Ggra10455.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10455.t1
Unique NameGgra10455.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:353018..354853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0233661
Max annot lvl554915|Amoebozoa
Evalue9.22e-13
EggNOG OGsCOG5347@1|root,KOG0702@2759|Eukaryota,3XDTT@554915|Amoebozoa
DescriptionGTPase activator activity
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10455Ggra10455Gracilaria gracilis GNS1m malegenetig00000108_pilon 353018..354853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10455.t1Ggra10455.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 353018..354853 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10455.t1.stop1Ggra10455.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 353018..353020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10455.t1.CDS1Ggra10455.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 353018..353955 -
Ggra10455.t1.CDS2Ggra10455.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 354523..354853 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10455.t1.exon1Ggra10455.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 353018..353955 -
Ggra10455.t1.exon2Ggra10455.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 354523..354853 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10455.t1.intron1Ggra10455.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 353956..354522 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10455.t1.start1Ggra10455.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 354851..354853 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10455.t1 ID=Ggra10455.t1|Name=Ggra10455.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp
MARRISAREAEDAERKLRQLTRAGANRYCADCGDSAPNHVVLSLGTFVCS
VCANIHRDAKRRGVRNLDSAAFSIEDAYRMEDRGNDFARKRWMARWSPRD
FPEPPPGDVERKKTPAFAGTIDDLISQNNASAPSMGSGPASFGNVIQTPM
GPAVMTPQGLMPPAMAAQMMQRGGMGGGMGGMGTMNGMQGGMGGMSKMGM
PGGGMGGMGGMGAMNGMGGMGGGGMGMDQMGGGAGSSMGMGNQMGGGMGM
DMGANMNGGMGGMGMGGGMGMGGGMGPGMGMMGGMGGGMAPTHPAPLALP
APPPKDATGTGAGGDDDDVLNSLGPIQTLNISDNPPRPMGAGGMNGGMMG
SGAGMGMGMNGMMGGGAMNGTMGMNGTMGTGMNGSMGGGGGGGMMGAGNA
AANPFGAAAASGAASTNPFDDF*
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spliced messenger RNA

>Ggra10455.t1 ID=Ggra10455.t1|Name=Ggra10455.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000108_pilon:353018..354853- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGTCGTATTAGCGCACGTGAGGCGGAGGACGCCGAGAGAAAGCT
GAGGCAGCTTACTCGTGCCGGTGCCAATCGTTACTGTGCCGACTGTGGTG
ACTCTGCTCCTAATCATGTCGTTCTGTCGTTGGGAACGTTTGTTTGTTCC
GTGTGTGCCAACATTCACCGCGACGCCAAGCGAAGGGGCGTTCGTAATCT
TGACAGCGCTGCCTTCTCCATCGAAGACGCGTACAGGATGGAGGACCGTG
GAAATGACTTTGCTCGCAAGAGATGGATGGCTCGATGGTCCCCGAGGGAT
TTCCCTGAGCCGCCGCCCGGTGACGTTGAGCGGAAGAAGACACCAGCCTT
TGCGGGTACCATCGATGACCTCATCTCGCAGAACAACGCATCTGCCCCTT
CGATGGGGTCGGGGCCTGCTTCGTTTGGAAATGTGATTCAAACGCCCATG
GGTCCCGCTGTCATGACACCGCAAGGTCTCATGCCGCCGGCCATGGCCGC
CCAAATGATGCAGCGAGGCGGAATGGGCGGTGGTATGGGTGGTATGGGTA
CCATGAATGGTATGCAAGGTGGTATGGGAGGTATGAGCAAAATGGGTATG
CCTGGAGGAGGAATGGGCGGAATGGGCGGAATGGGTGCCATGAATGGTAT
GGGCGGAATGGGAGGCGGTGGCATGGGTATGGATCAAATGGGCGGAGGTG
CTGGGAGTAGTATGGGAATGGGTAATCAGATGGGCGGAGGTATGGGAATG
GATATGGGTGCGAACATGAACGGAGGTATGGGGGGAATGGGCATGGGAGG
AGGAATGGGAATGGGTGGAGGTATGGGACCCGGAATGGGTATGATGGGAG
GTATGGGTGGTGGTATGGCTCCGACACACCCAGCTCCCTTGGCGCTACCA
GCGCCACCTCCCAAGGACGCTACCGGAACTGGAGCTGGCGGAGACGATGA
TGATGTACTGAACTCATTAGGACCAATTCAAACCTTGAACATTAGTGACA
ATCCACCGCGCCCAATGGGTGCAGGCGGTATGAATGGTGGAATGATGGGT
AGTGGTGCGGGCATGGGAATGGGTATGAATGGCATGATGGGTGGCGGAGC
AATGAATGGTACTATGGGTATGAATGGGACTATGGGTACTGGTATGAACG
GCTCCATGGGTGGTGGTGGTGGTGGTGGTATGATGGGCGCTGGAAACGCT
GCGGCAAATCCGTTTGGCGCGGCAGCAGCATCGGGAGCGGCCTCTACCAA
TCCGTTTGATGACTTCTGA
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protein sequence of Ggra10455.t1

>Ggra10455.t1 ID=Ggra10455.t1|Name=Ggra10455.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MARRISAREAEDAERKLRQLTRAGANRYCADCGDSAPNHVVLSLGTFVCS
VCANIHRDAKRRGVRNLDSAAFSIEDAYRMEDRGNDFARKRWMARWSPRD
FPEPPPGDVERKKTPAFAGTIDDLISQNNASAPSMGSGPASFGNVIQTPM
GPAVMTPQGLMPPAMAAQMMQRGGMGGGMGGMGTMNGMQGGMGGMSKMGM
PGGGMGGMGGMGAMNGMGGMGGGGMGMDQMGGGAGSSMGMGNQMGGGMGM
DMGANMNGGMGGMGMGGGMGMGGGMGPGMGMMGGMGGGMAPTHPAPLALP
APPPKDATGTGAGGDDDDVLNSLGPIQTLNISDNPPRPMGAGGMNGGMMG
SGAGMGMGMNGMMGGGAMNGTMGMNGTMGTGMNGSMGGGGGGGMMGAGNA
AANPFGAAAASGAASTNPFDDF*
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mRNA from alignment at tig00000108_pilon:353018..354853-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10455.t1 ID=Ggra10455.t1|Name=Ggra10455.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00000108_pilon:353018..354853- (Gracilaria gracilis GNS1m male)
ATGGCGCGTCGTATTAGCGCACGTGAGGCGGAGGACGCCGAGAGAAAGCT
GAGGCAGCTTACTCGTGCCGGTGCCAATCGTTACTGTGCCGACTGTGGTG
ACTCTGCTCCTAATCATGTCGTTCTGTCGTTGGGAACGTTTGTTTGTTCC
GTGTGTGCCAACATTCACCGCGACGCCAAGCGAAGGGGCGTTCGTAATCT
TGACAGCGCTGCCTTCTCCATCGAAGACGCGTACAGGATGGAGGACCGTG
GAAATGACTTTGCTCGCAAGAGATGGATGGCTCGATGGTCCCCGAGGGAT
TTCCCTGAGCCGCCGCCCGGTGACGTTGAGCGTATCAGAGAATTTATCTG
GCTCAAGTATGACGGCAGTTGGGCGTCTAGGAGCATGACTGCGCCCCCGA
GACGCGATGACAGAAGTAGGCGAGATCGCTCTCGTGAGAGATATGACCGC
GACCGCGACCGCGACCGCGACCGCGACCACGACCGCGACCGCGACCGTGA
CCGCGGCCGTGATGAGCGCGATTACAGGCCACCGGCATCTCGCTCACGCG
CCGATAGGGACTACTATCTTGAAAGAGAACGACCACGCGACAGAGACTAC
CCGGATAGGGACCGGGACAGAGACAGGAACAGGGACGACAGAGGAAGGCG
ATCTCGTTACGACGATGATGATGAGGAGGATGACCGTCGTCGTTCCAGGA
CCGACAAAAAGAAGAAGAAGAAGAGCTCTAAGAAGAAGAAGTCCAAGTAC
GAGGAGGAAGATAGCGAAGATTCTTCTGAAGAAGAGTCTGAATATGACTC
TGAAGAAGATTCCGACTCTGACGAAGATGACAGGAGGCGTTCCAAAAAGT
CCAAGGCCTCAAAGAAGAAGAAGGACAAGAAAAAGGATCGCAAGAAAGGG
AAGAAGACACCAGCCTTTGCGGGTACCATCGATGACCTCATCTCGCAGAA
CAACGCATCTGCCCCTTCGATGGGGTCGGGGCCTGCTTCGTTTGGAAATG
TGATTCAAACGCCCATGGGTCCCGCTGTCATGACACCGCAAGGTCTCATG
CCGCCGGCCATGGCCGCCCAAATGATGCAGCGAGGCGGAATGGGCGGTGG
TATGGGTGGTATGGGTACCATGAATGGTATGCAAGGTGGTATGGGAGGTA
TGAGCAAAATGGGTATGCCTGGAGGAGGAATGGGCGGAATGGGCGGAATG
GGTGCCATGAATGGTATGGGCGGAATGGGAGGCGGTGGCATGGGTATGGA
TCAAATGGGCGGAGGTGCTGGGAGTAGTATGGGAATGGGTAATCAGATGG
GCGGAGGTATGGGAATGGATATGGGTGCGAACATGAACGGAGGTATGGGG
GGAATGGGCATGGGAGGAGGAATGGGAATGGGTGGAGGTATGGGACCCGG
AATGGGTATGATGGGAGGTATGGGTGGTGGTATGGCTCCGACACACCCAG
CTCCCTTGGCGCTACCAGCGCCACCTCCCAAGGACGCTACCGGAACTGGA
GCTGGCGGAGACGATGATGATGTACTGAACTCATTAGGACCAATTCAAAC
CTTGAACATTAGTGACAATCCACCGCGCCCAATGGGTGCAGGCGGTATGA
ATGGTGGAATGATGGGTAGTGGTGCGGGCATGGGAATGGGTATGAATGGC
ATGATGGGTGGCGGAGCAATGAATGGTACTATGGGTATGAATGGGACTAT
GGGTACTGGTATGAACGGCTCCATGGGTGGTGGTGGTGGTGGTGGTATGA
TGGGCGCTGGAAACGCTGCGGCAAATCCGTTTGGCGCGGCAGCAGCATCG
GGAGCGGCCTCTACCAATCCGTTTGATGACTTCTGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:353018..354853-

>Ggra10455.t1 ID=Ggra10455.t1|Name=Ggra10455.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000108_pilon:353018..354853- (Gracilaria gracilis GNS1m male)
ATGGCGCGTCGTATTAGCGCACGTGAGGCGGAGGACGCCGAGAGAAAGCT
GAGGCAGCTTACTCGTGCCGGTGCCAATCGTTACTGTGCCGACTGTGGTG
ACTCTGCTCCTAATCATGTCGTTCTGTCGTTGGGAACGTTTGTTTGTTCC
GTGTGTGCCAACATTCACCGCGACGCCAAGCGAAGGGGCGTTCGTAATCT
TGACAGCGCTGCCTTCTCCATCGAAGACGCGTACAGGATGGAGGACCGTG
GAAATGACTTTGCTCGCAAGAGATGGATGGCTCGATGGTCCCCGAGGGAT
TTCCCTGAGCCGCCGCCCGGTGACGTTGAGCGGAAGAAGACACCAGCCTT
TGCGGGTACCATCGATGACCTCATCTCGCAGAACAACGCATCTGCCCCTT
CGATGGGGTCGGGGCCTGCTTCGTTTGGAAATGTGATTCAAACGCCCATG
GGTCCCGCTGTCATGACACCGCAAGGTCTCATGCCGCCGGCCATGGCCGC
CCAAATGATGCAGCGAGGCGGAATGGGCGGTGGTATGGGTGGTATGGGTA
CCATGAATGGTATGCAAGGTGGTATGGGAGGTATGAGCAAAATGGGTATG
CCTGGAGGAGGAATGGGCGGAATGGGCGGAATGGGTGCCATGAATGGTAT
GGGCGGAATGGGAGGCGGTGGCATGGGTATGGATCAAATGGGCGGAGGTG
CTGGGAGTAGTATGGGAATGGGTAATCAGATGGGCGGAGGTATGGGAATG
GATATGGGTGCGAACATGAACGGAGGTATGGGGGGAATGGGCATGGGAGG
AGGAATGGGAATGGGTGGAGGTATGGGACCCGGAATGGGTATGATGGGAG
GTATGGGTGGTGGTATGGCTCCGACACACCCAGCTCCCTTGGCGCTACCA
GCGCCACCTCCCAAGGACGCTACCGGAACTGGAGCTGGCGGAGACGATGA
TGATGTACTGAACTCATTAGGACCAATTCAAACCTTGAACATTAGTGACA
ATCCACCGCGCCCAATGGGTGCAGGCGGTATGAATGGTGGAATGATGGGT
AGTGGTGCGGGCATGGGAATGGGTATGAATGGCATGATGGGTGGCGGAGC
AATGAATGGTACTATGGGTATGAATGGGACTATGGGTACTGGTATGAACG
GCTCCATGGGTGGTGGTGGTGGTGGTGGTATGATGGGCGCTGGAAACGCT
GCGGCAAATCCGTTTGGCGCGGCAGCAGCATCGGGAGCGGCCTCTACCAA
TCCGTTTGATGACTTCTGA
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