Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005704666.1 |
| Preferred name | PETF2 |
| PFAMs | Fer2 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K02639 |
| KEGG Pathway | ko00195,map00195 |
| Evalue | 3.47e-49 |
| EggNOG OGs | COG0633@1|root,2RXRY@2759|Eukaryota |
| Description | 2Fe-2S iron-sulfur cluster binding domain |
| COG category | C |
| BRITE | ko00000,ko00001,ko00194 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10579.t1.start1 | Ggra10579.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 304777..304779 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10579.t1.intron1 | Ggra10579.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000904_pilon 304933..305042 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10579.t1.stop1 | Ggra10579.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 305418..305420 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MNLAFLSPFLPHRSGASARPVPKCVQQPPSPPSSPQTSAKPTNRRREGSL
PGTPGAKTYNVTVEDPRNRTVHKYSVPEDRYVWHSMTDQGADLPASCRHG
CCTTCAVKIKSGQVDQDQALGLLKEMRANGYALLCVSYPKSDIHCVLQDE
DEVYVKQFGSSFESGGTDWGGFVPEDD* back to topspliced messenger RNA >Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000904_pilon:304777..305420+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAATCTGGCCTTCTTGTCTCCGTTCTTGCCCCATCGCTCTGGAGCCTC
CGCCCGTCCAGTGCCCAAATGTGTTCAACAGCCGCCCTCCCCTCCATCCT
CGCCACAAACTTCAGCAAAGCCCACCAATCGTAGAAGAGAAGGCTCACTA
CCAGGCACACCAGGCGCAAAAACGTATAATGTAACTGTTGAAGACCCTCG
TAACCGTACTGTTCACAAGTACTCTGTACCTGAGGATCGATATGTGTGGC
ATAGCATGACCGATCAGGGTGCAGATTTGCCGGCCTCATGTCGGCATGGT
TGCTGCACAACGTGCGCTGTCAAGATAAAGAGCGGTCAAGTTGATCAAGA
CCAGGCTCTCGGACTACTGAAAGAAATGAGAGCAAACGGTTATGCCTTGT
TGTGCGTCAGTTACCCTAAGAGCGACATACACTGTGTTCTTCAGGATGAA
GATGAAGTCTACGTCAAACAATTTGGCTCTTCATTCGAGAGTGGTGGTAC
CGACTGGGGTGGCTTTGTACCAGAAGATGACTAA back to topprotein sequence of Ggra10579.t1 >Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MNLAFLSPFLPHRSGASARPVPKCVQQPPSPPSSPQTSAKPTNRRREGSL
PGTPGAKTYNVTVEDPRNRTVHKYSVPEDRYVWHSMTDQGADLPASCRHG
CCTTCAVKIKSGQVDQDQALGLLKEMRANGYALLCVSYPKSDIHCVLQDE
DEVYVKQFGSSFESGGTDWGGFVPEDD* back to topmRNA from alignment at tig00000904_pilon:304777..305420+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=644bp|location=Sequence derived from alignment at tig00000904_pilon:304777..305420+ (Gracilaria gracilis GNS1m male)
ATGAATCTGGCCTTCTTGTCTCCGTTCTTGCCCCATCGCTCTGGAGCCTC
CGCCCGTCCAGTGCCCAAATGTGTTCAACAGCCGCCCTCCCCTCCATCCT
CGCCACAAACTTCAGCAAAGCCCACCAATCGTAGAAGAGAAGGCTCACTA
CCAGGCGTACGTTCGTCGCTCACCTTCATCCGTCCATACTTTTTGTTTCA
CATCCAACCAAAAGCGCGTTGCTCACACTTCTCCCGCTTCTGCCTTTTGT
ATCCCGCAACTCTCAGACACCAGGCGCAAAAACGTATAATGTAACTGTTG
AAGACCCTCGTAACCGTACTGTTCACAAGTACTCTGTACCTGAGGATCGA
TATGTGTGGCATAGCATGACCGATCAGGGTGCAGATTTGCCGGCCTCATG
TCGGCATGGTTGCTGCACAACGTGCGCTGTCAAGATAAAGAGCGGTCAAG
TTGATCAAGACCAGGCTCTCGGACTACTGAAAGAAATGAGAGCAAACGGT
TATGCCTTGTTGTGCGTCAGTTACCCTAAGAGCGACATACACTGTGTTCT
TCAGGATGAAGATGAAGTCTACGTCAAACAATTTGGCTCTTCATTCGAGA
GTGGTGGTACCGACTGGGGTGGCTTTGTACCAGAAGATGACTAA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:304777..305420+ >Ggra10579.t1 ID=Ggra10579.t1|Name=Ggra10579.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000904_pilon:304777..305420+ (Gracilaria gracilis GNS1m male)
ATGAATCTGGCCTTCTTGTCTCCGTTCTTGCCCCATCGCTCTGGAGCCTC
CGCCCGTCCAGTGCCCAAATGTGTTCAACAGCCGCCCTCCCCTCCATCCT
CGCCACAAACTTCAGCAAAGCCCACCAATCGTAGAAGAGAAGGCTCACTA
CCAGGCACACCAGGCGCAAAAACGTATAATGTAACTGTTGAAGACCCTCG
TAACCGTACTGTTCACAAGTACTCTGTACCTGAGGATCGATATGTGTGGC
ATAGCATGACCGATCAGGGTGCAGATTTGCCGGCCTCATGTCGGCATGGT
TGCTGCACAACGTGCGCTGTCAAGATAAAGAGCGGTCAAGTTGATCAAGA
CCAGGCTCTCGGACTACTGAAAGAAATGAGAGCAAACGGTTATGCCTTGT
TGTGCGTCAGTTACCCTAAGAGCGACATACACTGTGTTCTTCAGGATGAA
GATGAAGTCTACGTCAAACAATTTGGCTCTTCATTCGAGAGTGGTGGTAC
CGACTGGGGTGGCTTTGTACCAGAAGATGACTAA back to top
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