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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005703690.1 |
| Preferred name | YIPF6 |
| PFAMs | Yip1 |
| Max annot lvl | 2759|Eukaryota |
| GOs | GO:0000138,GO:0002064,GO:0002065,GO:0002066,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005802,GO:0007275,GO:0008150,GO:0009888,GO:0009987,GO:0012505,GO:0030134,GO:0030135,GO:0030154,GO:0030855,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0035295,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048565,GO:0048731,GO:0048856,GO:0048869,GO:0055123,GO:0060429,GO:0060575,GO:0060576,GO:0097708,GO:0098791 |
| Evalue | 5.06e-72 |
| EggNOG OGs | COG5080@1|root,KOG2946@2759|Eukaryota |
| Description | intestinal epithelial cell development |
| COG category | U |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10575.t1.stop1 | Ggra10575.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 297156..297158 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10575.t1.start1 | Ggra10575.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 298224..298226 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MADLAQQFGENTIEEPVSETIFRDLRLVGRRLLMVMIPSISSSEKRAELR
DWDLWGPFFLCMSLAVMLSITAHDQASVVFSVIFVIVWVGAAVITVNGQL
LGGRLSFFQSVCLLGYCIFPILLSAVACWIINSFVKNDLAVIFRFVSVIV
SLLWSIWASSSFMTDARFPEGRKLLALYPVVLFYLSLAWIVLIGFQRGSV
PHAAVAEGTLPSNGTAAPVSEGSRMLLRDDYLNVRDRVL* back to topspliced messenger RNA >Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000904_pilon:297156..298226- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCGATTTAGCGCAACAATTCGGCGAGAATACCATCGAGGAACCCGT
ATCAGAAACCATTTTTCGCGATCTGCGACTCGTCGGACGACGCCTTCTGA
TGGTTATGATTCCATCAATAAGCTCCAGTGAGAAGCGTGCGGAACTTCGC
GATTGGGATCTGTGGGGCCCCTTCTTCCTGTGCATGTCCTTAGCTGTTAT
GCTCAGCATTACCGCACACGACCAAGCTTCAGTTGTTTTCTCAGTCATAT
TTGTTATAGTCTGGGTCGGTGCTGCTGTCATTACCGTCAATGGACAACTT
TTAGGCGGAAGACTCTCTTTCTTTCAAAGCGTTTGTCTTCTGGGATACTG
TATCTTTCCCATTCTTCTCAGTGCCGTTGCTTGTTGGATAATTAACTCAT
TTGTCAAGAACGACCTAGCAGTAATATTTCGCTTTGTGTCAGTTATTGTA
TCGCTTCTCTGGTCAATATGGGCCTCCTCTAGTTTCATGACTGACGCCAG
ATTCCCAGAAGGTCGAAAGTTGTTGGCCTTGTACCCCGTGGTTCTTTTCT
ATCTCTCTCTCGCGTGGATTGTGCTAATTGGTTTCCAACGTGGATCTGTC
CCACATGCAGCCGTCGCGGAAGGAACTCTCCCGAGTAATGGAACTGCTGC
ACCCGTTTCTGAAGGAAGTCGCATGCTTTTGCGAGATGATTATCTCAATG
TACGAGATCGTGTGCTTTAA back to topprotein sequence of Ggra10575.t1 >Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MADLAQQFGENTIEEPVSETIFRDLRLVGRRLLMVMIPSISSSEKRAELR
DWDLWGPFFLCMSLAVMLSITAHDQASVVFSVIFVIVWVGAAVITVNGQL
LGGRLSFFQSVCLLGYCIFPILLSAVACWIINSFVKNDLAVIFRFVSVIV
SLLWSIWASSSFMTDARFPEGRKLLALYPVVLFYLSLAWIVLIGFQRGSV
PHAAVAEGTLPSNGTAAPVSEGSRMLLRDDYLNVRDRVL* back to topmRNA from alignment at tig00000904_pilon:297156..298226- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000904_pilon:297156..298226- (Gracilaria gracilis GNS1m male)
ATGGCCGATTTAGCGCAACAATTCGGCGAGAATACCATCGAGGAACCCGT
ATCAGAAACCATTTTTCGCGATCTGCGACTCGTACGTGTATACTTTCCGC
CACACCAAACGTGCAAACCGATATCCACCACCATTTCTAACTCGCTACGC
GCTACTTGCGAAACGGCTCAACATAGGTCGGACGACGCCTTCTGATGGTT
ATGATTCCATCAATAAGCTCCGTAAGGATATTCATTTCATTACTTCTACC
AAAACAATAGTCGAACAATGTTGGTTACTGACTAATTATCGTTTTAGAGT
GAGAAGCGTGCGGAACTTCGCGATTGGGATCTGTGGGGCCCCTTCTTCCT
GTGCATGTCCTTAGCTGTTATGCTCAGCATTACCGCACACGACCAAGCTT
CAGTTGTTTTCTCAGTCATATTTGTTATAGTCTGGGTCGGTGCTGCTGTC
ATTACCGTCAATGGACAACTTTTAGGCGGAAGACTGTATGTGATGCTCTC
TAATATCAAATTGCGTTTCGTCTGCGAGATTACTAACGGCAACCATCTTC
TTGCCTTGCAGCTCTTTCTTTCAAAGCGTTTGTCTTCTGGGATACTGTAT
CTTTCCCATTCTTCTCAGTGCCGTTGCTTGTTGGATAATTAACTCATTTG
TCAAGAACGACCTAGCAGTAATATTTCGCTTTGTGTCAGTTATTGTATCG
CTTCTCTGGTCAATATGGGGTAAGGCTTGTATTCTTGTCTGCGCACAATG
CTCACCGCGACAGCAAACAAATGTCTAACCAGTACGACGACGTTTTCTCC
TCTTTCTTTTATACCCGCGGCAGCCTCCTCTAGTTTCATGACTGACGCCA
GATTCCCAGAAGGTCGAAAGTTGTTGGCCTTGTACCCCGTGGTTCTTTTC
TATCTCTCTCTCGCGTGGATTGTGCTAATTGGTTTCCAACGTGGATCTGT
CCCACATGCAGCCGTCGCGGAAGGAACTCTCCCGAGTAATGGAACTGCTG
CACCCGTTTCTGAAGGAAGTCGCATGCTTTTGCGAGATGATTATCTCAAT
GTACGAGATCGTGTGCTTTAA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:297156..298226- >Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000904_pilon:297156..298226- (Gracilaria gracilis GNS1m male)
ATGGCCGATTTAGCGCAACAATTCGGCGAGAATACCATCGAGGAACCCGT
ATCAGAAACCATTTTTCGCGATCTGCGACTCGTCGGACGACGCCTTCTGA
TGGTTATGATTCCATCAATAAGCTCCAGTGAGAAGCGTGCGGAACTTCGC
GATTGGGATCTGTGGGGCCCCTTCTTCCTGTGCATGTCCTTAGCTGTTAT
GCTCAGCATTACCGCACACGACCAAGCTTCAGTTGTTTTCTCAGTCATAT
TTGTTATAGTCTGGGTCGGTGCTGCTGTCATTACCGTCAATGGACAACTT
TTAGGCGGAAGACTCTCTTTCTTTCAAAGCGTTTGTCTTCTGGGATACTG
TATCTTTCCCATTCTTCTCAGTGCCGTTGCTTGTTGGATAATTAACTCAT
TTGTCAAGAACGACCTAGCAGTAATATTTCGCTTTGTGTCAGTTATTGTA
TCGCTTCTCTGGTCAATATGGGCCTCCTCTAGTTTCATGACTGACGCCAG
ATTCCCAGAAGGTCGAAAGTTGTTGGCCTTGTACCCCGTGGTTCTTTTCT
ATCTCTCTCTCGCGTGGATTGTGCTAATTGGTTTCCAACGTGGATCTGTC
CCACATGCAGCCGTCGCGGAAGGAACTCTCCCGAGTAATGGAACTGCTGC
ACCCGTTTCTGAAGGAAGTCGCATGCTTTTGCGAGATGATTATCTCAATG
TACGAGATCGTGTGCTTTAA back to top
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