Ggra10541.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10541.t1
Unique NameGgra10541.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:62380..62830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10541Ggra10541Gracilaria gracilis GNS1m malegenetig00000904_pilon 62380..62830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10541.t1Ggra10541.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 62380..62830 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10541.t1.stop1Ggra10541.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 62380..62382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10541.t1.CDS1Ggra10541.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 62380..62636 -
Ggra10541.t1.CDS2Ggra10541.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 62725..62830 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10541.t1.exon1Ggra10541.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 62380..62636 -
Ggra10541.t1.exon2Ggra10541.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 62725..62830 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10541.t1.intron1Ggra10541.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 62637..62724 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10541.t1.start1Ggra10541.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 62828..62830 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10541.t1 ID=Ggra10541.t1|Name=Ggra10541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=121bp
MEGVSPEQKPSLKVVQLATNELASAIHSQFQTTAKVAAIDVDTINAMNSS
TETFYAGMNERINALAVAADQVQCHAEDAKKFALDMAALLQKARRLEALV
DRLDEYTTRQEDALSRKLPR*
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spliced messenger RNA

>Ggra10541.t1 ID=Ggra10541.t1|Name=Ggra10541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp|location=Sequence derived from alignment at tig00000904_pilon:62380..62830- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGTGTCTCACCAGAACAAAAACCCAGCCTAAAAGTTGTTCAATT
GGCAACAAATGAATTGGCGAGTGCCATACACTCGCAGTTTCAGACTACTG
CAAAAGTTGCCGCAATCGATGTGGACACTATCAACGCAATGAATTCATCC
ACAGAAACGTTTTATGCAGGGATGAATGAGAGAATCAACGCCCTAGCAGT
GGCTGCAGATCAGGTTCAATGTCATGCCGAAGATGCGAAGAAGTTTGCTT
TGGACATGGCCGCGCTGCTACAAAAGGCAAGAAGGTTAGAGGCTCTGGTA
GATCGCCTGGACGAGTACACAACAAGACAAGAAGATGCTCTTTCACGCAA
GCTACCTCGGTAG
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protein sequence of Ggra10541.t1

>Ggra10541.t1 ID=Ggra10541.t1|Name=Ggra10541.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=121bp
MEGVSPEQKPSLKVVQLATNELASAIHSQFQTTAKVAAIDVDTINAMNSS
TETFYAGMNERINALAVAADQVQCHAEDAKKFALDMAALLQKARRLEALV
DRLDEYTTRQEDALSRKLPR*
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mRNA from alignment at tig00000904_pilon:62380..62830-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10541.t1 ID=Ggra10541.t1|Name=Ggra10541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp|location=Sequence derived from alignment at tig00000904_pilon:62380..62830- (Gracilaria gracilis GNS1m male)
ATGGAAGGTGTCTCACCAGAACAAAAACCCAGCCTAAAAGTTGTTCAATT
GGCAACAAATGAATTGGCGAGTGCCATACACTCGCAGTTTCAGACTACTG
CAAAAGGTAAGACCGATGTATATCCCGTTTATTTGACAGTATGCCGACCG
AGAAGATTGATGACTTATTAGTTTTCTCCATATCATGACAAAAGTTGCCG
CAATCGATGTGGACACTATCAACGCAATGAATTCATCCACAGAAACGTTT
TATGCAGGGATGAATGAGAGAATCAACGCCCTAGCAGTGGCTGCAGATCA
GGTTCAATGTCATGCCGAAGATGCGAAGAAGTTTGCTTTGGACATGGCCG
CGCTGCTACAAAAGGCAAGAAGGTTAGAGGCTCTGGTAGATCGCCTGGAC
GAGTACACAACAAGACAAGAAGATGCTCTTTCACGCAAGCTACCTCGGTA
G
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Coding sequence (CDS) from alignment at tig00000904_pilon:62380..62830-

>Ggra10541.t1 ID=Ggra10541.t1|Name=Ggra10541.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=363bp|location=Sequence derived from alignment at tig00000904_pilon:62380..62830- (Gracilaria gracilis GNS1m male)
ATGGAAGGTGTCTCACCAGAACAAAAACCCAGCCTAAAAGTTGTTCAATT
GGCAACAAATGAATTGGCGAGTGCCATACACTCGCAGTTTCAGACTACTG
CAAAAGTTGCCGCAATCGATGTGGACACTATCAACGCAATGAATTCATCC
ACAGAAACGTTTTATGCAGGGATGAATGAGAGAATCAACGCCCTAGCAGT
GGCTGCAGATCAGGTTCAATGTCATGCCGAAGATGCGAAGAAGTTTGCTT
TGGACATGGCCGCGCTGCTACAAAAGGCAAGAAGGTTAGAGGCTCTGGTA
GATCGCCTGGACGAGTACACAACAAGACAAGAAGATGCTCTTTCACGCAA
GCTACCTCGGTAG
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