
GATCGCGCAGAGATCGAGGGAAGACGATTCGCCAAACAACCTAGAGATTT
TGATGATGTTTTTGCGGTCGTCGGTGAGAAACGATTTCTTTACCACGCTG
ATCGCCCCAGTGTGCATACGGTTGATGAACTAGGGGCCGGGTTGGACACA
GATTATGATGATGTTCGAAAGGTTGCCATCTCACTCATACAACAAGATGT
TAAGAAGGGTACTCTAAACAATTTTAACACGCCTGTCGTATACATGCGTA
ATACTCGTCGCGATGGCTTTCAGAGCATTGTTAATGTCCGGGCTGTCGTC
GAATACTATAACCGCAACGGTACCAAACGTGCCTCAAAGCCCAACGTAAG
TCGTGTAGTGACGGTAACGAAGGGCTACGGAAAACCTTGCCAAGTACATT
TTGTGCGCCCTCATGAAGCAGTGCGCATCCACATAATAGTGGCATATTCC
GGGCGTCCCTCTAGGTTGGCGACCTTCTTGACTATGTTTGATGTCTACTT
TAAGAAGACCCAAACTGACCTGCTTCGCGTCATAATCGCCACTACGGAGA
AAGAAGAACCGCAGATCAAGTCTGAATTGAAGAAATATAAACAACTCACT
TCGACTAGGATCAAAATAGCGCGTTCCCGTGGAGATGTGAATGGTGGTTT
TTCACGCGCTGTGGCAATACGAGAGGCAGCTAAGCTTGTTCCTGACAAGG
AGATCATGTTTTTCTCAGATGTGGACCTTGTTATTCGTGGAAACTTCCTG
CAAAACTGCAGAATGAATTCTATTAGGGGATCCCAAGTATGGTTTCCTGT
GATGTTTTCATTATATCCGCATGGAAAGTCCTTGTCGAGTAAGGATGGAT
TTTGGCGAAGGAGCAGCTATGGAATGGTCTGTATGTACAAGGCTGACTTT
GACAAGGTTGGTGGTTTCGGAGGAAATGAAGAAAAGAAGTTCCAAGGTTG
GGGTTCAGAAGATGTTTTCCTGTACAATCAGTTCAGGGATGATGCGGACT
ATGCAGTGTTTCGTACGCTTGAGCCCGGTTTGTTACATCAGTGGCATAGC
AAAGAATGCCCAAGAAACAAGCACTACAAGGATTGTATGCGAACTGTGTA
CATGACACTCGGTAGCCAGGAAACAGTAGCAAAGCTGATGGCAGACGCCG
ATGTGGATATCTCCGTCTTAACCAAAGATGCGCTCCCAGCTTAA
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Coding sequence (CDS) from alignment at tig00000904_pilon:387301..388944-

>Ggra10612.t1 ID=Ggra10612.t1|Name=Ggra10612.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1644bp|location=Sequence derived from alignment at tig00000904_pilon:387301..388944- (Gracilaria gracilis GNS1m male)
ATGGTAGCTAATACCTTTGTGAGCACTTCTCGTCGCTTTCGCACAACCTC
AACCATTGCCTCCTCTCCGCCATTGCCGGTACATCGCCGTCCCACACCAC
CTAAGCCGCACTTTCGCTTCTCTTGGGGCCTGCTTCTTGTACCCATATCT
TGTTTAATATTGTTCGGAGGAGTTTTGTTATGGAAGCCCTCACAGCGCGC
CAGCCCTCCTAGCCTACAAGCGTCCTTTGGCCGTTTGCCAACTGCCCAGT
TGGAACGTTTCTTTTCGGCTGCAGTGCCTGCTGTGTCGAATCCATCAGCA
GCCTTTGCCGATCGTCCACCACGCCTTCTTAGTGGTGGGCATGATGGCCA
CGCCTTTTTTATGACAGATGATGTAAGCGACTCCTTCTTTGGGAAGTGTT
ATGTCTCCTCACAGCGTTCCATGTTTCATCCTTGCCTCAGTCGCGGTGCT
GATCGCGCAGAGATCGAGGGAAGACGATTCGCCAAACAACCTAGAGATTT
TGATGATGTTTTTGCGGTCGTCGGTGAGAAACGATTTCTTTACCACGCTG
ATCGCCCCAGTGTGCATACGGTTGATGAACTAGGGGCCGGGTTGGACACA
GATTATGATGATGTTCGAAAGGTTGCCATCTCACTCATACAACAAGATGT
TAAGAAGGGTACTCTAAACAATTTTAACACGCCTGTCGTATACATGCGTA
ATACTCGTCGCGATGGCTTTCAGAGCATTGTTAATGTCCGGGCTGTCGTC
GAATACTATAACCGCAACGGTACCAAACGTGCCTCAAAGCCCAACGTAAG
TCGTGTAGTGACGGTAACGAAGGGCTACGGAAAACCTTGCCAAGTACATT
TTGTGCGCCCTCATGAAGCAGTGCGCATCCACATAATAGTGGCATATTCC
GGGCGTCCCTCTAGGTTGGCGACCTTCTTGACTATGTTTGATGTCTACTT
TAAGAAGACCCAAACTGACCTGCTTCGCGTCATAATCGCCACTACGGAGA
AAGAAGAACCGCAGATCAAGTCTGAATTGAAGAAATATAAACAACTCACT
TCGACTAGGATCAAAATAGCGCGTTCCCGTGGAGATGTGAATGGTGGTTT
TTCACGCGCTGTGGCAATACGAGAGGCAGCTAAGCTTGTTCCTGACAAGG
AGATCATGTTTTTCTCAGATGTGGACCTTGTTATTCGTGGAAACTTCCTG
CAAAACTGCAGAATGAATTCTATTAGGGGATCCCAAGTATGGTTTCCTGT
GATGTTTTCATTATATCCGCATGGAAAGTCCTTGTCGAGTAAGGATGGAT
TTTGGCGAAGGAGCAGCTATGGAATGGTCTGTATGTACAAGGCTGACTTT
GACAAGGTTGGTGGTTTCGGAGGAAATGAAGAAAAGAAGTTCCAAGGTTG
GGGTTCAGAAGATGTTTTCCTGTACAATCAGTTCAGGGATGATGCGGACT
ATGCAGTGTTTCGTACGCTTGAGCCCGGTTTGTTACATCAGTGGCATAGC
AAAGAATGCCCAAGAAACAAGCACTACAAGGATTGTATGCGAACTGTGTA
CATGACACTCGGTAGCCAGGAAACAGTAGCAAAGCTGATGGCAGACGCCG
ATGTGGATATCTCCGTCTTAACCAAAGATGCGCTCCCAGCTTAA
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