|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 1341151.ASZU01000003_gene2346 |
| Preferred name | thiE |
| PFAMs | TMP-TENI |
| Max annot lvl | 91061|Bacilli |
| KEGG rclass | RC00224,RC03255,RC03397 |
| KEGG ko | ko:K00788 |
| KEGG Reaction | R03223,R10712 |
| KEGG Pathway | ko00730,ko01100,map00730,map01100 |
| KEGG Module | M00127 |
| GOs | GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 |
| Evalue | 1.82e-16 |
| EggNOG OGs | COG0352@1|root,COG0352@2|Bacteria,1V3ZR@1239|Firmicutes,4HH1E@91061|Bacilli,27BS2@186824|Thermoactinomycetaceae |
| EC | 2.5.1.3 |
| Description | Thiamine monophosphate synthase |
| COG category | H |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10574.t1.start1 | Ggra10574.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 296595..296597 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10574.t1.stop1 | Ggra10574.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 297144..297146 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=184bp
MNSTPSQVKRLIRALLTGGVPAPKIAVNGMNPNEVMAVNCRLGVHIKEKD
ILKLLPVAKEVMPPSGIIGCAVHSMQAAKQVVGIHEPSYLQVGTMYPTQS
HPGKIPEGPGLVAQIRNVVGSTTLIGVGGIHEENIVSVFEHGADGIAVIT
QLSKAHDPQTKAASLLKLCEAAYEAKGRGQGHK* back to topspliced messenger RNA >Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000904_pilon:296595..297146+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAACAGTACCCCATCGCAAGTAAAACGGCTGATCCGAGCCCTCCTGAC
TGGAGGCGTCCCTGCACCAAAAATAGCGGTAAACGGTATGAATCCAAACG
AGGTAATGGCTGTTAACTGCCGTCTCGGAGTCCATATCAAAGAAAAGGAT
ATTCTAAAGCTTCTCCCCGTAGCAAAAGAGGTTATGCCACCGAGTGGTAT
CATTGGATGTGCCGTTCATTCAATGCAGGCAGCAAAACAAGTGGTAGGTA
TTCATGAACCATCTTACCTTCAGGTTGGTACCATGTACCCCACCCAAAGC
CACCCTGGAAAGATACCTGAAGGACCTGGACTTGTAGCACAGATTCGAAA
TGTCGTTGGATCCACGACGCTTATCGGAGTTGGCGGTATACATGAAGAAA
ACATAGTCTCGGTCTTCGAACATGGTGCAGATGGAATCGCGGTCATCACC
CAACTTTCCAAAGCCCATGACCCACAAACGAAAGCGGCTTCGCTCTTAAA
ATTGTGCGAAGCTGCCTACGAAGCCAAGGGGAGAGGACAAGGTCACAAAT
GA back to topprotein sequence of Ggra10574.t1 >Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MNSTPSQVKRLIRALLTGGVPAPKIAVNGMNPNEVMAVNCRLGVHIKEKD
ILKLLPVAKEVMPPSGIIGCAVHSMQAAKQVVGIHEPSYLQVGTMYPTQS
HPGKIPEGPGLVAQIRNVVGSTTLIGVGGIHEENIVSVFEHGADGIAVIT
QLSKAHDPQTKAASLLKLCEAAYEAKGRGQGHK* back to topmRNA from alignment at tig00000904_pilon:296595..297146+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000904_pilon:296595..297146+ (Gracilaria gracilis GNS1m male)
ATGAACAGTACCCCATCGCAAGTAAAACGGCTGATCCGAGCCCTCCTGAC
TGGAGGCGTCCCTGCACCAAAAATAGCGGTAAACGGTATGAATCCAAACG
AGGTAATGGCTGTTAACTGCCGTCTCGGAGTCCATATCAAAGAAAAGGAT
ATTCTAAAGCTTCTCCCCGTAGCAAAAGAGGTTATGCCACCGAGTGGTAT
CATTGGATGTGCCGTTCATTCAATGCAGGCAGCAAAACAAGTGGTAGGTA
TTCATGAACCATCTTACCTTCAGGTTGGTACCATGTACCCCACCCAAAGC
CACCCTGGAAAGATACCTGAAGGACCTGGACTTGTAGCACAGATTCGAAA
TGTCGTTGGATCCACGACGCTTATCGGAGTTGGCGGTATACATGAAGAAA
ACATAGTCTCGGTCTTCGAACATGGTGCAGATGGAATCGCGGTCATCACC
CAACTTTCCAAAGCCCATGACCCACAAACGAAAGCGGCTTCGCTCTTAAA
ATTGTGCGAAGCTGCCTACGAAGCCAAGGGGAGAGGACAAGGTCACAAAT
GA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:296595..297146+ >Ggra10574.t1 ID=Ggra10574.t1|Name=Ggra10574.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00000904_pilon:296595..297146+ (Gracilaria gracilis GNS1m male)
ATGAACAGTACCCCATCGCAAGTAAAACGGCTGATCCGAGCCCTCCTGAC
TGGAGGCGTCCCTGCACCAAAAATAGCGGTAAACGGTATGAATCCAAACG
AGGTAATGGCTGTTAACTGCCGTCTCGGAGTCCATATCAAAGAAAAGGAT
ATTCTAAAGCTTCTCCCCGTAGCAAAAGAGGTTATGCCACCGAGTGGTAT
CATTGGATGTGCCGTTCATTCAATGCAGGCAGCAAAACAAGTGGTAGGTA
TTCATGAACCATCTTACCTTCAGGTTGGTACCATGTACCCCACCCAAAGC
CACCCTGGAAAGATACCTGAAGGACCTGGACTTGTAGCACAGATTCGAAA
TGTCGTTGGATCCACGACGCTTATCGGAGTTGGCGGTATACATGAAGAAA
ACATAGTCTCGGTCTTCGAACATGGTGCAGATGGAATCGCGGTCATCACC
CAACTTTCCAAAGCCCATGACCCACAAACGAAAGCGGCTTCGCTCTTAAA
ATTGTGCGAAGCTGCCTACGAAGCCAAGGGGAGAGGACAAGGTCACAAAT
GA back to top
|