Ggra10465.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10465.t1
Unique Name	Ggra10465.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	716

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000108_pilon	contig	tig00000108_pilon:395573..397720 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706950.1
PFAMs	CN_hydrolase,NAD_synthase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00010,RC00100
KEGG ko	ko:K01950
KEGG Reaction	R00257
KEGG Pathway	ko00760,ko01100,map00760,map01100
KEGG Module	M00115
GOs	GO:0003674,GO:0003824,GO:0003952,GO:0004359,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	2.18e-296
EggNOG OGs	COG0171@1\|root,KOG2303@2759\|Eukaryota
EC	6.3.5.1
Description	NAD synthase (glutamine-hydrolyzing) activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10465	Ggra10465	Gracilaria gracilis GNS1m male	gene	tig00000108_pilon 395573..397720 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10465.t1.stop1	Ggra10465.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000108_pilon 395573..395575 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10465.t1.CDS1	Ggra10465.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000108_pilon 395573..397720 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10465.t1.exon1	Ggra10465.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000108_pilon 395573..397720 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10465.t1.start1	Ggra10465.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000108_pilon 397718..397720 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10465.t1	Ggra10465.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000108_pilon 395573..397720 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000108_pilon:395573..397720-
coding sequence from alignment at tig00000108_pilon:395573..397720-

mRNA sequence

>Ggra10465.t1 ID=Ggra10465.t1|Name=Ggra10465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=716bp
MPIVTVATCSLNQWAMDFQGNLNRVKKSVQKAKQQHARYRLGPELEISGY
GCEDHFLELDTFTHTWECIAALISEGYSDDIVLDIGGPVMHRDVAYNCRI
LILNREILLVRPKITFADDGNYREPRWFTPWHRHRAVEELILPKAVRDVT
SSKKPHCPIGQAIIEFCDGIAIGCESCEELWSPMSTHLELYSEGVDIVGN
GSGSHHSLRKLNERLELFNSATRKCGGAYLYSNQIGCDGGRLYYDGSALI
ALNGTILKQGSQFTLETEVEVLIATIETNDISAHRRAKACIGVQAADSRS
KTRIPRIHPAGSFQLSNDDSSKQHPTEPLPELMRFRPEEEIARGPACWLW
DYLRRSGMNGFFLPLSGGADSSSTAVIVGSMCQMLVAAAKSGNCEERLLN
EIRRVSQTDHEYVPRDARELANRIFHTVYLGSKGSSSAETKGRAAALSEE
IGAWHASVDIHSVVDAAITVFVSVFGSSARPRFKVHGGSNAENLARQNLQ
ARIRMVLSYLFAQLLLWARVGKGSLLVLGSANVDEGLRGYLTKYDCSSAD
LNPIGGISKMDLRRFLRWAATEEGLGYGVLKEVVDAPPTAELEPLTESYV
QTDEEDMGMTYEELSWFGRLRKLGRCGPYNMYVKLVSIWKDRFEIQEVAQ
RVKFFFRMYSINRHKLTTLTPSYHAEDYSPEDNRFDLRQFLYNVRWTWQF
RKIDEDVVARQAQAR*

spliced messenger RNA

>Ggra10465.t1 ID=Ggra10465.t1|Name=Ggra10465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2148bp|location=Sequence derived from alignment at tig00000108_pilon:395573..397720- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTATCGTAACAGTCGCGACGTGCAGCCTCAATCAGTGGGCGATGGA
TTTCCAAGGAAACTTGAATCGTGTGAAGAAATCTGTACAAAAAGCGAAGC
AACAACATGCACGATACCGGTTAGGACCGGAGTTGGAGATTTCAGGATAC
GGGTGTGAAGATCATTTCCTAGAGCTTGATACTTTTACACATACGTGGGA
ATGTATTGCGGCACTCATATCGGAGGGTTACTCGGACGATATTGTCCTTG
ACATAGGCGGTCCCGTCATGCATCGCGACGTTGCTTATAACTGTAGAATC
CTGATTCTCAATAGAGAAATACTATTGGTGAGACCGAAGATTACCTTTGC
CGACGATGGGAACTACAGGGAACCGCGCTGGTTCACACCATGGCACCGGC
ATCGTGCTGTGGAGGAACTGATTCTCCCAAAAGCCGTTCGCGACGTTACC
AGCAGCAAGAAGCCGCACTGTCCAATCGGTCAAGCTATAATTGAGTTCTG
CGATGGAATAGCAATCGGATGTGAGTCATGTGAGGAATTGTGGTCACCGA
TGTCGACACACCTTGAACTGTACTCGGAAGGTGTAGATATAGTTGGGAAT
GGAAGTGGTTCTCACCACAGCCTCCGAAAGCTTAATGAACGTCTTGAGCT
ATTCAACTCAGCAACTCGCAAATGTGGCGGTGCGTACCTCTACTCGAATC
AAATCGGCTGCGATGGAGGGCGACTTTACTATGATGGATCCGCGCTGATA
GCTTTAAATGGGACCATTCTAAAACAAGGCTCTCAGTTCACCCTGGAGAC
AGAAGTGGAAGTCCTCATTGCGACCATTGAGACCAATGATATCTCCGCAC
ATCGGCGTGCAAAAGCTTGTATTGGTGTCCAGGCTGCAGACTCTCGGTCC
AAAACCCGGATCCCGAGAATCCACCCAGCAGGATCTTTCCAGTTGTCCAA
TGATGACTCTTCTAAACAACACCCAACAGAACCTCTCCCTGAGTTAATGC
GGTTTCGTCCAGAGGAAGAGATCGCCCGAGGTCCTGCATGTTGGCTTTGG
GACTATCTGCGCCGCTCTGGAATGAACGGTTTCTTTCTACCTCTGAGTGG
AGGGGCAGATTCCTCTTCAACAGCGGTCATCGTGGGGAGCATGTGCCAAA
TGCTTGTAGCAGCCGCCAAGAGTGGTAATTGTGAAGAGAGACTGCTCAAT
GAAATCCGTCGAGTGTCGCAAACAGATCATGAATACGTGCCACGGGATGC
ACGAGAGCTAGCAAATCGAATTTTCCACACAGTGTACCTTGGAAGTAAGG
GATCATCGTCAGCAGAGACCAAAGGCAGGGCAGCTGCTCTATCTGAAGAA
ATTGGAGCTTGGCATGCATCAGTGGACATACATTCTGTGGTAGACGCCGC
TATCACTGTGTTTGTGAGTGTTTTCGGATCATCCGCAAGACCACGGTTCA
AAGTACATGGAGGGTCTAATGCCGAGAATTTAGCGCGTCAGAATCTGCAG
GCTCGAATACGAATGGTTCTCTCATACCTTTTCGCTCAATTGCTGCTATG
GGCGCGTGTAGGCAAAGGTTCGCTACTCGTTCTAGGGTCGGCGAATGTAG
ATGAAGGGCTTCGTGGGTACTTGACAAAATACGACTGCAGTTCAGCCGAC
CTGAACCCTATAGGAGGGATAAGCAAAATGGATTTACGTCGCTTCCTGCG
ATGGGCAGCTACTGAAGAAGGGCTTGGGTACGGGGTCTTGAAGGAGGTTG
TAGACGCACCGCCGACTGCTGAATTGGAGCCGTTGACAGAAAGCTATGTT
CAGACTGATGAAGAAGATATGGGTATGACATATGAAGAACTGTCTTGGTT
TGGAAGGCTTCGCAAGCTTGGACGATGTGGACCTTATAACATGTATGTGA
AACTGGTATCTATATGGAAAGATCGGTTCGAAATCCAGGAAGTCGCACAA
CGGGTAAAGTTCTTCTTCCGAATGTACTCAATCAATCGACACAAGCTGAC
TACACTTACACCTTCTTATCATGCTGAAGATTACTCTCCAGAAGACAATC
GCTTTGATCTTCGGCAATTTCTTTACAACGTGCGATGGACATGGCAATTC
CGAAAGATTGACGAAGACGTCGTTGCCCGTCAGGCGCAAGCAAGATAA

protein sequence of Ggra10465.t1

>Ggra10465.t1 ID=Ggra10465.t1|Name=Ggra10465.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=716bp
MPIVTVATCSLNQWAMDFQGNLNRVKKSVQKAKQQHARYRLGPELEISGY
GCEDHFLELDTFTHTWECIAALISEGYSDDIVLDIGGPVMHRDVAYNCRI
LILNREILLVRPKITFADDGNYREPRWFTPWHRHRAVEELILPKAVRDVT
SSKKPHCPIGQAIIEFCDGIAIGCESCEELWSPMSTHLELYSEGVDIVGN
GSGSHHSLRKLNERLELFNSATRKCGGAYLYSNQIGCDGGRLYYDGSALI
ALNGTILKQGSQFTLETEVEVLIATIETNDISAHRRAKACIGVQAADSRS
KTRIPRIHPAGSFQLSNDDSSKQHPTEPLPELMRFRPEEEIARGPACWLW
DYLRRSGMNGFFLPLSGGADSSSTAVIVGSMCQMLVAAAKSGNCEERLLN
EIRRVSQTDHEYVPRDARELANRIFHTVYLGSKGSSSAETKGRAAALSEE
IGAWHASVDIHSVVDAAITVFVSVFGSSARPRFKVHGGSNAENLARQNLQ
ARIRMVLSYLFAQLLLWARVGKGSLLVLGSANVDEGLRGYLTKYDCSSAD
LNPIGGISKMDLRRFLRWAATEEGLGYGVLKEVVDAPPTAELEPLTESYV
QTDEEDMGMTYEELSWFGRLRKLGRCGPYNMYVKLVSIWKDRFEIQEVAQ
RVKFFFRMYSINRHKLTTLTPSYHAEDYSPEDNRFDLRQFLYNVRWTWQF
RKIDEDVVARQAQAR*

mRNA from alignment at tig00000108_pilon:395573..397720-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10465.t1 ID=Ggra10465.t1|Name=Ggra10465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2148bp|location=Sequence derived from alignment at tig00000108_pilon:395573..397720- (Gracilaria gracilis GNS1m male)
ATGCCTATCGTAACAGTCGCGACGTGCAGCCTCAATCAGTGGGCGATGGA
TTTCCAAGGAAACTTGAATCGTGTGAAGAAATCTGTACAAAAAGCGAAGC
AACAACATGCACGATACCGGTTAGGACCGGAGTTGGAGATTTCAGGATAC
GGGTGTGAAGATCATTTCCTAGAGCTTGATACTTTTACACATACGTGGGA
ATGTATTGCGGCACTCATATCGGAGGGTTACTCGGACGATATTGTCCTTG
ACATAGGCGGTCCCGTCATGCATCGCGACGTTGCTTATAACTGTAGAATC
CTGATTCTCAATAGAGAAATACTATTGGTGAGACCGAAGATTACCTTTGC
CGACGATGGGAACTACAGGGAACCGCGCTGGTTCACACCATGGCACCGGC
ATCGTGCTGTGGAGGAACTGATTCTCCCAAAAGCCGTTCGCGACGTTACC
AGCAGCAAGAAGCCGCACTGTCCAATCGGTCAAGCTATAATTGAGTTCTG
CGATGGAATAGCAATCGGATGTGAGTCATGTGAGGAATTGTGGTCACCGA
TGTCGACACACCTTGAACTGTACTCGGAAGGTGTAGATATAGTTGGGAAT
GGAAGTGGTTCTCACCACAGCCTCCGAAAGCTTAATGAACGTCTTGAGCT
ATTCAACTCAGCAACTCGCAAATGTGGCGGTGCGTACCTCTACTCGAATC
AAATCGGCTGCGATGGAGGGCGACTTTACTATGATGGATCCGCGCTGATA
GCTTTAAATGGGACCATTCTAAAACAAGGCTCTCAGTTCACCCTGGAGAC
AGAAGTGGAAGTCCTCATTGCGACCATTGAGACCAATGATATCTCCGCAC
ATCGGCGTGCAAAAGCTTGTATTGGTGTCCAGGCTGCAGACTCTCGGTCC
AAAACCCGGATCCCGAGAATCCACCCAGCAGGATCTTTCCAGTTGTCCAA
TGATGACTCTTCTAAACAACACCCAACAGAACCTCTCCCTGAGTTAATGC
GGTTTCGTCCAGAGGAAGAGATCGCCCGAGGTCCTGCATGTTGGCTTTGG
GACTATCTGCGCCGCTCTGGAATGAACGGTTTCTTTCTACCTCTGAGTGG
AGGGGCAGATTCCTCTTCAACAGCGGTCATCGTGGGGAGCATGTGCCAAA
TGCTTGTAGCAGCCGCCAAGAGTGGTAATTGTGAAGAGAGACTGCTCAAT
GAAATCCGTCGAGTGTCGCAAACAGATCATGAATACGTGCCACGGGATGC
ACGAGAGCTAGCAAATCGAATTTTCCACACAGTGTACCTTGGAAGTAAGG
GATCATCGTCAGCAGAGACCAAAGGCAGGGCAGCTGCTCTATCTGAAGAA
ATTGGAGCTTGGCATGCATCAGTGGACATACATTCTGTGGTAGACGCCGC
TATCACTGTGTTTGTGAGTGTTTTCGGATCATCCGCAAGACCACGGTTCA
AAGTACATGGAGGGTCTAATGCCGAGAATTTAGCGCGTCAGAATCTGCAG
GCTCGAATACGAATGGTTCTCTCATACCTTTTCGCTCAATTGCTGCTATG
GGCGCGTGTAGGCAAAGGTTCGCTACTCGTTCTAGGGTCGGCGAATGTAG
ATGAAGGGCTTCGTGGGTACTTGACAAAATACGACTGCAGTTCAGCCGAC
CTGAACCCTATAGGAGGGATAAGCAAAATGGATTTACGTCGCTTCCTGCG
ATGGGCAGCTACTGAAGAAGGGCTTGGGTACGGGGTCTTGAAGGAGGTTG
TAGACGCACCGCCGACTGCTGAATTGGAGCCGTTGACAGAAAGCTATGTT
CAGACTGATGAAGAAGATATGGGTATGACATATGAAGAACTGTCTTGGTT
TGGAAGGCTTCGCAAGCTTGGACGATGTGGACCTTATAACATGTATGTGA
AACTGGTATCTATATGGAAAGATCGGTTCGAAATCCAGGAAGTCGCACAA
CGGGTAAAGTTCTTCTTCCGAATGTACTCAATCAATCGACACAAGCTGAC
TACACTTACACCTTCTTATCATGCTGAAGATTACTCTCCAGAAGACAATC
GCTTTGATCTTCGGCAATTTCTTTACAACGTGCGATGGACATGGCAATTC
CGAAAGATTGACGAAGACGTCGTTGCCCGTCAGGCGCAAGCAAGATAA

Coding sequence (CDS) from alignment at tig00000108_pilon:395573..397720-

>Ggra10465.t1 ID=Ggra10465.t1|Name=Ggra10465.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2148bp|location=Sequence derived from alignment at tig00000108_pilon:395573..397720- (Gracilaria gracilis GNS1m male)
ATGCCTATCGTAACAGTCGCGACGTGCAGCCTCAATCAGTGGGCGATGGA
TTTCCAAGGAAACTTGAATCGTGTGAAGAAATCTGTACAAAAAGCGAAGC
AACAACATGCACGATACCGGTTAGGACCGGAGTTGGAGATTTCAGGATAC
GGGTGTGAAGATCATTTCCTAGAGCTTGATACTTTTACACATACGTGGGA
ATGTATTGCGGCACTCATATCGGAGGGTTACTCGGACGATATTGTCCTTG
ACATAGGCGGTCCCGTCATGCATCGCGACGTTGCTTATAACTGTAGAATC
CTGATTCTCAATAGAGAAATACTATTGGTGAGACCGAAGATTACCTTTGC
CGACGATGGGAACTACAGGGAACCGCGCTGGTTCACACCATGGCACCGGC
ATCGTGCTGTGGAGGAACTGATTCTCCCAAAAGCCGTTCGCGACGTTACC
AGCAGCAAGAAGCCGCACTGTCCAATCGGTCAAGCTATAATTGAGTTCTG
CGATGGAATAGCAATCGGATGTGAGTCATGTGAGGAATTGTGGTCACCGA
TGTCGACACACCTTGAACTGTACTCGGAAGGTGTAGATATAGTTGGGAAT
GGAAGTGGTTCTCACCACAGCCTCCGAAAGCTTAATGAACGTCTTGAGCT
ATTCAACTCAGCAACTCGCAAATGTGGCGGTGCGTACCTCTACTCGAATC
AAATCGGCTGCGATGGAGGGCGACTTTACTATGATGGATCCGCGCTGATA
GCTTTAAATGGGACCATTCTAAAACAAGGCTCTCAGTTCACCCTGGAGAC
AGAAGTGGAAGTCCTCATTGCGACCATTGAGACCAATGATATCTCCGCAC
ATCGGCGTGCAAAAGCTTGTATTGGTGTCCAGGCTGCAGACTCTCGGTCC
AAAACCCGGATCCCGAGAATCCACCCAGCAGGATCTTTCCAGTTGTCCAA
TGATGACTCTTCTAAACAACACCCAACAGAACCTCTCCCTGAGTTAATGC
GGTTTCGTCCAGAGGAAGAGATCGCCCGAGGTCCTGCATGTTGGCTTTGG
GACTATCTGCGCCGCTCTGGAATGAACGGTTTCTTTCTACCTCTGAGTGG
AGGGGCAGATTCCTCTTCAACAGCGGTCATCGTGGGGAGCATGTGCCAAA
TGCTTGTAGCAGCCGCCAAGAGTGGTAATTGTGAAGAGAGACTGCTCAAT
GAAATCCGTCGAGTGTCGCAAACAGATCATGAATACGTGCCACGGGATGC
ACGAGAGCTAGCAAATCGAATTTTCCACACAGTGTACCTTGGAAGTAAGG
GATCATCGTCAGCAGAGACCAAAGGCAGGGCAGCTGCTCTATCTGAAGAA
ATTGGAGCTTGGCATGCATCAGTGGACATACATTCTGTGGTAGACGCCGC
TATCACTGTGTTTGTGAGTGTTTTCGGATCATCCGCAAGACCACGGTTCA
AAGTACATGGAGGGTCTAATGCCGAGAATTTAGCGCGTCAGAATCTGCAG
GCTCGAATACGAATGGTTCTCTCATACCTTTTCGCTCAATTGCTGCTATG
GGCGCGTGTAGGCAAAGGTTCGCTACTCGTTCTAGGGTCGGCGAATGTAG
ATGAAGGGCTTCGTGGGTACTTGACAAAATACGACTGCAGTTCAGCCGAC
CTGAACCCTATAGGAGGGATAAGCAAAATGGATTTACGTCGCTTCCTGCG
ATGGGCAGCTACTGAAGAAGGGCTTGGGTACGGGGTCTTGAAGGAGGTTG
TAGACGCACCGCCGACTGCTGAATTGGAGCCGTTGACAGAAAGCTATGTT
CAGACTGATGAAGAAGATATGGGTATGACATATGAAGAACTGTCTTGGTT
TGGAAGGCTTCGCAAGCTTGGACGATGTGGACCTTATAACATGTATGTGA
AACTGGTATCTATATGGAAAGATCGGTTCGAAATCCAGGAAGTCGCACAA
CGGGTAAAGTTCTTCTTCCGAATGTACTCAATCAATCGACACAAGCTGAC
TACACTTACACCTTCTTATCATGCTGAAGATTACTCTCCAGAAGACAATC
GCTTTGATCTTCGGCAATTTCTTTACAACGTGCGATGGACATGGCAATTC
CGAAAGATTGACGAAGACGTCGTTGCCCGTCAGGCGCAAGCAAGATAA