Ggra10460.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10460.t1
Unique NameGgra10460.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length556
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:385986..387982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_08750T0
Preferred nameESF1
PFAMsNUC153
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Evalue2.56e-48
EggNOG OGsCOG5638@1|root,KOG2318@2759|Eukaryota,38GAF@33154|Opisthokonta,3NU82@4751|Fungi
DescriptionPre-rRNA processing protein Esf1
COG categoryF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10460Ggra10460Gracilaria gracilis GNS1m malegenetig00000108_pilon 385986..387982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10460.t1Ggra10460.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 385986..387982 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10460.t1.start1Ggra10460.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 385986..385988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10460.t1.CDS1Ggra10460.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 385986..387609 +
Ggra10460.t1.CDS2Ggra10460.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 387939..387982 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10460.t1.exon1Ggra10460.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 385986..387609 +
Ggra10460.t1.exon2Ggra10460.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 387939..387982 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10460.t1.intron1Ggra10460.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 387610..387938 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10460.t1.stop1Ggra10460.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 387980..387982 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10460.t1 ID=Ggra10460.t1|Name=Ggra10460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=556bp
MAVESGATPTPKTPNPRKRATPSDHHKQHEQDTSDKRFAAARVDPRFSRV
PKRAKRHVADQRFKAALISNPGFRDLETPVDRFGRPKKGRLSHSIQEAVE
SDDDEFGISKGEDPLLKFGDGYQGYDSSDDDEQSDDMIEDMAQKHDAKME
TIPLGKATKRLAVLGLDWSTTRAVDILASLDSFCPPGKHVVSVEVHPSKF
GLKRLEKEATLGPQVISKTDWNVVQNARQQRIDGAPESPVQDERENESVK
DEEENESSGEEEDENEEEKKWKEQLALRKYEEERLKYYYAVVQFADEASA
DAVYKQCDGVEYAQSGLDFDLRFIPSDMKIETEPRDRADKIPDGYAPPEI
ASSSLNTSRVKLSWDADDPERVILKRRMVGKREEDEQNLKAYLASSSDEE
HGGREGLEEKKRLLLGAIEGGDEGAEEEQDEDMNMQISFEPGMFEKGEEI
VKRKEAREEQKNESMWEARMRRRAERKAEKRKARRARMENNGVQNGDTHE
EEEGIKAGDEGNGGFDDDFFSVERSFEDAENEAEVDGRRKARQRDEPENH
DGDDA*
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spliced messenger RNA

>Ggra10460.t1 ID=Ggra10460.t1|Name=Ggra10460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000108_pilon:385986..387982+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTAGAGTCGGGAGCAACTCCGACACCAAAAACACCCAATCCCCG
GAAGCGAGCAACACCATCCGACCACCATAAACAACACGAGCAAGACACAA
GCGACAAGCGTTTCGCAGCTGCCCGCGTCGATCCGCGCTTCAGCAGAGTT
CCAAAGAGGGCTAAGCGACATGTTGCGGATCAAAGGTTTAAGGCTGCTCT
GATATCCAACCCAGGATTTCGCGACCTGGAAACGCCGGTGGACCGTTTCG
GGAGACCGAAGAAAGGCAGACTATCACATTCTATTCAGGAAGCTGTGGAG
AGCGACGACGATGAGTTTGGAATCAGCAAAGGGGAGGACCCACTCTTGAA
ATTTGGCGACGGCTACCAGGGGTATGACAGTTCGGATGATGACGAGCAGT
CCGACGACATGATAGAAGATATGGCTCAGAAGCATGATGCTAAGATGGAA
ACTATTCCGCTTGGAAAGGCCACGAAAAGATTGGCTGTCTTGGGTCTTGA
CTGGTCTACCACGCGAGCTGTGGATATTTTGGCCAGTCTTGACAGCTTTT
GTCCCCCGGGGAAGCATGTCGTGTCGGTTGAGGTTCATCCATCCAAATTC
GGCCTGAAACGCCTTGAAAAGGAAGCCACTCTTGGTCCGCAGGTAATCTC
GAAGACCGATTGGAACGTCGTACAAAACGCCCGTCAGCAGCGAATAGATG
GTGCGCCCGAGTCACCCGTGCAAGATGAACGCGAGAACGAAAGCGTGAAG
GATGAAGAAGAGAATGAGTCTTCCGGGgaggaagaggacgagaacgagga
agagaagaagtggaagGAGCAACTAGCTTTGCGAAAGTATGAAGAGGAAA
GACTGAAGTACTACTATGCTGTCGTGCAATTTGCAGACGAGGCGAGCGCT
GATGCCGTTTACAAGCAGTGTGATGGGGTAGAGTACGCTCAGTCTGGACT
AGACTTTGACCTTCGCTTCATTCCGAGCGATATGAAGATTGAAACCGAAC
CAAGAGATCGCGCGGACAAAATACCAGACGGGTATGCCCCTCCTGAAATC
GCTTCGTCTTCGCTCAACACGTCTCGAGTAAAACTATCGTGGGATGCGGA
CGATCCTGAACGGGTGATTTTGAAGAGGAGGATGGTGGGTAAACGCGAAG
AGGACGAACAAAATCTTAAGGCATATCTAGCCTCTTCGTCAGACGAAGAG
CACGGTGGACGAGAGGGACTTGAAGAGAAGAAAAGACTGCTGCTGGGTGC
GATAGAGGGTGGTGATGAGGGTGCGGAGGAGGAACAGGACGAGGATATGA
ATATGCAGATTTCGTTTGAGCCAGGTATGTTTGAAAAGGGAGAGGAAATA
GTGAAGCGAAAGGAGGCACGCGAAGAGCAAAAGAATGAGAGTATGTGGGA
GGCGCGTATGCGTCGGCGTGCGGAGCGCAAGGCAGAGAAACGAAAAGCAC
GAAGGGCAAGAATGGAGAATAATGGGGTACAAAACGGCGATACACACGAA
GAGGAAGAGGGAATCAAGGCAGGTGATGAAGGAAACGGTGGATTCGATGA
CGACTTTTTCTCGGTGGAGCGTTCGTTTGAAGACGCTGAGAATGAAGCTG
AGGTTGACGGCagaaggaaagcaaGACAACGAGACGAACCAGAGAATCAT
GACGGAGATGATGCGTAG
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protein sequence of Ggra10460.t1

>Ggra10460.t1 ID=Ggra10460.t1|Name=Ggra10460.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=556bp
MAVESGATPTPKTPNPRKRATPSDHHKQHEQDTSDKRFAAARVDPRFSRV
PKRAKRHVADQRFKAALISNPGFRDLETPVDRFGRPKKGRLSHSIQEAVE
SDDDEFGISKGEDPLLKFGDGYQGYDSSDDDEQSDDMIEDMAQKHDAKME
TIPLGKATKRLAVLGLDWSTTRAVDILASLDSFCPPGKHVVSVEVHPSKF
GLKRLEKEATLGPQVISKTDWNVVQNARQQRIDGAPESPVQDERENESVK
DEEENESSGEEEDENEEEKKWKEQLALRKYEEERLKYYYAVVQFADEASA
DAVYKQCDGVEYAQSGLDFDLRFIPSDMKIETEPRDRADKIPDGYAPPEI
ASSSLNTSRVKLSWDADDPERVILKRRMVGKREEDEQNLKAYLASSSDEE
HGGREGLEEKKRLLLGAIEGGDEGAEEEQDEDMNMQISFEPGMFEKGEEI
VKRKEAREEQKNESMWEARMRRRAERKAEKRKARRARMENNGVQNGDTHE
EEEGIKAGDEGNGGFDDDFFSVERSFEDAENEAEVDGRRKARQRDEPENH
DGDDA*
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mRNA from alignment at tig00000108_pilon:385986..387982+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10460.t1 ID=Ggra10460.t1|Name=Ggra10460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1997bp|location=Sequence derived from alignment at tig00000108_pilon:385986..387982+ (Gracilaria gracilis GNS1m male)
ATGGCAGTAGAGTCGGGAGCAACTCCGACACCAAAAACACCCAATCCCCG
GAAGCGAGCAACACCATCCGACCACCATAAACAACACGAGCAAGACACAA
GCGACAAGCGTTTCGCAGCTGCCCGCGTCGATCCGCGCTTCAGCAGAGTT
CCAAAGAGGGCTAAGCGACATGTTGCGGATCAAAGGTTTAAGGCTGCTCT
GATATCCAACCCAGGATTTCGCGACCTGGAAACGCCGGTGGACCGTTTCG
GGAGACCGAAGAAAGGCAGACTATCACATTCTATTCAGGAAGCTGTGGAG
AGCGACGACGATGAGTTTGGAATCAGCAAAGGGGAGGACCCACTCTTGAA
ATTTGGCGACGGCTACCAGGGGTATGACAGTTCGGATGATGACGAGCAGT
CCGACGACATGATAGAAGATATGGCTCAGAAGCATGATGCTAAGATGGAA
ACTATTCCGCTTGGAAAGGCCACGAAAAGATTGGCTGTCTTGGGTCTTGA
CTGGTCTACCACGCGAGCTGTGGATATTTTGGCCAGTCTTGACAGCTTTT
GTCCCCCGGGGAAGCATGTCGTGTCGGTTGAGGTTCATCCATCCAAATTC
GGCCTGAAACGCCTTGAAAAGGAAGCCACTCTTGGTCCGCAGGTAATCTC
GAAGACCGATTGGAACGTCGTACAAAACGCCCGTCAGCAGCGAATAGATG
GTGCGCCCGAGTCACCCGTGCAAGATGAACGCGAGAACGAAAGCGTGAAG
GATGAAGAAGAGAATGAGTCTTCCGGGgaggaagaggacgagaacgagga
agagaagaagtggaagGAGCAACTAGCTTTGCGAAAGTATGAAGAGGAAA
GACTGAAGTACTACTATGCTGTCGTGCAATTTGCAGACGAGGCGAGCGCT
GATGCCGTTTACAAGCAGTGTGATGGGGTAGAGTACGCTCAGTCTGGACT
AGACTTTGACCTTCGCTTCATTCCGAGCGATATGAAGATTGAAACCGAAC
CAAGAGATCGCGCGGACAAAATACCAGACGGGTATGCCCCTCCTGAAATC
GCTTCGTCTTCGCTCAACACGTCTCGAGTAAAACTATCGTGGGATGCGGA
CGATCCTGAACGGGTGATTTTGAAGAGGAGGATGGTGGGTAAACGCGAAG
AGGACGAACAAAATCTTAAGGCATATCTAGCCTCTTCGTCAGACGAAGAG
CACGGTGGACGAGAGGGACTTGAAGAGAAGAAAAGACTGCTGCTGGGTGC
GATAGAGGGTGGTGATGAGGGTGCGGAGGAGGAACAGGACGAGGATATGA
ATATGCAGATTTCGTTTGAGCCAGGTATGTTTGAAAAGGGAGAGGAAATA
GTGAAGCGAAAGGAGGCACGCGAAGAGCAAAAGAATGAGAGTATGTGGGA
GGCGCGTATGCGTCGGCGTGCGGAGCGCAAGGCAGAGAAACGAAAAGCAC
GAAGGGCAAGAATGGAGAATAATGGGGTACAAAACGGCGATACACACGAA
GAGGAAGAGGGAATCAAGGCAGGTGATGAAGGAAACGGTGGATTCGATGA
CGACTTTTTCTCGGTGGAGCGTTCGTTTGAAGACGCTGAGAATGAAGCTG
AGGTTGACGGCagaaggaaagcaagtacgagaagaaaggagaagaagagc
agaagggaagaTCGCAAGCGCGGCAGTGATGCAAGCGACGACTACGGAGG
CAAGCACGAAATGCAAGACAAATTGCAGACACTGGACATGGTGACGGGAA
GTTTACTAAAGGCAGATGAGTCAGATGACGAAGAGCGGAGCCGAAGGCGT
GATAAGCGCAAAGGCGGGCATCGACAAGCGCGGCGGGAACGAATCAAAGA
AGAAAAGGCGAGAAGTAGCGCGATGGACGTGAAAGACGAGCGGTTCGACA
AGATGTACAACTCACACCTGTTCGCGATTGACCGAACTCATCGCAAGTTC
AAGGACAACGAGACGAACCAGAGAATCATGACGGAGATGATGCGTAG
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Coding sequence (CDS) from alignment at tig00000108_pilon:385986..387982+

>Ggra10460.t1 ID=Ggra10460.t1|Name=Ggra10460.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00000108_pilon:385986..387982+ (Gracilaria gracilis GNS1m male)
ATGGCAGTAGAGTCGGGAGCAACTCCGACACCAAAAACACCCAATCCCCG
GAAGCGAGCAACACCATCCGACCACCATAAACAACACGAGCAAGACACAA
GCGACAAGCGTTTCGCAGCTGCCCGCGTCGATCCGCGCTTCAGCAGAGTT
CCAAAGAGGGCTAAGCGACATGTTGCGGATCAAAGGTTTAAGGCTGCTCT
GATATCCAACCCAGGATTTCGCGACCTGGAAACGCCGGTGGACCGTTTCG
GGAGACCGAAGAAAGGCAGACTATCACATTCTATTCAGGAAGCTGTGGAG
AGCGACGACGATGAGTTTGGAATCAGCAAAGGGGAGGACCCACTCTTGAA
ATTTGGCGACGGCTACCAGGGGTATGACAGTTCGGATGATGACGAGCAGT
CCGACGACATGATAGAAGATATGGCTCAGAAGCATGATGCTAAGATGGAA
ACTATTCCGCTTGGAAAGGCCACGAAAAGATTGGCTGTCTTGGGTCTTGA
CTGGTCTACCACGCGAGCTGTGGATATTTTGGCCAGTCTTGACAGCTTTT
GTCCCCCGGGGAAGCATGTCGTGTCGGTTGAGGTTCATCCATCCAAATTC
GGCCTGAAACGCCTTGAAAAGGAAGCCACTCTTGGTCCGCAGGTAATCTC
GAAGACCGATTGGAACGTCGTACAAAACGCCCGTCAGCAGCGAATAGATG
GTGCGCCCGAGTCACCCGTGCAAGATGAACGCGAGAACGAAAGCGTGAAG
GATGAAGAAGAGAATGAGTCTTCCGGGgaggaagaggacgagaacgagga
agagaagaagtggaagGAGCAACTAGCTTTGCGAAAGTATGAAGAGGAAA
GACTGAAGTACTACTATGCTGTCGTGCAATTTGCAGACGAGGCGAGCGCT
GATGCCGTTTACAAGCAGTGTGATGGGGTAGAGTACGCTCAGTCTGGACT
AGACTTTGACCTTCGCTTCATTCCGAGCGATATGAAGATTGAAACCGAAC
CAAGAGATCGCGCGGACAAAATACCAGACGGGTATGCCCCTCCTGAAATC
GCTTCGTCTTCGCTCAACACGTCTCGAGTAAAACTATCGTGGGATGCGGA
CGATCCTGAACGGGTGATTTTGAAGAGGAGGATGGTGGGTAAACGCGAAG
AGGACGAACAAAATCTTAAGGCATATCTAGCCTCTTCGTCAGACGAAGAG
CACGGTGGACGAGAGGGACTTGAAGAGAAGAAAAGACTGCTGCTGGGTGC
GATAGAGGGTGGTGATGAGGGTGCGGAGGAGGAACAGGACGAGGATATGA
ATATGCAGATTTCGTTTGAGCCAGGTATGTTTGAAAAGGGAGAGGAAATA
GTGAAGCGAAAGGAGGCACGCGAAGAGCAAAAGAATGAGAGTATGTGGGA
GGCGCGTATGCGTCGGCGTGCGGAGCGCAAGGCAGAGAAACGAAAAGCAC
GAAGGGCAAGAATGGAGAATAATGGGGTACAAAACGGCGATACACACGAA
GAGGAAGAGGGAATCAAGGCAGGTGATGAAGGAAACGGTGGATTCGATGA
CGACTTTTTCTCGGTGGAGCGTTCGTTTGAAGACGCTGAGAATGAAGCTG
AGGTTGACGGCagaaggaaagcaaGACAACGAGACGAACCAGAGAATCAT
GACGGAGATGATGCGTAG
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