Ggra10574.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10574.t1
Unique NameGgra10574.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:296595..297146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1341151.ASZU01000003_gene2346
Preferred namethiE
PFAMsTMP-TENI
Max annot lvl91061|Bacilli
KEGG rclassRC00224,RC03255,RC03397
KEGG koko:K00788
KEGG ReactionR03223,R10712
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
GOsGO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.82e-16
EggNOG OGsCOG0352@1|root,COG0352@2|Bacteria,1V3ZR@1239|Firmicutes,4HH1E@91061|Bacilli,27BS2@186824|Thermoactinomycetaceae
EC2.5.1.3
DescriptionThiamine monophosphate synthase
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10574Ggra10574Gracilaria gracilis GNS1m malegenetig00000904_pilon 296595..297146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10574.t1.start1Ggra10574.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 296595..296597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10574.t1.CDS1Ggra10574.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 296595..297146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10574.t1.exon1Ggra10574.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 296595..297146 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10574.t1.stop1Ggra10574.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 297144..297146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10574.t1Ggra10574.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 296595..297146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=184bp
MNSTPSQVKRLIRALLTGGVPAPKIAVNGMNPNEVMAVNCRLGVHIKEKD
ILKLLPVAKEVMPPSGIIGCAVHSMQAAKQVVGIHEPSYLQVGTMYPTQS
HPGKIPEGPGLVAQIRNVVGSTTLIGVGGIHEENIVSVFEHGADGIAVIT
QLSKAHDPQTKAASLLKLCEAAYEAKGRGQGHK*
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spliced messenger RNA

>Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000904_pilon:296595..297146+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGTACCCCATCGCAAGTAAAACGGCTGATCCGAGCCCTCCTGAC
TGGAGGCGTCCCTGCACCAAAAATAGCGGTAAACGGTATGAATCCAAACG
AGGTAATGGCTGTTAACTGCCGTCTCGGAGTCCATATCAAAGAAAAGGAT
ATTCTAAAGCTTCTCCCCGTAGCAAAAGAGGTTATGCCACCGAGTGGTAT
CATTGGATGTGCCGTTCATTCAATGCAGGCAGCAAAACAAGTGGTAGGTA
TTCATGAACCATCTTACCTTCAGGTTGGTACCATGTACCCCACCCAAAGC
CACCCTGGAAAGATACCTGAAGGACCTGGACTTGTAGCACAGATTCGAAA
TGTCGTTGGATCCACGACGCTTATCGGAGTTGGCGGTATACATGAAGAAA
ACATAGTCTCGGTCTTCGAACATGGTGCAGATGGAATCGCGGTCATCACC
CAACTTTCCAAAGCCCATGACCCACAAACGAAAGCGGCTTCGCTCTTAAA
ATTGTGCGAAGCTGCCTACGAAGCCAAGGGGAGAGGACAAGGTCACAAAT
GA
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protein sequence of Ggra10574.t1

>Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MNSTPSQVKRLIRALLTGGVPAPKIAVNGMNPNEVMAVNCRLGVHIKEKD
ILKLLPVAKEVMPPSGIIGCAVHSMQAAKQVVGIHEPSYLQVGTMYPTQS
HPGKIPEGPGLVAQIRNVVGSTTLIGVGGIHEENIVSVFEHGADGIAVIT
QLSKAHDPQTKAASLLKLCEAAYEAKGRGQGHK*
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mRNA from alignment at tig00000904_pilon:296595..297146+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000904_pilon:296595..297146+ (Gracilaria gracilis GNS1m male)
ATGAACAGTACCCCATCGCAAGTAAAACGGCTGATCCGAGCCCTCCTGAC
TGGAGGCGTCCCTGCACCAAAAATAGCGGTAAACGGTATGAATCCAAACG
AGGTAATGGCTGTTAACTGCCGTCTCGGAGTCCATATCAAAGAAAAGGAT
ATTCTAAAGCTTCTCCCCGTAGCAAAAGAGGTTATGCCACCGAGTGGTAT
CATTGGATGTGCCGTTCATTCAATGCAGGCAGCAAAACAAGTGGTAGGTA
TTCATGAACCATCTTACCTTCAGGTTGGTACCATGTACCCCACCCAAAGC
CACCCTGGAAAGATACCTGAAGGACCTGGACTTGTAGCACAGATTCGAAA
TGTCGTTGGATCCACGACGCTTATCGGAGTTGGCGGTATACATGAAGAAA
ACATAGTCTCGGTCTTCGAACATGGTGCAGATGGAATCGCGGTCATCACC
CAACTTTCCAAAGCCCATGACCCACAAACGAAAGCGGCTTCGCTCTTAAA
ATTGTGCGAAGCTGCCTACGAAGCCAAGGGGAGAGGACAAGGTCACAAAT
GA
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Coding sequence (CDS) from alignment at tig00000904_pilon:296595..297146+

>Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00000904_pilon:296595..297146+ (Gracilaria gracilis GNS1m male)
ATGAACAGTACCCCATCGCAAGTAAAACGGCTGATCCGAGCCCTCCTGAC
TGGAGGCGTCCCTGCACCAAAAATAGCGGTAAACGGTATGAATCCAAACG
AGGTAATGGCTGTTAACTGCCGTCTCGGAGTCCATATCAAAGAAAAGGAT
ATTCTAAAGCTTCTCCCCGTAGCAAAAGAGGTTATGCCACCGAGTGGTAT
CATTGGATGTGCCGTTCATTCAATGCAGGCAGCAAAACAAGTGGTAGGTA
TTCATGAACCATCTTACCTTCAGGTTGGTACCATGTACCCCACCCAAAGC
CACCCTGGAAAGATACCTGAAGGACCTGGACTTGTAGCACAGATTCGAAA
TGTCGTTGGATCCACGACGCTTATCGGAGTTGGCGGTATACATGAAGAAA
ACATAGTCTCGGTCTTCGAACATGGTGCAGATGGAATCGCGGTCATCACC
CAACTTTCCAAAGCCCATGACCCACAAACGAAAGCGGCTTCGCTCTTAAA
ATTGTGCGAAGCTGCCTACGAAGCCAAGGGGAGAGGACAAGGTCACAAAT
GA
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