Ggra10579.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10579.t1
Unique NameGgra10579.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:304777..305420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704666.1
Preferred namePETF2
PFAMsFer2
Max annot lvl2759|Eukaryota
KEGG koko:K02639
KEGG Pathwayko00195,map00195
Evalue3.47e-49
EggNOG OGsCOG0633@1|root,2RXRY@2759|Eukaryota
Description2Fe-2S iron-sulfur cluster binding domain
COG categoryC
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10579Ggra10579Gracilaria gracilis GNS1m malegenetig00000904_pilon 304777..305420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10579.t1Ggra10579.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 304777..305420 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10579.t1.start1Ggra10579.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 304777..304779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10579.t1.CDS1Ggra10579.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 304777..304932 +
Ggra10579.t1.CDS2Ggra10579.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 305043..305420 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10579.t1.exon1Ggra10579.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 304777..304932 +
Ggra10579.t1.exon2Ggra10579.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 305043..305420 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10579.t1.intron1Ggra10579.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 304933..305042 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10579.t1.stop1Ggra10579.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 305418..305420 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MNLAFLSPFLPHRSGASARPVPKCVQQPPSPPSSPQTSAKPTNRRREGSL
PGTPGAKTYNVTVEDPRNRTVHKYSVPEDRYVWHSMTDQGADLPASCRHG
CCTTCAVKIKSGQVDQDQALGLLKEMRANGYALLCVSYPKSDIHCVLQDE
DEVYVKQFGSSFESGGTDWGGFVPEDD*
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spliced messenger RNA

>Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000904_pilon:304777..305420+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTGGCCTTCTTGTCTCCGTTCTTGCCCCATCGCTCTGGAGCCTC
CGCCCGTCCAGTGCCCAAATGTGTTCAACAGCCGCCCTCCCCTCCATCCT
CGCCACAAACTTCAGCAAAGCCCACCAATCGTAGAAGAGAAGGCTCACTA
CCAGGCACACCAGGCGCAAAAACGTATAATGTAACTGTTGAAGACCCTCG
TAACCGTACTGTTCACAAGTACTCTGTACCTGAGGATCGATATGTGTGGC
ATAGCATGACCGATCAGGGTGCAGATTTGCCGGCCTCATGTCGGCATGGT
TGCTGCACAACGTGCGCTGTCAAGATAAAGAGCGGTCAAGTTGATCAAGA
CCAGGCTCTCGGACTACTGAAAGAAATGAGAGCAAACGGTTATGCCTTGT
TGTGCGTCAGTTACCCTAAGAGCGACATACACTGTGTTCTTCAGGATGAA
GATGAAGTCTACGTCAAACAATTTGGCTCTTCATTCGAGAGTGGTGGTAC
CGACTGGGGTGGCTTTGTACCAGAAGATGACTAA
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protein sequence of Ggra10579.t1

>Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MNLAFLSPFLPHRSGASARPVPKCVQQPPSPPSSPQTSAKPTNRRREGSL
PGTPGAKTYNVTVEDPRNRTVHKYSVPEDRYVWHSMTDQGADLPASCRHG
CCTTCAVKIKSGQVDQDQALGLLKEMRANGYALLCVSYPKSDIHCVLQDE
DEVYVKQFGSSFESGGTDWGGFVPEDD*
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mRNA from alignment at tig00000904_pilon:304777..305420+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=644bp|location=Sequence derived from alignment at tig00000904_pilon:304777..305420+ (Gracilaria gracilis GNS1m male)
ATGAATCTGGCCTTCTTGTCTCCGTTCTTGCCCCATCGCTCTGGAGCCTC
CGCCCGTCCAGTGCCCAAATGTGTTCAACAGCCGCCCTCCCCTCCATCCT
CGCCACAAACTTCAGCAAAGCCCACCAATCGTAGAAGAGAAGGCTCACTA
CCAGGCGTACGTTCGTCGCTCACCTTCATCCGTCCATACTTTTTGTTTCA
CATCCAACCAAAAGCGCGTTGCTCACACTTCTCCCGCTTCTGCCTTTTGT
ATCCCGCAACTCTCAGACACCAGGCGCAAAAACGTATAATGTAACTGTTG
AAGACCCTCGTAACCGTACTGTTCACAAGTACTCTGTACCTGAGGATCGA
TATGTGTGGCATAGCATGACCGATCAGGGTGCAGATTTGCCGGCCTCATG
TCGGCATGGTTGCTGCACAACGTGCGCTGTCAAGATAAAGAGCGGTCAAG
TTGATCAAGACCAGGCTCTCGGACTACTGAAAGAAATGAGAGCAAACGGT
TATGCCTTGTTGTGCGTCAGTTACCCTAAGAGCGACATACACTGTGTTCT
TCAGGATGAAGATGAAGTCTACGTCAAACAATTTGGCTCTTCATTCGAGA
GTGGTGGTACCGACTGGGGTGGCTTTGTACCAGAAGATGACTAA
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Coding sequence (CDS) from alignment at tig00000904_pilon:304777..305420+

>Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000904_pilon:304777..305420+ (Gracilaria gracilis GNS1m male)
ATGAATCTGGCCTTCTTGTCTCCGTTCTTGCCCCATCGCTCTGGAGCCTC
CGCCCGTCCAGTGCCCAAATGTGTTCAACAGCCGCCCTCCCCTCCATCCT
CGCCACAAACTTCAGCAAAGCCCACCAATCGTAGAAGAGAAGGCTCACTA
CCAGGCACACCAGGCGCAAAAACGTATAATGTAACTGTTGAAGACCCTCG
TAACCGTACTGTTCACAAGTACTCTGTACCTGAGGATCGATATGTGTGGC
ATAGCATGACCGATCAGGGTGCAGATTTGCCGGCCTCATGTCGGCATGGT
TGCTGCACAACGTGCGCTGTCAAGATAAAGAGCGGTCAAGTTGATCAAGA
CCAGGCTCTCGGACTACTGAAAGAAATGAGAGCAAACGGTTATGCCTTGT
TGTGCGTCAGTTACCCTAAGAGCGACATACACTGTGTTCTTCAGGATGAA
GATGAAGTCTACGTCAAACAATTTGGCTCTTCATTCGAGAGTGGTGGTAC
CGACTGGGGTGGCTTTGTACCAGAAGATGACTAA
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