Ggra10531.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10531.t1
Unique NameGgra10531.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:41052..42347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704309.1
Preferred namePDHA1
PFAMsE1_dh
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161,ko:K05694
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04520,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04520,map04922,map05230
KEGG ModuleM00307
GOsGO:0003674,GO:0003824,GO:0004738,GO:0004739,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006091,GO:0006099,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007124,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009060,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009295,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016049,GO:0016491,GO:0016620,GO:0016624,GO:0016903,GO:0016999,GO:0017144,GO:0018130,GO:0019362,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030447,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034603,GO:0034604,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0040007,GO:0042221,GO:0042645,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0045333,GO:0046390,GO:0046483,GO:0046496,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0070783,GO:0071616,GO:0071704,GO:0072350,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0098798,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
Evalue4.1e-155
EggNOG OGsCOG0462@1|root,KOG0225@2759|Eukaryota
EC1.2.4.1,3.1.3.48
Descriptionpyruvate dehydrogenase (acetyl-transferring) activity
COG categoryC
BiGG ReactioniMM904.YER178W,iND750.YER178W
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01009,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10531Ggra10531Gracilaria gracilis GNS1m malegenetig00000904_pilon 41052..42347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10531.t1Ggra10531.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 41052..42347 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10531.t1.start1Ggra10531.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 41052..41054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10531.t1.CDS1Ggra10531.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 41052..41111 +
Ggra10531.t1.CDS2Ggra10531.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 41262..42347 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10531.t1.exon1Ggra10531.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 41052..41111 +
Ggra10531.t1.exon2Ggra10531.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 41262..42347 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10531.t1.intron1Ggra10531.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 41112..41261 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10531.t1.stop1Ggra10531.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 42345..42347 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10531.t1 ID=Ggra10531.t1|Name=Ggra10531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp
MAARHGLRSLAVRPRPLSTQSQQAPAEVVFDITPFATHKIDAPEPKAVSN
ADELHDFFRIMYRMRRMEMESDALYTRQMVRGFCHLYNGQEAVAVGIEAA
ITYDDCLITAYRNHCQQLARGDTVESILSELTGRVNGCSKGKGGSMHLYK
PQNNYYGGNGIVGAQGPLGAGLAFAQKYNNTGKVAITMFGDGAANQGQIF
EVINMSALWNLPTVFVCENNRYGMGTSTKRSAKSEDFYTRGDYIPGIRVD
GMDVLCVREGMKYATDYARENGPIYVEMDTYRYKGHSISDQGLGYRSIDE
INVVKASRDPIDRVKARLIECGWATPQELKAEEKRIRKEVDAAVKVAETA
PHPPLSDLFSDVYVGDPGFIRGTLPSNGNNS*
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spliced messenger RNA

>Ggra10531.t1 ID=Ggra10531.t1|Name=Ggra10531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000904_pilon:41052..42347+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGCGCCACGGCCTGAGAAGCTTGGCTGTTCGGCCGCGCCCCCT
TTCTACACAGTCACAACAGGCTCCAGCAGAAGTCGTATTCGATATCACCC
CGTTTGCCACTCACAAGATTGACGCTCCGGAACCCAAGGCTGTTTCCAAT
GCCGATGAACTTCATGACTTTTTCCGTATCATGTATCGCATGCGCCGCAT
GGAGATGGAATCCGATGCGCTCTACACCCGACAAATGGTCCGTGGCTTCT
GTCATCTGTACAACGGACAGGAAGCTGTTGCTGTTGGTATCGAGGCCGCT
ATTACATATGACGACTGCCTTATCACCGCGTACCGCAATCATTGCCAACA
ACTTGCGCGTGGTGACACCGTCGAATCCATACTCTCGGAGCTCACAGGAA
GGGTGAACGGCTGTTCAAAGGGTAAAGGTGGTTCTATGCACTTGTATAAA
CCTCAGAATAACTATTATGGTGGAAATGGTATTGTTGGCGCTCAAGGCCC
CCTTGGAGCCGGTCTTGCCTTTGCCCAGAAATACAACAACACCGGAAAGG
TTGCCATCACCATGTTCGGCGATGGTGCAGCCAATCAAGGACAAATCTTT
GAAGTAATCAATATGTCCGCTTTGTGGAATCTGCCAACTGTGTTTGTATG
TGAGAATAACCGTTACGGAATGGGAACATCCACGAAGAGAAGCGCAAAAT
CAGAGGACTTTTATACAAGAGGCGATTACATTCCGGGCATCAGAGTGGAT
GGTATGGATGTTCTTTGCGTGCGCGAAGGCATGAAGTACGCGACTGACTA
TGCTCGTGAGAACGGACCAATATATGTTGAGATGGACACCTATCGCTATA
AGGGGCATAGTATTTCCGATCAAGGTCTCGGTTACCGTTCTATCGACGAG
ATTAACGTTGTGAAAGCCAGCCGCGACCCTATTGACAGGGTGAAGGCTCG
TTTGATTGAATGCGGTTGGGCAACACCTCAAGAGTTGAAGGCGGAAGAGA
AGAGGATCCGAAAGGAAGTTGATGCAGCTGTCAAAGTCGCCGAGACTGCT
CCCCACCCCCCGTTATCAGACTTGTTTTCGGATGTATATGTCGGTGATCC
GGGTTTCATTCGCGGTACCTTACCGTCTAATGGGAATAATTCGTAA
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protein sequence of Ggra10531.t1

>Ggra10531.t1 ID=Ggra10531.t1|Name=Ggra10531.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MAARHGLRSLAVRPRPLSTQSQQAPAEVVFDITPFATHKIDAPEPKAVSN
ADELHDFFRIMYRMRRMEMESDALYTRQMVRGFCHLYNGQEAVAVGIEAA
ITYDDCLITAYRNHCQQLARGDTVESILSELTGRVNGCSKGKGGSMHLYK
PQNNYYGGNGIVGAQGPLGAGLAFAQKYNNTGKVAITMFGDGAANQGQIF
EVINMSALWNLPTVFVCENNRYGMGTSTKRSAKSEDFYTRGDYIPGIRVD
GMDVLCVREGMKYATDYARENGPIYVEMDTYRYKGHSISDQGLGYRSIDE
INVVKASRDPIDRVKARLIECGWATPQELKAEEKRIRKEVDAAVKVAETA
PHPPLSDLFSDVYVGDPGFIRGTLPSNGNNS*
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mRNA from alignment at tig00000904_pilon:41052..42347+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10531.t1 ID=Ggra10531.t1|Name=Ggra10531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000904_pilon:41052..42347+ (Gracilaria gracilis GNS1m male)
ATGGCCGCGCGCCACGGCCTGAGAAGCTTGGCTGTTCGGCCGCGCCCCCT
TTCTACACAGGTTAGCTACATCCGCCATCTTTCCCTCTGGGCTCGATTGT
TCCCTTCGCTCGTGTCTCCGCCGCACAATCCAATCAATCCAATCGAAGCT
CCTCCACCCGAACGGCGCACTGACCCATCCTCTCGTCCCGATGCATTCCA
ATCTGCGCAGTCACAACAGGCTCCAGCAGAAGTCGTATTCGATATCACCC
CGTTTGCCACTCACAAGATTGACGCTCCGGAACCCAAGGCTGTTTCCAAT
GCCGATGAACTTCATGACTTTTTCCGTATCATGTATCGCATGCGCCGCAT
GGAGATGGAATCCGATGCGCTCTACACCCGACAAATGGTCCGTGGCTTCT
GTCATCTGTACAACGGACAGGAAGCTGTTGCTGTTGGTATCGAGGCCGCT
ATTACATATGACGACTGCCTTATCACCGCGTACCGCAATCATTGCCAACA
ACTTGCGCGTGGTGACACCGTCGAATCCATACTCTCGGAGCTCACAGGAA
GGGTGAACGGCTGTTCAAAGGGTAAAGGTGGTTCTATGCACTTGTATAAA
CCTCAGAATAACTATTATGGTGGAAATGGTATTGTTGGCGCTCAAGGCCC
CCTTGGAGCCGGTCTTGCCTTTGCCCAGAAATACAACAACACCGGAAAGG
TTGCCATCACCATGTTCGGCGATGGTGCAGCCAATCAAGGACAAATCTTT
GAAGTAATCAATATGTCCGCTTTGTGGAATCTGCCAACTGTGTTTGTATG
TGAGAATAACCGTTACGGAATGGGAACATCCACGAAGAGAAGCGCAAAAT
CAGAGGACTTTTATACAAGAGGCGATTACATTCCGGGCATCAGAGTGGAT
GGTATGGATGTTCTTTGCGTGCGCGAAGGCATGAAGTACGCGACTGACTA
TGCTCGTGAGAACGGACCAATATATGTTGAGATGGACACCTATCGCTATA
AGGGGCATAGTATTTCCGATCAAGGTCTCGGTTACCGTTCTATCGACGAG
ATTAACGTTGTGAAAGCCAGCCGCGACCCTATTGACAGGGTGAAGGCTCG
TTTGATTGAATGCGGTTGGGCAACACCTCAAGAGTTGAAGGCGGAAGAGA
AGAGGATCCGAAAGGAAGTTGATGCAGCTGTCAAAGTCGCCGAGACTGCT
CCCCACCCCCCGTTATCAGACTTGTTTTCGGATGTATATGTCGGTGATCC
GGGTTTCATTCGCGGTACCTTACCGTCTAATGGGAATAATTCGTAA
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Coding sequence (CDS) from alignment at tig00000904_pilon:41052..42347+

>Ggra10531.t1 ID=Ggra10531.t1|Name=Ggra10531.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00000904_pilon:41052..42347+ (Gracilaria gracilis GNS1m male)
ATGGCCGCGCGCCACGGCCTGAGAAGCTTGGCTGTTCGGCCGCGCCCCCT
TTCTACACAGTCACAACAGGCTCCAGCAGAAGTCGTATTCGATATCACCC
CGTTTGCCACTCACAAGATTGACGCTCCGGAACCCAAGGCTGTTTCCAAT
GCCGATGAACTTCATGACTTTTTCCGTATCATGTATCGCATGCGCCGCAT
GGAGATGGAATCCGATGCGCTCTACACCCGACAAATGGTCCGTGGCTTCT
GTCATCTGTACAACGGACAGGAAGCTGTTGCTGTTGGTATCGAGGCCGCT
ATTACATATGACGACTGCCTTATCACCGCGTACCGCAATCATTGCCAACA
ACTTGCGCGTGGTGACACCGTCGAATCCATACTCTCGGAGCTCACAGGAA
GGGTGAACGGCTGTTCAAAGGGTAAAGGTGGTTCTATGCACTTGTATAAA
CCTCAGAATAACTATTATGGTGGAAATGGTATTGTTGGCGCTCAAGGCCC
CCTTGGAGCCGGTCTTGCCTTTGCCCAGAAATACAACAACACCGGAAAGG
TTGCCATCACCATGTTCGGCGATGGTGCAGCCAATCAAGGACAAATCTTT
GAAGTAATCAATATGTCCGCTTTGTGGAATCTGCCAACTGTGTTTGTATG
TGAGAATAACCGTTACGGAATGGGAACATCCACGAAGAGAAGCGCAAAAT
CAGAGGACTTTTATACAAGAGGCGATTACATTCCGGGCATCAGAGTGGAT
GGTATGGATGTTCTTTGCGTGCGCGAAGGCATGAAGTACGCGACTGACTA
TGCTCGTGAGAACGGACCAATATATGTTGAGATGGACACCTATCGCTATA
AGGGGCATAGTATTTCCGATCAAGGTCTCGGTTACCGTTCTATCGACGAG
ATTAACGTTGTGAAAGCCAGCCGCGACCCTATTGACAGGGTGAAGGCTCG
TTTGATTGAATGCGGTTGGGCAACACCTCAAGAGTTGAAGGCGGAAGAGA
AGAGGATCCGAAAGGAAGTTGATGCAGCTGTCAAAGTCGCCGAGACTGCT
CCCCACCCCCCGTTATCAGACTTGTTTTCGGATGTATATGTCGGTGATCC
GGGTTTCATTCGCGGTACCTTACCGTCTAATGGGAATAATTCGTAA
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