Ggra1045.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1045.t1
Unique NameGgra1045.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:974930..975418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO33325
Preferred nameASMTL
PFAMsDimerisation2,Maf,Methyltransf_2
Max annot lvl33208|Metazoa
KEGG koko:K06287
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue2.92e-31
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota,38DF2@33154|Opisthokonta,3BD2W@33208|Metazoa
DescriptionO-methyltransferase-like
COG categoryD
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1045Ggra1045Gracilaria gracilis GNS1m malegenetig00000027_pilon 974930..975418 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1045.t1.start1Ggra1045.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 974930..974932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1045.t1.CDS1Ggra1045.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 974930..975418 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1045.t1.exon1Ggra1045.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 974930..975418 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1045.t1.stop1Ggra1045.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 975416..975418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1045.t1Ggra1045.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 974930..975418 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1045.t1 ID=Ggra1045.t1|Name=Ggra1045.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=163bp
MIIDLPPHLRQERVVLASQSPRRREILQLIGLEFISEASSFAEDLVKSNF
ANLNGYAQKKAEEKALDVWRKHQDVDLVICSDTIVVSEGKILEKLTSEAD
ALQMLRSLSGRWHTVIKAVAFVCKGELRRFCEDAKVCFDNPTDDMISASV
KTGEQMEKAGAY*
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spliced messenger RNA

>Ggra1045.t1 ID=Ggra1045.t1|Name=Ggra1045.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000027_pilon:974930..975418+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCATTGATCTGCCACCGCATCTAAGACAGGAACGAGTGGTTTTGGC
AAGTCAGTCCCCTCGCCGTCGAGAAATTCTTCAACTAATTGGTTTGGAGT
TTATCTCCGAAGCTTCATCTTTTGCAGAGGATTTGGTCAAGTCCAACTTT
GCCAATCTGAACGGATACGCTCAAAAAAAGGCAGAAGAGAAGGCCCTAGA
CGTATGGAGAAAGCATCAGGACGTTGATCTAGTGATCTGTTCCGATACAA
TCGTAGTTTCGGAAGGAAAAATATTGGAGAAGCTTACCTCCGAAGCAGAT
GCTTTACAAATGCTGAGAAGTTTAAGCGGACGATGGCATACCGTGATAAA
AGCCGTAGCTTTTGTTTGCAAAGGGGAACTCAGAAGATTTTGTGAGGATG
CAAAAGTATGCTTCGACAATCCGACAGATGATATGATATCTGCATCCGTG
AAAACTGGGGAGCAAATGGAAAAAGCGGGAGCATACTGA
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protein sequence of Ggra1045.t1

>Ggra1045.t1 ID=Ggra1045.t1|Name=Ggra1045.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=163bp
MIIDLPPHLRQERVVLASQSPRRREILQLIGLEFISEASSFAEDLVKSNF
ANLNGYAQKKAEEKALDVWRKHQDVDLVICSDTIVVSEGKILEKLTSEAD
ALQMLRSLSGRWHTVIKAVAFVCKGELRRFCEDAKVCFDNPTDDMISASV
KTGEQMEKAGAY*
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mRNA from alignment at tig00000027_pilon:974930..975418+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1045.t1 ID=Ggra1045.t1|Name=Ggra1045.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000027_pilon:974930..975418+ (Gracilaria gracilis GNS1m male)
ATGATCATTGATCTGCCACCGCATCTAAGACAGGAACGAGTGGTTTTGGC
AAGTCAGTCCCCTCGCCGTCGAGAAATTCTTCAACTAATTGGTTTGGAGT
TTATCTCCGAAGCTTCATCTTTTGCAGAGGATTTGGTCAAGTCCAACTTT
GCCAATCTGAACGGATACGCTCAAAAAAAGGCAGAAGAGAAGGCCCTAGA
CGTATGGAGAAAGCATCAGGACGTTGATCTAGTGATCTGTTCCGATACAA
TCGTAGTTTCGGAAGGAAAAATATTGGAGAAGCTTACCTCCGAAGCAGAT
GCTTTACAAATGCTGAGAAGTTTAAGCGGACGATGGCATACCGTGATAAA
AGCCGTAGCTTTTGTTTGCAAAGGGGAACTCAGAAGATTTTGTGAGGATG
CAAAAGTATGCTTCGACAATCCGACAGATGATATGATATCTGCATCCGTG
AAAACTGGGGAGCAAATGGAAAAAGCGGGAGCATACTGA
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Coding sequence (CDS) from alignment at tig00000027_pilon:974930..975418+

>Ggra1045.t1 ID=Ggra1045.t1|Name=Ggra1045.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=489bp|location=Sequence derived from alignment at tig00000027_pilon:974930..975418+ (Gracilaria gracilis GNS1m male)
ATGATCATTGATCTGCCACCGCATCTAAGACAGGAACGAGTGGTTTTGGC
AAGTCAGTCCCCTCGCCGTCGAGAAATTCTTCAACTAATTGGTTTGGAGT
TTATCTCCGAAGCTTCATCTTTTGCAGAGGATTTGGTCAAGTCCAACTTT
GCCAATCTGAACGGATACGCTCAAAAAAAGGCAGAAGAGAAGGCCCTAGA
CGTATGGAGAAAGCATCAGGACGTTGATCTAGTGATCTGTTCCGATACAA
TCGTAGTTTCGGAAGGAAAAATATTGGAGAAGCTTACCTCCGAAGCAGAT
GCTTTACAAATGCTGAGAAGTTTAAGCGGACGATGGCATACCGTGATAAA
AGCCGTAGCTTTTGTTTGCAAAGGGGAACTCAGAAGATTTTGTGAGGATG
CAAAAGTATGCTTCGACAATCCGACAGATGATATGATATCTGCATCCGTG
AAAACTGGGGAGCAAATGGAAAAAGCGGGAGCATACTGA
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