Ggra10547.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10547.t1
Unique NameGgra10547.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length488
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:157464..158927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC180CT
Preferred namePDI1
PFAMsThioredoxin,Thioredoxin_6
Max annot lvl2759|Eukaryota
KEGG koko:K01829,ko:K09580,ko:K09584
KEGG Pathwayko04141,map04141
GOsGO:0000003,GO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0004656,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005793,GO:0005886,GO:0006082,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006520,GO:0006575,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009628,GO:0009897,GO:0009966,GO:0009986,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010646,GO:0010941,GO:0012505,GO:0015035,GO:0015036,GO:0015037,GO:0016020,GO:0016043,GO:0016222,GO:0016491,GO:0016667,GO:0016671,GO:0016705,GO:0016706,GO:0016853,GO:0016860,GO:0016864,GO:0018126,GO:0018193,GO:0018208,GO:0018401,GO:0019153,GO:0019221,GO:0019471,GO:0019511,GO:0019538,GO:0019752,GO:0019798,GO:0019941,GO:0019953,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030163,GO:0030433,GO:0031543,GO:0031545,GO:0031974,GO:0032501,GO:0032991,GO:0033554,GO:0034097,GO:0034377,GO:0034378,GO:0034379,GO:0034975,GO:0034976,GO:0035722,GO:0035977,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0036507,GO:0036508,GO:0038155,GO:0042221,GO:0042981,GO:0043062,GO:0043067,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043632,GO:0043687,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0046596,GO:0046598,GO:0046982,GO:0046983,GO:0048518,GO:0048524,GO:0048583,GO:0050789,GO:0050792,GO:0050794,GO:0050839,GO:0050896,GO:0051082,GO:0051213,GO:0051603,GO:0051704,GO:0051716,GO:0055114,GO:0065003,GO:0065005,GO:0065007,GO:0070013,GO:0070482,GO:0070671,GO:0070887,GO:0071310,GO:0071345,GO:0071349,GO:0071453,GO:0071456,GO:0071704,GO:0071825,GO:0071827,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0097006,GO:0097466,GO:0098552,GO:0140096,GO:1900407,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901698,GO:1901700,GO:1902175,GO:1902494,GO:1902531,GO:1902882,GO:1903201,GO:1903900,GO:1903902,GO:1904382,GO:1904587,GO:1990204,GO:2001233,GO:2001242
Evalue8.1e-94
EggNOG OGsCOG0526@1|root,KOG0190@2759|Eukaryota
EC5.3.4.1
Descriptionintramolecular oxidoreductase activity, transposing S-S bonds
COG categoryCO
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10547Ggra10547Gracilaria gracilis GNS1m malegenetig00000904_pilon 157464..158927 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10547.t1.stop1Ggra10547.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 157464..157466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10547.t1.CDS1Ggra10547.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 157464..158927 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10547.t1.exon1Ggra10547.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 157464..158927 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10547.t1.start1Ggra10547.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 158925..158927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10547.t1Ggra10547.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 157464..158927 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10547.t1 ID=Ggra10547.t1|Name=Ggra10547.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=488bp
MVRPNFFAVLAALAVFFVAASAADDVLVGTKDNFESIIGAEELTLVKFFA
PWCGHCKKMAGDFKEAATELKGKAQLVDLDATVEKELAQKYGIRGFPTLK
LFSKGELVSDYKGGRTKDDIIKYVERSMLPSIVDCADSDALSTFTSENKG
KALYISVKADKLQAEYKKASMSLRDLLPDSIAFASVDDPALLADLAGKKV
EEDSIVLVRSDDSTDAYSGAPEELEAWIKTGSLPLFGELSRDTAAVYTEL
DTPIFLLFQDPEKKSEDVNDAVTEIAKSYRGSSSIAFAWINGVELKSFAE
HIGVADKDPSIAIYEFKSDQKYVFGEEYSKEALSAWVEKFVKGEITASKK
SEPIPETNDEPVKIVVGDSWADIVEDEEKDVLIEQYAPWCGHCKKLAPVL
DELAADLKEVSTLVIAKMDATLNDAPKEYKAQGFPTLHFFKAGSKVGVPY
ESGRAKEDFIKFFKENATHKEGIELKSEGTAEEKEEL*
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spliced messenger RNA

>Ggra10547.t1 ID=Ggra10547.t1|Name=Ggra10547.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00000904_pilon:157464..158927- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGACCTAATTTTTTCGCGGTATTGGCCGCTCTTGCTGTATTCTT
TGTCGCGGCGTCTGCAGCTGACGACGTCCTAGTCGGTACCAAGGACAACT
TTGAATCGATCATCGGTGCTGAGGAACTTACTCTCGTCAAGTTCTTTGCG
CCATGGTGCGGCCATTGCAAGAAGATGGCTGGGGACTTTAAAGAGGCTGC
CACCGAATTGAAGGGAAAGGCACAGCTTGTTGATCTTGATGCCACCGTCG
AGAAAGAACTTGCTCAGAAGTACGGTATTCGGGGCTTCCCCACTCTCAAG
CTCTTCTCCAAGGGTGAGCTAGTTTCTGACTACAAGGGAGGTCGTACCAA
GGACGATATTATCAAATACGTCGAACGTTCCATGCTCCCGTCCATCGTCG
ACTGTGCAGATTCCGATGCTCTGTCCACTTTCACATCCGAGAACAAGGGC
AAGGCTCTGTATATTTCCGTCAAGGCCGACAAGCTCCAGGCTGAGTACAA
GAAGGCCAGCATGTCTCTCCGCGACCTCTTGCCTGATTCCATTGCCTTTG
CCTCCGTGGATGATCCTGCTCTGCTTGCAGACCTGGCTGGAAAGAAGGTC
GAAGAAGATTCCATTGTTCTGGTTCGTAGTGACGATTCCACTGACGCTTA
CTCTGGTGCCCCTGAAGAGCTCGAGGCCTGGATCAAGACCGGCAGCCTTC
CGTTGTTCGGCGAACTCAGCCGCGATACTGCTGCCGTCTACACTGAGCTG
GACACACCCATCTTTCTTTTGTTCCAAGACCCGGAAAAGAAGAGCGAGGA
TGTTAACGATGCCGTCACAGAAATCGCAAAGAGTTATCGGGGAAGCAGCT
CTATCGCCTTCGCTTGGATCAATGGAGTAGAGCTTAAGAGCTTTGCGGAA
CATATCGGTGTCGCCGACAAGGATCCGTCGATTGCTATCTACGAATTTAA
GAGCGACCAGAAGTATGTCTTCGGTGAAGAGTACTCCAAGGAGGCACTCT
CAGCTTGGGTTGAGAAGTTTGTCAAGGGAGAGATTACTGCCAGCAAGAAA
TCCGAGCCCATCCCTGAGACCAACGACGAGCCAGTTAAGATCGTCGTCGG
GGACTCATGGGCGGATATTGTTGAAGACGAGGAGAAAGATGTTCTCATTG
AGCAGTACGCCCCGTGGTGTGGCCACTGCAAGAAGCTCGCCCCTGTGCTT
GACGAACTCGCGGCAGATCTCAAGGAGGTTTCCACCTTGGTCATCGCCAA
GATGGATGCCACTCTAAATGATGCCCCTAAGGAATACAAGGCCCAAGGGT
TCCCTACTCTTCACTTTTTCAAGGCCGGATCTAAGGTAGGTGTCCCGTAC
GAGTCCGGCCGTGCAAAGGAAGATTTCATCAAGTTCTTCAAGGAAAATGC
CACTCATAAGGAAGGCATTGAGTTGAAATCGGAAGGTACAGCCGAAGAGA
AGGAAGAGTTGTAA
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protein sequence of Ggra10547.t1

>Ggra10547.t1 ID=Ggra10547.t1|Name=Ggra10547.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=488bp
MVRPNFFAVLAALAVFFVAASAADDVLVGTKDNFESIIGAEELTLVKFFA
PWCGHCKKMAGDFKEAATELKGKAQLVDLDATVEKELAQKYGIRGFPTLK
LFSKGELVSDYKGGRTKDDIIKYVERSMLPSIVDCADSDALSTFTSENKG
KALYISVKADKLQAEYKKASMSLRDLLPDSIAFASVDDPALLADLAGKKV
EEDSIVLVRSDDSTDAYSGAPEELEAWIKTGSLPLFGELSRDTAAVYTEL
DTPIFLLFQDPEKKSEDVNDAVTEIAKSYRGSSSIAFAWINGVELKSFAE
HIGVADKDPSIAIYEFKSDQKYVFGEEYSKEALSAWVEKFVKGEITASKK
SEPIPETNDEPVKIVVGDSWADIVEDEEKDVLIEQYAPWCGHCKKLAPVL
DELAADLKEVSTLVIAKMDATLNDAPKEYKAQGFPTLHFFKAGSKVGVPY
ESGRAKEDFIKFFKENATHKEGIELKSEGTAEEKEEL*
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mRNA from alignment at tig00000904_pilon:157464..158927-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10547.t1 ID=Ggra10547.t1|Name=Ggra10547.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00000904_pilon:157464..158927- (Gracilaria gracilis GNS1m male)
ATGGTGCGACCTAATTTTTTCGCGGTATTGGCCGCTCTTGCTGTATTCTT
TGTCGCGGCGTCTGCAGCTGACGACGTCCTAGTCGGTACCAAGGACAACT
TTGAATCGATCATCGGTGCTGAGGAACTTACTCTCGTCAAGTTCTTTGCG
CCATGGTGCGGCCATTGCAAGAAGATGGCTGGGGACTTTAAAGAGGCTGC
CACCGAATTGAAGGGAAAGGCACAGCTTGTTGATCTTGATGCCACCGTCG
AGAAAGAACTTGCTCAGAAGTACGGTATTCGGGGCTTCCCCACTCTCAAG
CTCTTCTCCAAGGGTGAGCTAGTTTCTGACTACAAGGGAGGTCGTACCAA
GGACGATATTATCAAATACGTCGAACGTTCCATGCTCCCGTCCATCGTCG
ACTGTGCAGATTCCGATGCTCTGTCCACTTTCACATCCGAGAACAAGGGC
AAGGCTCTGTATATTTCCGTCAAGGCCGACAAGCTCCAGGCTGAGTACAA
GAAGGCCAGCATGTCTCTCCGCGACCTCTTGCCTGATTCCATTGCCTTTG
CCTCCGTGGATGATCCTGCTCTGCTTGCAGACCTGGCTGGAAAGAAGGTC
GAAGAAGATTCCATTGTTCTGGTTCGTAGTGACGATTCCACTGACGCTTA
CTCTGGTGCCCCTGAAGAGCTCGAGGCCTGGATCAAGACCGGCAGCCTTC
CGTTGTTCGGCGAACTCAGCCGCGATACTGCTGCCGTCTACACTGAGCTG
GACACACCCATCTTTCTTTTGTTCCAAGACCCGGAAAAGAAGAGCGAGGA
TGTTAACGATGCCGTCACAGAAATCGCAAAGAGTTATCGGGGAAGCAGCT
CTATCGCCTTCGCTTGGATCAATGGAGTAGAGCTTAAGAGCTTTGCGGAA
CATATCGGTGTCGCCGACAAGGATCCGTCGATTGCTATCTACGAATTTAA
GAGCGACCAGAAGTATGTCTTCGGTGAAGAGTACTCCAAGGAGGCACTCT
CAGCTTGGGTTGAGAAGTTTGTCAAGGGAGAGATTACTGCCAGCAAGAAA
TCCGAGCCCATCCCTGAGACCAACGACGAGCCAGTTAAGATCGTCGTCGG
GGACTCATGGGCGGATATTGTTGAAGACGAGGAGAAAGATGTTCTCATTG
AGCAGTACGCCCCGTGGTGTGGCCACTGCAAGAAGCTCGCCCCTGTGCTT
GACGAACTCGCGGCAGATCTCAAGGAGGTTTCCACCTTGGTCATCGCCAA
GATGGATGCCACTCTAAATGATGCCCCTAAGGAATACAAGGCCCAAGGGT
TCCCTACTCTTCACTTTTTCAAGGCCGGATCTAAGGTAGGTGTCCCGTAC
GAGTCCGGCCGTGCAAAGGAAGATTTCATCAAGTTCTTCAAGGAAAATGC
CACTCATAAGGAAGGCATTGAGTTGAAATCGGAAGGTACAGCCGAAGAGA
AGGAAGAGTTGTAA
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Coding sequence (CDS) from alignment at tig00000904_pilon:157464..158927-

>Ggra10547.t1 ID=Ggra10547.t1|Name=Ggra10547.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1464bp|location=Sequence derived from alignment at tig00000904_pilon:157464..158927- (Gracilaria gracilis GNS1m male)
ATGGTGCGACCTAATTTTTTCGCGGTATTGGCCGCTCTTGCTGTATTCTT
TGTCGCGGCGTCTGCAGCTGACGACGTCCTAGTCGGTACCAAGGACAACT
TTGAATCGATCATCGGTGCTGAGGAACTTACTCTCGTCAAGTTCTTTGCG
CCATGGTGCGGCCATTGCAAGAAGATGGCTGGGGACTTTAAAGAGGCTGC
CACCGAATTGAAGGGAAAGGCACAGCTTGTTGATCTTGATGCCACCGTCG
AGAAAGAACTTGCTCAGAAGTACGGTATTCGGGGCTTCCCCACTCTCAAG
CTCTTCTCCAAGGGTGAGCTAGTTTCTGACTACAAGGGAGGTCGTACCAA
GGACGATATTATCAAATACGTCGAACGTTCCATGCTCCCGTCCATCGTCG
ACTGTGCAGATTCCGATGCTCTGTCCACTTTCACATCCGAGAACAAGGGC
AAGGCTCTGTATATTTCCGTCAAGGCCGACAAGCTCCAGGCTGAGTACAA
GAAGGCCAGCATGTCTCTCCGCGACCTCTTGCCTGATTCCATTGCCTTTG
CCTCCGTGGATGATCCTGCTCTGCTTGCAGACCTGGCTGGAAAGAAGGTC
GAAGAAGATTCCATTGTTCTGGTTCGTAGTGACGATTCCACTGACGCTTA
CTCTGGTGCCCCTGAAGAGCTCGAGGCCTGGATCAAGACCGGCAGCCTTC
CGTTGTTCGGCGAACTCAGCCGCGATACTGCTGCCGTCTACACTGAGCTG
GACACACCCATCTTTCTTTTGTTCCAAGACCCGGAAAAGAAGAGCGAGGA
TGTTAACGATGCCGTCACAGAAATCGCAAAGAGTTATCGGGGAAGCAGCT
CTATCGCCTTCGCTTGGATCAATGGAGTAGAGCTTAAGAGCTTTGCGGAA
CATATCGGTGTCGCCGACAAGGATCCGTCGATTGCTATCTACGAATTTAA
GAGCGACCAGAAGTATGTCTTCGGTGAAGAGTACTCCAAGGAGGCACTCT
CAGCTTGGGTTGAGAAGTTTGTCAAGGGAGAGATTACTGCCAGCAAGAAA
TCCGAGCCCATCCCTGAGACCAACGACGAGCCAGTTAAGATCGTCGTCGG
GGACTCATGGGCGGATATTGTTGAAGACGAGGAGAAAGATGTTCTCATTG
AGCAGTACGCCCCGTGGTGTGGCCACTGCAAGAAGCTCGCCCCTGTGCTT
GACGAACTCGCGGCAGATCTCAAGGAGGTTTCCACCTTGGTCATCGCCAA
GATGGATGCCACTCTAAATGATGCCCCTAAGGAATACAAGGCCCAAGGGT
TCCCTACTCTTCACTTTTTCAAGGCCGGATCTAAGGTAGGTGTCCCGTAC
GAGTCCGGCCGTGCAAAGGAAGATTTCATCAAGTTCTTCAAGGAAAATGC
CACTCATAAGGAAGGCATTGAGTTGAAATCGGAAGGTACAGCCGAAGAGA
AGGAAGAGTTGTAA
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