Ggra10442.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10442.t1
Unique NameGgra10442.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:322203..322751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007514420.1
PFAMsAnk_2,BAH,Bromodomain,GATA,SnAC
Max annot lvl2759|Eukaryota
KEGG koko:K11647,ko:K11756,ko:K11757,ko:K11786
KEGG Pathwayko04714,ko05225,map04714,map05225
Evalue8.58e-06
EggNOG OGsCOG0553@1|root,KOG0386@2759|Eukaryota
Descriptionaortic smooth muscle cell differentiation
COG categoryKL
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10442Ggra10442Gracilaria gracilis GNS1m malegenetig00000108_pilon 322203..322751 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10442.t1.stop1Ggra10442.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 322203..322205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10442.t1.CDS1Ggra10442.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 322203..322751 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10442.t1.exon1Ggra10442.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 322203..322751 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10442.t1.start1Ggra10442.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 322749..322751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10442.t1Ggra10442.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 322203..322751 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10442.t1 ID=Ggra10442.t1|Name=Ggra10442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=183bp
MTGVLRNRTDDHYPHPPELGKELQGREILMCWKDATWYEAVIINYSPETK
CHTIVYRADDTLETVSLDKCRWILLPRKTRDQGRPILDGAIIDFKHPTDH
INYQAVVYDDSHTGHKLKIAYLSENSTDVLRGQGWRIVRQSPCQLPSCDT
DDDIHLVHDPDLQSSDSPPPSPPRPKRRPRRL*
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spliced messenger RNA

>Ggra10442.t1 ID=Ggra10442.t1|Name=Ggra10442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000108_pilon:322203..322751- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGGAGTGCTGCGAAATCGTACTGATGATCATTACCCACACCCACC
CGAGTTAGGCAAGGAGCTGCAAGGCCGCGAAATCCTCATGTGCTGGAAGG
ATGCCACCTGGTACGAAGCCGTCATTATAAACTATTCCCCCGAAACAAAG
TGTCATACTATTGTGTACCGAGCCGATGACACGTTGGAAACCGTTTCTCT
TGACAAATGCCGCTGGATTCTACTTCCAAGAAAAACCAGAGACCAAGGCA
GGCCCATATTAGATGGCGCAATAATTGACTTTAAACACCCCACAGACCAT
ATAAACTACCAGGCCGTTGTTTACGATGACTCACACACCGGACATAAGCT
CAAGATTGCCTATCTTAGTGAGAACTCCACCGATGTGTTGAGGGGCCAAG
GCTGGAGAATCGTTCGTCAATCTCCTTGCCAATTGCCGTCATGCGACACT
GATGACGATATTCACCTTGTGCATGATCCTGATTTGCAGTCCAGCGATTC
GCCACCACCCTCCCCACCACGCCCAAAGCGAAGGCCCCGGCGACTGTAG
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protein sequence of Ggra10442.t1

>Ggra10442.t1 ID=Ggra10442.t1|Name=Ggra10442.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=183bp
MTGVLRNRTDDHYPHPPELGKELQGREILMCWKDATWYEAVIINYSPETK
CHTIVYRADDTLETVSLDKCRWILLPRKTRDQGRPILDGAIIDFKHPTDH
INYQAVVYDDSHTGHKLKIAYLSENSTDVLRGQGWRIVRQSPCQLPSCDT
DDDIHLVHDPDLQSSDSPPPSPPRPKRRPRRL*
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mRNA from alignment at tig00000108_pilon:322203..322751-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10442.t1 ID=Ggra10442.t1|Name=Ggra10442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000108_pilon:322203..322751- (Gracilaria gracilis GNS1m male)
ATGACGGGAGTGCTGCGAAATCGTACTGATGATCATTACCCACACCCACC
CGAGTTAGGCAAGGAGCTGCAAGGCCGCGAAATCCTCATGTGCTGGAAGG
ATGCCACCTGGTACGAAGCCGTCATTATAAACTATTCCCCCGAAACAAAG
TGTCATACTATTGTGTACCGAGCCGATGACACGTTGGAAACCGTTTCTCT
TGACAAATGCCGCTGGATTCTACTTCCAAGAAAAACCAGAGACCAAGGCA
GGCCCATATTAGATGGCGCAATAATTGACTTTAAACACCCCACAGACCAT
ATAAACTACCAGGCCGTTGTTTACGATGACTCACACACCGGACATAAGCT
CAAGATTGCCTATCTTAGTGAGAACTCCACCGATGTGTTGAGGGGCCAAG
GCTGGAGAATCGTTCGTCAATCTCCTTGCCAATTGCCGTCATGCGACACT
GATGACGATATTCACCTTGTGCATGATCCTGATTTGCAGTCCAGCGATTC
GCCACCACCCTCCCCACCACGCCCAAAGCGAAGGCCCCGGCGACTGTAG
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Coding sequence (CDS) from alignment at tig00000108_pilon:322203..322751-

>Ggra10442.t1 ID=Ggra10442.t1|Name=Ggra10442.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=549bp|location=Sequence derived from alignment at tig00000108_pilon:322203..322751- (Gracilaria gracilis GNS1m male)
ATGACGGGAGTGCTGCGAAATCGTACTGATGATCATTACCCACACCCACC
CGAGTTAGGCAAGGAGCTGCAAGGCCGCGAAATCCTCATGTGCTGGAAGG
ATGCCACCTGGTACGAAGCCGTCATTATAAACTATTCCCCCGAAACAAAG
TGTCATACTATTGTGTACCGAGCCGATGACACGTTGGAAACCGTTTCTCT
TGACAAATGCCGCTGGATTCTACTTCCAAGAAAAACCAGAGACCAAGGCA
GGCCCATATTAGATGGCGCAATAATTGACTTTAAACACCCCACAGACCAT
ATAAACTACCAGGCCGTTGTTTACGATGACTCACACACCGGACATAAGCT
CAAGATTGCCTATCTTAGTGAGAACTCCACCGATGTGTTGAGGGGCCAAG
GCTGGAGAATCGTTCGTCAATCTCCTTGCCAATTGCCGTCATGCGACACT
GATGACGATATTCACCTTGTGCATGATCCTGATTTGCAGTCCAGCGATTC
GCCACCACCCTCCCCACCACGCCCAAAGCGAAGGCCCCGGCGACTGTAG
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