Ggra10468.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10468.t1
Unique NameGgra10468.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:402835..403952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G4D2
Preferred nameCOQ2
PFAMsUbiA
Max annot lvl2759|Eukaryota
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K07964,ko:K13412
KEGG ReactionR05000,R05616,R07273,R07811
KEGG Pathwayko00130,ko00531,ko01100,ko01110,ko04626,ko05145,ko05205,map00130,map00531,map01100,map01110,map04626,map05145,map05205
KEGG ModuleM00078,M00128
GOsGO:0000428,GO:0002083,GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0006066,GO:0006071,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008412,GO:0009058,GO:0009059,GO:0009108,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009987,GO:0010259,GO:0010467,GO:0016020,GO:0016021,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019400,GO:0019438,GO:0019748,GO:0019751,GO:0019866,GO:0030880,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032592,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042180,GO:0042181,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044455,GO:0044464,GO:0044550,GO:0046483,GO:0048856,GO:0050829,GO:0050830,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098542,GO:0098573,GO:1900558,GO:1900560,GO:1900561,GO:1900563,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901661,GO:1901663,GO:1902494,GO:1990234
Evalue1.55e-63
EggNOG OGsCOG0382@1|root,KOG1381@2759|Eukaryota
EC2.5.1.39,2.7.11.1,3.2.1.166
Description4-hydroxybenzoate decaprenyltransferase activity
COG categoryH
CAZyGH79
BiGG ReactioniMM904.YNR041C,iND750.YNR041C
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01001,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10468Ggra10468Gracilaria gracilis GNS1m malegenetig00000108_pilon 402835..403952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10468.t1Ggra10468.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 402835..403952 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10468.t1.start1Ggra10468.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 402835..402837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10468.t1.CDS1Ggra10468.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 402835..403353 +
Ggra10468.t1.CDS2Ggra10468.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 403512..403952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10468.t1.exon1Ggra10468.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 402835..403353 +
Ggra10468.t1.exon2Ggra10468.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 403512..403952 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10468.t1.intron1Ggra10468.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 403354..403511 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10468.t1.stop1Ggra10468.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 403950..403952 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10468.t1 ID=Ggra10468.t1|Name=Ggra10468.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MIFLPRFISAAATSRSRMMSLSSVIFRKGASSKQPSRQSPIDAYGHHRHL
VPRSFGSQPSTQSPNKNFQSSPLFLQLKSLQGQAKAAYTMISTSPYGRLM
RLDKPVGINLLFLPCAWSIGMHGSIPQMMYLLPLFYAGATVMRGAGCTIN
DIWDVDIDRRVARTRNRPIASGEAALGMTFNWGALLGCAATTGSVTLPCA
LLYGSGICWTMIYDTIYAHQDKSDDKKLGIGSTALAFGDRSKQVLAGFMG
GQMAFLLAAGASAGLGTTYYMGITAAMIHSGYQLNKVDVSNASDCMDVFL
SHQITGSLVWASIVCGRLL*
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spliced messenger RNA

>Ggra10468.t1 ID=Ggra10468.t1|Name=Ggra10468.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000108_pilon:402835..403952+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTTCCTCCCGCGCTTCATTTCTGCTGCCGCAACATCCCGCAGTCG
CATGATGTCGCTTTCGTCTGTGATATTTCGGAAGGGCGCTTCTTCTAAAC
AACCGTCGCGACAGTCACCGATTGACGCTTATGGTCACCATCGTCATTTG
GTGCCACGTTCGTTCGGCAGTCAGCCATCTACCCAATCCCCAAACAAAAA
CTTTCAGTCATCGCCGTTGTTCCTGCAGCTTAAATCATTACAAGGACAAG
CAAAGGCCGCATACACTATGATCTCTACATCTCCTTATGGTCGTTTGATG
CGCCTGGACAAACCTGTGGGCATCAATCTTCTGTTTCTTCCATGTGCATG
GTCGATAGGAATGCACGGCAGCATTCCACAGATGATGTATCTTCTGCCGT
TGTTCTACGCCGGGGCCACAGTCATGCGCGGAGCTGGATGTACCATTAAC
GATATATGGGACGTAGACATAGATCGCCGGGTGGCTCGAACACGTAATCG
ACCAATTGCTTCCGGTGAAGCCGCGTTAGGAATGACATTCAACTGGGGGG
CATTGCTCGGTTGTGCAGCCACAACAGGTTCAGTCACTCTGCCATGCGCG
CTGTTGTACGGATCTGGGATTTGCTGGACAATGATCTATGACACCATCTA
CGCTCATCAGGATAAGAGTGACGACAAGAAGCTGGGCATAGGCTCGACTG
CGCTGGCATTTGGCGACCGTAGCAAACAGGTGTTGGCTGGTTTCATGGGC
GGACAGATGGCATTTCTGTTAGCGGCCGGCGCCTCAGCAGGACTCGGAAC
GACGTATTACATGGGAATCACAGCAGCGATGATACACAGTGGATACCAGC
TGAACAAAGTGGATGTTTCAAACGCGAGCGATTGCATGGATGTGTTTCTG
AGCCACCAGATCACTGGCTCGTTGGTTTGGGCAAGCATTGTTTGCGGACG
ACTTTTGTAA
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protein sequence of Ggra10468.t1

>Ggra10468.t1 ID=Ggra10468.t1|Name=Ggra10468.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MIFLPRFISAAATSRSRMMSLSSVIFRKGASSKQPSRQSPIDAYGHHRHL
VPRSFGSQPSTQSPNKNFQSSPLFLQLKSLQGQAKAAYTMISTSPYGRLM
RLDKPVGINLLFLPCAWSIGMHGSIPQMMYLLPLFYAGATVMRGAGCTIN
DIWDVDIDRRVARTRNRPIASGEAALGMTFNWGALLGCAATTGSVTLPCA
LLYGSGICWTMIYDTIYAHQDKSDDKKLGIGSTALAFGDRSKQVLAGFMG
GQMAFLLAAGASAGLGTTYYMGITAAMIHSGYQLNKVDVSNASDCMDVFL
SHQITGSLVWASIVCGRLL*
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mRNA from alignment at tig00000108_pilon:402835..403952+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10468.t1 ID=Ggra10468.t1|Name=Ggra10468.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1118bp|location=Sequence derived from alignment at tig00000108_pilon:402835..403952+ (Gracilaria gracilis GNS1m male)
ATGATTTTCCTCCCGCGCTTCATTTCTGCTGCCGCAACATCCCGCAGTCG
CATGATGTCGCTTTCGTCTGTGATATTTCGGAAGGGCGCTTCTTCTAAAC
AACCGTCGCGACAGTCACCGATTGACGCTTATGGTCACCATCGTCATTTG
GTGCCACGTTCGTTCGGCAGTCAGCCATCTACCCAATCCCCAAACAAAAA
CTTTCAGTCATCGCCGTTGTTCCTGCAGCTTAAATCATTACAAGGACAAG
CAAAGGCCGCATACACTATGATCTCTACATCTCCTTATGGTCGTTTGATG
CGCCTGGACAAACCTGTGGGCATCAATCTTCTGTTTCTTCCATGTGCATG
GTCGATAGGAATGCACGGCAGCATTCCACAGATGATGTATCTTCTGCCGT
TGTTCTACGCCGGGGCCACAGTCATGCGCGGAGCTGGATGTACCATTAAC
GATATATGGGACGTAGACATAGATCGCCGGGTGGCTCGAACACGTAATCG
ACCAATTGCTTCCGGTGAAGTAAGCGTCAACGGGGCGGTTGCTTCTCTGG
TCGCAAACTGCTGACGGCTTTGGGCATCCTTACTTGCTTGAATGAAGCAA
GCTTTTTGGTGGCGTCGCTCAGCGTTCTACCAGTGATGTTTTATCCACTT
GCAAAACGGCGCTTTGTTTACCCGCAGGCCGCGTTAGGAATGACATTCAA
CTGGGGGGCATTGCTCGGTTGTGCAGCCACAACAGGTTCAGTCACTCTGC
CATGCGCGCTGTTGTACGGATCTGGGATTTGCTGGACAATGATCTATGAC
ACCATCTACGCTCATCAGGATAAGAGTGACGACAAGAAGCTGGGCATAGG
CTCGACTGCGCTGGCATTTGGCGACCGTAGCAAACAGGTGTTGGCTGGTT
TCATGGGCGGACAGATGGCATTTCTGTTAGCGGCCGGCGCCTCAGCAGGA
CTCGGAACGACGTATTACATGGGAATCACAGCAGCGATGATACACAGTGG
ATACCAGCTGAACAAAGTGGATGTTTCAAACGCGAGCGATTGCATGGATG
TGTTTCTGAGCCACCAGATCACTGGCTCGTTGGTTTGGGCAAGCATTGTT
TGCGGACGACTTTTGTAA
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Coding sequence (CDS) from alignment at tig00000108_pilon:402835..403952+

>Ggra10468.t1 ID=Ggra10468.t1|Name=Ggra10468.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000108_pilon:402835..403952+ (Gracilaria gracilis GNS1m male)
ATGATTTTCCTCCCGCGCTTCATTTCTGCTGCCGCAACATCCCGCAGTCG
CATGATGTCGCTTTCGTCTGTGATATTTCGGAAGGGCGCTTCTTCTAAAC
AACCGTCGCGACAGTCACCGATTGACGCTTATGGTCACCATCGTCATTTG
GTGCCACGTTCGTTCGGCAGTCAGCCATCTACCCAATCCCCAAACAAAAA
CTTTCAGTCATCGCCGTTGTTCCTGCAGCTTAAATCATTACAAGGACAAG
CAAAGGCCGCATACACTATGATCTCTACATCTCCTTATGGTCGTTTGATG
CGCCTGGACAAACCTGTGGGCATCAATCTTCTGTTTCTTCCATGTGCATG
GTCGATAGGAATGCACGGCAGCATTCCACAGATGATGTATCTTCTGCCGT
TGTTCTACGCCGGGGCCACAGTCATGCGCGGAGCTGGATGTACCATTAAC
GATATATGGGACGTAGACATAGATCGCCGGGTGGCTCGAACACGTAATCG
ACCAATTGCTTCCGGTGAAGCCGCGTTAGGAATGACATTCAACTGGGGGG
CATTGCTCGGTTGTGCAGCCACAACAGGTTCAGTCACTCTGCCATGCGCG
CTGTTGTACGGATCTGGGATTTGCTGGACAATGATCTATGACACCATCTA
CGCTCATCAGGATAAGAGTGACGACAAGAAGCTGGGCATAGGCTCGACTG
CGCTGGCATTTGGCGACCGTAGCAAACAGGTGTTGGCTGGTTTCATGGGC
GGACAGATGGCATTTCTGTTAGCGGCCGGCGCCTCAGCAGGACTCGGAAC
GACGTATTACATGGGAATCACAGCAGCGATGATACACAGTGGATACCAGC
TGAACAAAGTGGATGTTTCAAACGCGAGCGATTGCATGGATGTGTTTCTG
AGCCACCAGATCACTGGCTCGTTGGTTTGGGCAAGCATTGTTTGCGGACG
ACTTTTGTAA
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