Ggra10458.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10458.t1
Unique NameGgra10458.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:359600..361500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702721.1
Preferred nameCENPA
PFAMsHistone
Max annot lvl2759|Eukaryota
KEGG koko:K11253,ko:K11495
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
GOsGO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000939,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005727,GO:0005729,GO:0005737,GO:0005829,GO:0006276,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007163,GO:0008104,GO:0008150,GO:0009987,GO:0016043,GO:0019237,GO:0022402,GO:0022607,GO:0030010,GO:0030541,GO:0030543,GO:0031055,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031618,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033036,GO:0033365,GO:0034080,GO:0034502,GO:0034506,GO:0034508,GO:0034613,GO:0034622,GO:0034724,GO:0034728,GO:0040001,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043505,GO:0043565,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0046821,GO:0048285,GO:0051179,GO:0051234,GO:0051276,GO:0051293,GO:0051294,GO:0051301,GO:0051382,GO:0051383,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0061638,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0070013,GO:0070727,GO:0070925,GO:0071103,GO:0071459,GO:0071824,GO:0071840,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:1901363,GO:1902850,GO:1903047,GO:1990837
Evalue1.61e-26
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Descriptionprotein heterodimerization activity
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10458Ggra10458Gracilaria gracilis GNS1m malegenetig00000108_pilon 359600..361500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10458.t1Ggra10458.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 359600..361500 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10458.t1.start1Ggra10458.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 359600..359602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10458.t1.CDS1Ggra10458.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 359600..359803 +
Ggra10458.t1.CDS2Ggra10458.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 361222..361500 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10458.t1.exon1Ggra10458.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 359600..359803 +
Ggra10458.t1.exon2Ggra10458.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 361222..361500 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10458.t1.intron1Ggra10458.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 359804..361221 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10458.t1.stop1Ggra10458.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 361498..361500 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=161bp
MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEA
FVVNLMEDANLCAIHGKRTSSNKGNLSKHIATRHEHRKDFVCPFNGCNRR
FAKKYNMLRHLSASGVHRASPMAAAKMAGKRRASDRAKWSSMELDLAKFL
AEQCRPGLVA*
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spliced messenger RNA

>Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000108_pilon:359600..361500+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATTCGCAAGTACCAACGGTCCGTGAACCTGTTGATTCGAAGACT
GCCGTTTGCTCGTTTGGTGAAGGAGATTACGCAGAAGTTTCACCACGACT
TGCGCTGGCGCGTGGACGCGATTGAGGCGCTGCAGGTGTCTGCCGAAGCG
TTTGTGGTGAATCTGATGGAAGATGCAAACTTGTGTGCCATCCATGGGAA
GAGAACGTCGTCCAACAAGGGCAACCTGTCCAAGCACATTGCCACGCGGC
ACGAGCACCGCAAGGATTTTGTGTGCCCGTTCAACGGGTGCAACAGAAGG
TTTGCCAAGAAGTACAACATGCTGCGACATTTGTCGGCCAGCGGCGTGCA
TCGCGCGTCGCCCATGGCCGCCGCCAAGATGGCCGGCAAGAGGAGGGCGT
CTGATCGCGCAAAGTGGAGCTCCATGGAGCTGGATTTGGCAAAGTTTCTG
GCGGAGCAATGTCGGCCTGGCTTGGTGGCATGA
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protein sequence of Ggra10458.t1

>Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEA
FVVNLMEDANLCAIHGKRTSSNKGNLSKHIATRHEHRKDFVCPFNGCNRR
FAKKYNMLRHLSASGVHRASPMAAAKMAGKRRASDRAKWSSMELDLAKFL
AEQCRPGLVA*
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mRNA from alignment at tig00000108_pilon:359600..361500+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1901bp|location=Sequence derived from alignment at tig00000108_pilon:359600..361500+ (Gracilaria gracilis GNS1m male)
ATGGAGATTCGCAAGTACCAACGGTCCGTGAACCTGTTGATTCGAAGACT GCCGTTTGCTCGTTTGGTGAAGGAGATTACGCAGAAGTTTCACCACGACT TGCGCTGGCGCGTGGACGCGATTGAGGCGCTGCAGGTGTCTGCCGAAGCG TTTGTGGTGAATCTGATGGAAGATGCAAACTTGTGTGCCATCCATGGGAA GAGAGTGACGATCATGCCTAGGGACATCCACCTCGCGCGACGAATCCGCG GACTTAGCAATGACCCAGCCAACTATTTATGAAGGCAACGGCAGTGAGTG GGCGGCGGCGGTGGGGTACAGCCGAGTAACTTTAGTTAGTAAggcggggg ggggggggggggggggggagaggaggAGACAGGTGCGCGTTTGAGAGGCC AATTTTGGGGCGAGTTGTGATTGGCGGCGTGTGATTGGCGGCGCAGCTTT TGCACAGCATTGCAGAAACAGCGTTTGTATCTACAGTTAGGTTGAACATA AAGTAACATGTGAGTGCGCGAGCGCGACGGCGGCTCTCTGCGCGCGCGCG CGAGCAGCTGCAGCGACTCACGTGCGGCGCGCGCGCGTCGGTGGAACGCG CGCGCGCGCGCGACATGATGTCGCGCGCTCAACGTGAACGATTGGCGCAC GTGGAAGCGTGTTACACAAACAGCCGCGTCGGGGAATGGACGAACGCGCG CGCACCAGCGCGCCACGAGCACACACACGCAccgccgccaccgccgccac cgccgccgccgccgagtgccgcgcggcgcggcACGTAAGTAAAAAAAAAA AGGGCGCGCCGCGCCCGACGGTGCGCGGCTGCACGAATGTGGCGCGCGCC AGCGCTAGCGCCAGCGCGCGCGCCGCGGCGCGCGTGGAAAGCGTGCCACG CCAGTGTGGGCGCGCGGCGCAGTGCGCGCACGCACGGCGCGTGCGGAAGA GGAACTAGCGCGCCTGCTTACGTGCGCCAATCAGCGTGCGCGTGCGCGCC GCGTGCGCGCGGACAGCACGCTTTCCACCCACAGCGCTTGCTCAGCGATG GTGCTCTCGCTCTTAAGCACGCCATGCGCGCCCCATTTTGTGCGTTGCGc tctctccctctcgcactcactcactcCCCTCCCCCGCCTCACCGCCTCAT CCCCGTCTaccgccgctaccaccacacccccccccttcctcacccccacc gtctaccgccgctaccaccaccaccacccccccgtctaccgccgccacca cTTGTCCTCCTCCTCCTCCTCCTTGTTGTTCACCGCTTCCGTTCTCCACA CACGCCGCTCCCCATCCGGCTGCAccaccccccccccccccccccccctc cccGAATGACTTCCATGTGGCTCCATCACCAGCTGGCCACGCGCGTGCTG CCCGGCGCGGCGGCGGCACCGTTCCTGCTACGCGCGCCGCTGACGCGCGA GCCGCTGTCGTACTACCCCGCGCTGTCGCgcggcggcgcggcggcggcgg gcggcggcggcgtcggcgtcggcggcagcagcagcggcagcagcagcgca tcggcgcgcagcaACGGCGCGAAAAGCGGCGCCAAGAAGTTGTTCCCGTG CCCGTACCCCAACTGCTCGCAGACGTCGTCCAACAAGGGCAACCTGTCCA AGCACATTGCCACGCGGCACGAGCACCGCAAGGATTTTGTGTGCCCGTTC AACGGGTGCAACAGAAGGTTTGCCAAGAAGTACAACATGCTGCGACATTT GTCGGCCAGCGGCGTGCATCGCGCGTCGCCCATGGCCGCCGCCAAGATGG CCGGCAAGAGGAGGGCGTCTGATCGCGCAAAGTGGAGCTCCATGGAGCTG GATTTGGCAAAGTTTCTGGCGGAGCAATGTCGGCCTGGCTTGGTGGCATG A
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Coding sequence (CDS) from alignment at tig00000108_pilon:359600..361500+

>Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000108_pilon:359600..361500+ (Gracilaria gracilis GNS1m male)
ATGGAGATTCGCAAGTACCAACGGTCCGTGAACCTGTTGATTCGAAGACT
GCCGTTTGCTCGTTTGGTGAAGGAGATTACGCAGAAGTTTCACCACGACT
TGCGCTGGCGCGTGGACGCGATTGAGGCGCTGCAGGTGTCTGCCGAAGCG
TTTGTGGTGAATCTGATGGAAGATGCAAACTTGTGTGCCATCCATGGGAA
GAGAACGTCGTCCAACAAGGGCAACCTGTCCAAGCACATTGCCACGCGGC
ACGAGCACCGCAAGGATTTTGTGTGCCCGTTCAACGGGTGCAACAGAAGG
TTTGCCAAGAAGTACAACATGCTGCGACATTTGTCGGCCAGCGGCGTGCA
TCGCGCGTCGCCCATGGCCGCCGCCAAGATGGCCGGCAAGAGGAGGGCGT
CTGATCGCGCAAAGTGGAGCTCCATGGAGCTGGATTTGGCAAAGTTTCTG
GCGGAGCAATGTCGGCCTGGCTTGGTGGCATGA
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