Ggra10532.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10532.t1
Unique NameGgra10532.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:42872..43936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T002243
PFAMsCyclin_C,Cyclin_N
Max annot lvl121069|Pythiales
Evalue1.64e-11
EggNOG OGsCOG5024@1|root,KOG0654@2759|Eukaryota,1MFK9@121069|Pythiales
DescriptionCyclin_C
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10532Ggra10532Gracilaria gracilis GNS1m malegenetig00000904_pilon 42872..43936 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10532.t1.stop1Ggra10532.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 42872..42874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10532.t1.CDS1Ggra10532.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 42872..43936 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10532.t1.exon1Ggra10532.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 42872..43936 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10532.t1.start1Ggra10532.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 43934..43936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10532.t1Ggra10532.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 42872..43936 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10532.t1 ID=Ggra10532.t1|Name=Ggra10532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=355bp
MSKPRSILHRTTDEEYAFRMMLNCSSGQYSEQLELLRRLNSSAHKMYEAR
RPFLIEWLAEVCLHFGIRSLTLHIAVRLMDVFVFSIPWSSSLAPLCALTC
LYTASKYDKTDDSIPPISEWERVGETGCNAQNIRSMEVILLSALQWNLGY
KTPVHYLLEYVSVLHRLLAVGYDDGDNSSDSKEFHDLWGHGPFMKGRADA
CDESDDDISDLSDEDCEREGNHQTGHSFDLSSPDSFPFIETACAEFSEKK
LCSQPKHQNSFHSDLFKSYRVAADLLDISLLHPLIYLSHAPQTLAASALL
IGSQITGGGLLPVDVNVLCAGKDQDVELCTSALTDIISSLSLCDEGDHEN
QGSS*
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spliced messenger RNA

>Ggra10532.t1 ID=Ggra10532.t1|Name=Ggra10532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000904_pilon:42872..43936- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAACCACGATCTATACTGCATCGTACCACTGATGAGGAGTACGC
GTTCCGAATGATGTTGAACTGTTCGTCTGGGCAGTATTCTGAGCAGCTCG
AACTTCTGCGACGACTGAATAGTTCTGCTCACAAGATGTACGAAGCGCGA
CGTCCTTTTCTCATAGAGTGGCTTGCGGAAGTCTGCTTGCATTTCGGGAT
TCGATCACTCACGTTACACATCGCTGTTCGGCTGATGGATGTGTTTGTTT
TTAGTATACCATGGAGTTCTTCTTTAGCTCCTTTATGTGCGCTTACATGT
CTTTATACTGCTTCCAAGTATGATAAGACTGACGACTCCATTCCCCCCAT
TAGCGAATGGGAGCGTGTCGGCGAGACAGGGTGTAATGCGCAGAATATCC
GAAGTATGGAAGTTATCCTTCTCTCTGCTCTGCAGTGGAACCTTGGTTAT
AAGACACCTGTGCATTATTTGCTGGAATATGTGTCTGTTCTCCACAGGCT
CCTGGCCGTAGGTTATGATGACGGTGATAATTCTAGCGACTCAAAAGAGT
TCCATGACTTGTGGGGCCATGGACCCTTCATGAAAGGCCGTGCTGATGCG
TGCGATGAGAGCGACGATGACATTAGCGACCTTTCTGACGAAGACTGCGA
GCGTGAAGGGAATCATCAAACAGGGCACAGTTTTGATTTGTCTTCCCCCG
ACAGTTTTCCTTTCATTGAAACTGCATGCGCAGAATTCTCTGAGAAGAAG
CTTTGCTCGCAGCCCAAGCATCAGAATTCTTTCCACTCTGACTTGTTCAA
GAGTTATCGTGTAGCGGCAGATCTCCTGGATATTTCATTGCTTCACCCCT
TAATTTACCTGTCTCACGCTCCGCAAACCCTTGCTGCCAGCGCTTTACTC
ATTGGGTCCCAAATCACTGGGGGAGGTTTATTACCGGTGGACGTCAATGT
TTTATGTGCCGGTAAGGACCAAGATGTGGAGTTGTGCACTTCTGCGTTGA
CGGATATTATAAGCAGCTTGTCTCTCTGTGATGAAGGGGACCACGAGAAC
CAAGGAAGCTCCTGA
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protein sequence of Ggra10532.t1

>Ggra10532.t1 ID=Ggra10532.t1|Name=Ggra10532.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MSKPRSILHRTTDEEYAFRMMLNCSSGQYSEQLELLRRLNSSAHKMYEAR
RPFLIEWLAEVCLHFGIRSLTLHIAVRLMDVFVFSIPWSSSLAPLCALTC
LYTASKYDKTDDSIPPISEWERVGETGCNAQNIRSMEVILLSALQWNLGY
KTPVHYLLEYVSVLHRLLAVGYDDGDNSSDSKEFHDLWGHGPFMKGRADA
CDESDDDISDLSDEDCEREGNHQTGHSFDLSSPDSFPFIETACAEFSEKK
LCSQPKHQNSFHSDLFKSYRVAADLLDISLLHPLIYLSHAPQTLAASALL
IGSQITGGGLLPVDVNVLCAGKDQDVELCTSALTDIISSLSLCDEGDHEN
QGSS*
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mRNA from alignment at tig00000904_pilon:42872..43936-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10532.t1 ID=Ggra10532.t1|Name=Ggra10532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000904_pilon:42872..43936- (Gracilaria gracilis GNS1m male)
ATGTCCAAACCACGATCTATACTGCATCGTACCACTGATGAGGAGTACGC
GTTCCGAATGATGTTGAACTGTTCGTCTGGGCAGTATTCTGAGCAGCTCG
AACTTCTGCGACGACTGAATAGTTCTGCTCACAAGATGTACGAAGCGCGA
CGTCCTTTTCTCATAGAGTGGCTTGCGGAAGTCTGCTTGCATTTCGGGAT
TCGATCACTCACGTTACACATCGCTGTTCGGCTGATGGATGTGTTTGTTT
TTAGTATACCATGGAGTTCTTCTTTAGCTCCTTTATGTGCGCTTACATGT
CTTTATACTGCTTCCAAGTATGATAAGACTGACGACTCCATTCCCCCCAT
TAGCGAATGGGAGCGTGTCGGCGAGACAGGGTGTAATGCGCAGAATATCC
GAAGTATGGAAGTTATCCTTCTCTCTGCTCTGCAGTGGAACCTTGGTTAT
AAGACACCTGTGCATTATTTGCTGGAATATGTGTCTGTTCTCCACAGGCT
CCTGGCCGTAGGTTATGATGACGGTGATAATTCTAGCGACTCAAAAGAGT
TCCATGACTTGTGGGGCCATGGACCCTTCATGAAAGGCCGTGCTGATGCG
TGCGATGAGAGCGACGATGACATTAGCGACCTTTCTGACGAAGACTGCGA
GCGTGAAGGGAATCATCAAACAGGGCACAGTTTTGATTTGTCTTCCCCCG
ACAGTTTTCCTTTCATTGAAACTGCATGCGCAGAATTCTCTGAGAAGAAG
CTTTGCTCGCAGCCCAAGCATCAGAATTCTTTCCACTCTGACTTGTTCAA
GAGTTATCGTGTAGCGGCAGATCTCCTGGATATTTCATTGCTTCACCCCT
TAATTTACCTGTCTCACGCTCCGCAAACCCTTGCTGCCAGCGCTTTACTC
ATTGGGTCCCAAATCACTGGGGGAGGTTTATTACCGGTGGACGTCAATGT
TTTATGTGCCGGTAAGGACCAAGATGTGGAGTTGTGCACTTCTGCGTTGA
CGGATATTATAAGCAGCTTGTCTCTCTGTGATGAAGGGGACCACGAGAAC
CAAGGAAGCTCCTGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:42872..43936-

>Ggra10532.t1 ID=Ggra10532.t1|Name=Ggra10532.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000904_pilon:42872..43936- (Gracilaria gracilis GNS1m male)
ATGTCCAAACCACGATCTATACTGCATCGTACCACTGATGAGGAGTACGC
GTTCCGAATGATGTTGAACTGTTCGTCTGGGCAGTATTCTGAGCAGCTCG
AACTTCTGCGACGACTGAATAGTTCTGCTCACAAGATGTACGAAGCGCGA
CGTCCTTTTCTCATAGAGTGGCTTGCGGAAGTCTGCTTGCATTTCGGGAT
TCGATCACTCACGTTACACATCGCTGTTCGGCTGATGGATGTGTTTGTTT
TTAGTATACCATGGAGTTCTTCTTTAGCTCCTTTATGTGCGCTTACATGT
CTTTATACTGCTTCCAAGTATGATAAGACTGACGACTCCATTCCCCCCAT
TAGCGAATGGGAGCGTGTCGGCGAGACAGGGTGTAATGCGCAGAATATCC
GAAGTATGGAAGTTATCCTTCTCTCTGCTCTGCAGTGGAACCTTGGTTAT
AAGACACCTGTGCATTATTTGCTGGAATATGTGTCTGTTCTCCACAGGCT
CCTGGCCGTAGGTTATGATGACGGTGATAATTCTAGCGACTCAAAAGAGT
TCCATGACTTGTGGGGCCATGGACCCTTCATGAAAGGCCGTGCTGATGCG
TGCGATGAGAGCGACGATGACATTAGCGACCTTTCTGACGAAGACTGCGA
GCGTGAAGGGAATCATCAAACAGGGCACAGTTTTGATTTGTCTTCCCCCG
ACAGTTTTCCTTTCATTGAAACTGCATGCGCAGAATTCTCTGAGAAGAAG
CTTTGCTCGCAGCCCAAGCATCAGAATTCTTTCCACTCTGACTTGTTCAA
GAGTTATCGTGTAGCGGCAGATCTCCTGGATATTTCATTGCTTCACCCCT
TAATTTACCTGTCTCACGCTCCGCAAACCCTTGCTGCCAGCGCTTTACTC
ATTGGGTCCCAAATCACTGGGGGAGGTTTATTACCGGTGGACGTCAATGT
TTTATGTGCCGGTAAGGACCAAGATGTGGAGTTGTGCACTTCTGCGTTGA
CGGATATTATAAGCAGCTTGTCTCTCTGTGATGAAGGGGACCACGAGAAC
CAAGGAAGCTCCTGA
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