Ggra10436.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10436.t1
Unique NameGgra10436.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length515
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:309596..313580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173027.Mic7113_1317
PFAMsDUF2235
Max annot lvl1117|Cyanobacteria
Evalue8.56e-78
EggNOG OGsCOG3673@1|root,COG3673@2|Bacteria,1G1VC@1117|Cyanobacteria,1H9I8@1150|Oscillatoriales
Description'Conserved protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10436Ggra10436Gracilaria gracilis GNS1m malegenetig00000108_pilon 309596..313580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10436.t1Ggra10436.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 309596..313580 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10436.t1.stop1Ggra10436.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 309596..309598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10436.t1.CDS1Ggra10436.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 309596..310074 -
Ggra10436.t1.CDS2Ggra10436.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 312433..313433 -
Ggra10436.t1.CDS3Ggra10436.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000108_pilon 313516..313580 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10436.t1.exon1Ggra10436.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 309596..310074 -
Ggra10436.t1.exon2Ggra10436.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 312433..313433 -
Ggra10436.t1.exon3Ggra10436.t1.exon3Gracilaria gracilis GNS1m maleexontig00000108_pilon 313516..313580 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10436.t1.intron1Ggra10436.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 310075..312432 -
Ggra10436.t1.intron2Ggra10436.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000108_pilon 313434..313515 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10436.t1.start1Ggra10436.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 313578..313580 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10436.t1 ID=Ggra10436.t1|Name=Ggra10436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=515bp
MPGQVTTPSKRLCVFSDGTWNSPELETLTNICTLARSLSYKCSEGISQVC
YYDQGIGTEGGTVDRFRGGAFGEGIDLNIQQLYTFLAMNYEEGDEIYMFG
YSRGAYTVRSLAGMIHESGLVYRENLDYVQEAYDLYRDNQDVNSADAVDF
RNKYSRRVPIKLLLCFDTVGSLGFPDGLPFPLSMLADDDRYRFHNTELSD
LVENAIHVLSIDEDRKSFSPTFMKPSPHRGPNQVTEVFMPGSHGGVGGGS
SAELKLSKNALRFVLDEMKRRELGVEFSSGDLLPKAYTYDIPPLPERALF
GRYNIIKTISGGENVRDIGSVDRLHETAVRRYRMFEDWRPKAMNPLKDVL
LSLVENAGFDDPTSPFHRCYLKSKYIAVDACILVNSCFETGVCKIQRGEL
ALLTEQEKEACAHLVVEHRFVPVENDSDEFSPGSYIHRFEKRKRTWAISN
DYKNCDFILGSVAEVERLRSTADTILNCNPMEMDALVFESFVFLKVNERF
WDMQMVQQAYDAVR*
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spliced messenger RNA

>Ggra10436.t1 ID=Ggra10436.t1|Name=Ggra10436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000108_pilon:309596..313580- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGGTCAAGTAACCACCCCGTCAAAACGTCTCTGCGTCTTTTCAGA
CGGCACATGGAACAGTCCAGAGCTAGAGACCCTCACAAACATATGCACCT
TAGCACGCTCATTGTCATACAAGTGTTCAGAAGGCATCTCACAAGTCTGT
TATTATGACCAAGGAATTGGTACCGAAGGTGGTACCGTGGATCGTTTTCG
CGGTGGCGCATTCGGCGAAGGTATTGATCTAAATATTCAACAGTTGTACA
CCTTTCTGGCCATGAACTATGAAGAAGGTGATGAAATATACATGTTTGGT
TACTCACGCGGCGCTTATACTGTGCGTTCGCTTGCTGGTATGATACACGA
ATCAGGCCTTGTTTACCGAGAGAACCTTGACTATGTTCAAGAGGCATACG
ATTTGTATCGCGACAATCAAGACGTCAACTCTGCTGATGCTGTAGACTTC
AGGAACAAGTACTCGAGGAGAGTTCCAATCAAACTACTGCTTTGCTTTGA
TACCGTTGGATCTTTGGGATTTCCTGATGGTCTGCCGTTCCCGTTATCTA
TGCTTGCAGATGATGATCGATACCGTTTTCATAATACCGAACTCAGTGAT
CTTGTAGAAAACGCTATTCATGTGTTGAGTATTGACGAAGACAGGAAGTC
GTTTTCTCCTACTTTTATGAAACCAAGCCCCCATAGAGGTCCGAATCAGG
TGACCGAGGTATTCATGCCGGGATCGCATGGCGGAGTTGGTGGTGGAAGC
TCAGCTGAGCTCAAGCTGTCAAAGAATGCCCTCCGGTTTGTGTTGGACGA
GATGAAGAGAAGAGAACTCGGGGTTGAGTTCAGTAGTGGGGACTTGCTTC
CGAAAGCATACACCTATGACATCCCACCTTTACCAGAACGGGCTTTATTC
GGAAGGTACAATATCATCAAGACCATTTCTGGCGGGGAGAACGTTCGTGA
CATTGGCAGTGTGGATCGACTTCATGAAACTGCTGTCCGCAGGTATCGCA
TGTTTGAAGATTGGAGACCAAAGGCAATGAATCCTCTCAAGGACGTTTTG
CTGAGTCTTGTGGAAAACGCTGGTTTTGATGACCCAACATCTCCTTTTCA
TCGATGTTACTTGAAGAGCAAGTATATTGCGGTTGATGCTTGTATATTGG
TGAACTCCTGCTTTGAAACTGGAGTTTGCAAGATACAGCGCGGAGAACTT
GCATTGCTGACTGAACAAGAAAAAGAAGCTTGCGCCCACTTGGTAGTCGA
ACATAGGTTTGTTCCCGTTGAGAATGATTCAGATGAGTTTTCTCCAGGGA
GTTATATTCATCGATTTGAGAAGCGAAAGCGTACATGGGCAATAAGTAAT
GACTATAAGAACTGTGATTTTATTCTTGGCTCTGTTGCTGAGGTTGAAAG
GCTGCGGTCCACTGCAGACACTATATTGAACTGTAACCCAATGGAGATGG
ATGCGCTCGTATTTGAGTCATTCGTATTTCTGAAGGTGAATGAAAGATTC
TGGGACATGCAAATGGTGCAACAGGCTTATGATGCAGTAAGATGA
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protein sequence of Ggra10436.t1

>Ggra10436.t1 ID=Ggra10436.t1|Name=Ggra10436.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=515bp
MPGQVTTPSKRLCVFSDGTWNSPELETLTNICTLARSLSYKCSEGISQVC
YYDQGIGTEGGTVDRFRGGAFGEGIDLNIQQLYTFLAMNYEEGDEIYMFG
YSRGAYTVRSLAGMIHESGLVYRENLDYVQEAYDLYRDNQDVNSADAVDF
RNKYSRRVPIKLLLCFDTVGSLGFPDGLPFPLSMLADDDRYRFHNTELSD
LVENAIHVLSIDEDRKSFSPTFMKPSPHRGPNQVTEVFMPGSHGGVGGGS
SAELKLSKNALRFVLDEMKRRELGVEFSSGDLLPKAYTYDIPPLPERALF
GRYNIIKTISGGENVRDIGSVDRLHETAVRRYRMFEDWRPKAMNPLKDVL
LSLVENAGFDDPTSPFHRCYLKSKYIAVDACILVNSCFETGVCKIQRGEL
ALLTEQEKEACAHLVVEHRFVPVENDSDEFSPGSYIHRFEKRKRTWAISN
DYKNCDFILGSVAEVERLRSTADTILNCNPMEMDALVFESFVFLKVNERF
WDMQMVQQAYDAVR*
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mRNA from alignment at tig00000108_pilon:309596..313580-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10436.t1 ID=Ggra10436.t1|Name=Ggra10436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3985bp|location=Sequence derived from alignment at tig00000108_pilon:309596..313580- (Gracilaria gracilis GNS1m male)
ATGCCTGGTCAAGTAACCACCCCGTCAAAACGTCTCTGCGTCTTTTCAGA
CGGCACATGGAACAGGTAAGTTTGTGCCATATTCCACTTCACCTGGTAGA
ACAACCAGTTTGATTCATTTGAAACATTCATTCTAATATTCTCGTAGTCC
AGAGCTAGAGACCCTCACAAACATATGCACCTTAGCACGCTCATTGTCAT
ACAAGTGTTCAGAAGGCATCTCACAAGTCTGTTATTATGACCAAGGAATT
GGTACCGAAGGTGGTACCGTGGATCGTTTTCGCGGTGGCGCATTCGGCGA
AGGTATTGATCTAAATATTCAACAGTTGTACACCTTTCTGGCCATGAACT
ATGAAGAAGGTGATGAAATATACATGTTTGGTTACTCACGCGGCGCTTAT
ACTGTGCGTTCGCTTGCTGGTATGATACACGAATCAGGCCTTGTTTACCG
AGAGAACCTTGACTATGTTCAAGAGGCATACGATTTGTATCGCGACAATC
AAGACGTCAACTCTGCTGATGCTGTAGACTTCAGGAACAAGTACTCGAGG
AGAGTTCCAATCAAACTACTGCTTTGCTTTGATACCGTTGGATCTTTGGG
ATTTCCTGATGGTCTGCCGTTCCCGTTATCTATGCTTGCAGATGATGATC
GATACCGTTTTCATAATACCGAACTCAGTGATCTTGTAGAAAACGCTATT
CATGTGTTGAGTATTGACGAAGACAGGAAGTCGTTTTCTCCTACTTTTAT
GAAACCAAGCCCCCATAGAGGTCCGAATCAGGTGACCGAGGTATTCATGC
CGGGATCGCATGGCGGAGTTGGTGGTGGAAGCTCAGCTGAGCTCAAGCTG
TCAAAGAATGCCCTCCGGTTTGTGTTGGACGAGATGAAGAGAAGAGAACT
CGGGGTTGAGTTCAGTAGTGGGGACTTGCTTCCGAAAGCATACACCTATG
ACATCCCACCTTTACCAGAACGGGCTTTATTCGGAAGGTACAATATCATC
AAGACCATTTCTGGCGGGGAGAACGTTCGTGACATTGGCAGTGTGGATCG
ACTTCATGAAACTGCTGTCCGCAGGTATCGCATGTTTGAAGATTGGAGAC
CAAAGGCAATGAATCCTCTCAAGGACGTTTTGCTGAGTCTTGTGGAAAGT
TCGTAGAGCGAAACTGCGAAAAGGACAGGCATTCTTCAGTTCTACGCGTT
TCAACATTTTAGATGATAAGAGTGGATTACATATGGCATCGAGAGCGGTT
CTCGGCCGTCAGAGAAGTTCTCTGAGAGAACCCTTTACAAATATCTGAGT
AAACGTCTCCCCTTCTAACTTCTTAAATTGAACGACAGCGGCGTGCGAGA
CATGCAAATGATCTCGGGGACAACCCAGATACACTGCGGTGAAGAAGGAC
GTGGAGCACGTGCTGTTTCGATGCCCCTTGACCAACGCGGCGCGTCGCAA
TGAGTTGCCAACCGTGCAAGAGAGGAAAGATATGTCGCTAGTAGAGATGA
TAAGACAATGGCCGCTGAAGTTTTTGGCCTTTTTTAAGAGAGAGGATTAC
CTGTAGGGTAATTCTCCTGCCGTCTCGGAATCAGGGGCGACAGGCCATAA
TAAAGAAGAAAGAAGAAGAACCCAGATACAGTTTTCGTATGGCCTTCGGC
GACTGAGTCGAAGTTCATCGTAGCGTAGTGTAGGAGGGACAGTTCACAAG
CAGTATTGGCACAAGGGGTCTACCCGGGAGCTGGAGGGGAGCTCCTGGGT
TAATCACGTGCCTTTATATAAGGATACTGGGGCGACCGTTCGGCTAACTA
TGACGTATAACTACGGATAACTACGGATAAAAGTAACACCAAGTTGTACG
TCATGGGAAGCTAGGGAGAAGACACCAACAACAGTATCTACCGAAGGGGG
TAGATACAGTAGATCCAGTAAATTATGGACTGGAATTCCGCCTTCGGGAA
AATAACTCGCCCTCGGGATCAAAATTTCCCTCGTAGCCCATGCGATAACC
CTTACAAAGAATATAACCGTTGACTTGGCTAATGCACTGTTTTTAAACAC
ACTTCTCAGTTTTGACCTAGATAAAAAGAAAACACCCCCAGTCGGCCGGC
GGCTACGGCTTGAGCATAACTATAACTAACACTACAAGGGTAACTGCTCT
CAAGTTGGTCTATCGTTCATCTTGCATGAAACTTTTCTTTCTGGTCTTAC
AGGTTTTATGGCATGATGAAGAACAGCAAACCAGATCCTACCCCTAAAGA
GCTGGTAGTTGTCCTCACGCAACTGCTCAGGGAGGAAACCAAGACTTTCT
GTCCCAAGTCCGGAAAGCTTTCCACAAAGACTTATCTTGTGCACAAATGC
CCGGGCCAATTCTGTACGGACAATAACTCTGAGATTCGGTTTGAGAAAGG
AACAGGATACAATAACCCTTTTCGACATCTTAAATCCTGTTTAGCTAATG
GAAATGTGTCCGAGTTGCATTCAATGTATTATGCAAACCTCAAGGCCAAA
CAGGAAGCGAAGAGCGAAGCATTCAAGCTATTTGCACCACAAAAGCAGCC
ACGATTCGAAGCTCTGTATGATTACATTCGAGTTGTAATTCTCAACTGTT
TACCACTTGGAATTGTCGAAGATGCACGCTTTCGGTCCTTCTCTAAGCAC
GAAGAAGCGTTTTCCGAAAAAACTGTTCGAAAAGTATTGACGAAGTTGAA
AGAACTTGTGGAAAAAAAGATTGCAGAAGAACTACAAGCAGCACGAAGAG
GCTCTATCTTGCACGGCTGTTGGCCACGCGGAGTTGTACATTATCTGGGT
TTGTTTGCGTCCTACATCAAGGAATCGCATGATATCGTGAATGGTACTGC
ACAACATTCCGCGCGCAAAGAGATGGCTTTGCTTTCGTGCTCTCCAATCG
CTACATATGATTCGGAGATTACAGAGCAGCCCTTAGAAGATGAGGGTATC
ACTTTTTCGGCTGAAATCCGTGCACAACATATTATGTCTGTGTTCCGATT
CTACGGCATTGCCTTTTCTTCATGGGCGGTCTGTCAGACGGCGGAAAACT
GCAAGATTAACAGAAAGGTCGCCCTACTGCTTGGAATTCCCCATGTAGCT
TGTAAGAGTCATTTACTAAACCTAGAAGTTAATCAAATGACCGGGAACTC
TGCTGATCTTAAACGCACATTAGATATGGTGCACGACACAATGGTATATT
GCAAGCAAAGCTTGGGTAATACGGCAATCTTGAGAACCATTGTTGCATTC
CAGCCCATTCTGCATAACCCAACGAGATGGTCTGGAAAGTGTTTCATGCT
GCAATGGTTCCTTCACGTTCGTGACAAGCTCCTGGAAGAGCCCAGCTTGG
ACTCTGTTGTAAACAGTAGTCCATTGTTCAAGACAAAAGTGGAAAGATAT
TGCAAGCATCTGTTCGAAATTGACTACGCCACAAAGCACTTGGAAACCTC
TAAACTGTCGTTGGGAGAATGCCAGGAAGTTCTTAATATGCTGATCGATG
AAATAGACGCTGGTTTTGATGACCCAACATCTCCTTTTCATCGATGTTAC
TTGAAGAGCAAGTATATTGCGGTTGATGCTTGTATATTGGTGAACTCCTG
CTTTGAAACTGGAGTTTGCAAGATACAGCGCGGAGAACTTGCATTGCTGA
CTGAACAAGAAAAAGAAGCTTGCGCCCACTTGGTAGTCGAACATAGGTTT
GTTCCCGTTGAGAATGATTCAGATGAGTTTTCTCCAGGGAGTTATATTCA
TCGATTTGAGAAGCGAAAGCGTACATGGGCAATAAGTAATGACTATAAGA
ACTGTGATTTTATTCTTGGCTCTGTTGCTGAGGTTGAAAGGCTGCGGTCC
ACTGCAGACACTATATTGAACTGTAACCCAATGGAGATGGATGCGCTCGT
ATTTGAGTCATTCGTATTTCTGAAGGTGAATGAAAGATTCTGGGACATGC
AAATGGTGCAACAGGCTTATGATGCAGTAAGATGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:309596..313580-

>Ggra10436.t1 ID=Ggra10436.t1|Name=Ggra10436.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00000108_pilon:309596..313580- (Gracilaria gracilis GNS1m male)
ATGCCTGGTCAAGTAACCACCCCGTCAAAACGTCTCTGCGTCTTTTCAGA
CGGCACATGGAACAGTCCAGAGCTAGAGACCCTCACAAACATATGCACCT
TAGCACGCTCATTGTCATACAAGTGTTCAGAAGGCATCTCACAAGTCTGT
TATTATGACCAAGGAATTGGTACCGAAGGTGGTACCGTGGATCGTTTTCG
CGGTGGCGCATTCGGCGAAGGTATTGATCTAAATATTCAACAGTTGTACA
CCTTTCTGGCCATGAACTATGAAGAAGGTGATGAAATATACATGTTTGGT
TACTCACGCGGCGCTTATACTGTGCGTTCGCTTGCTGGTATGATACACGA
ATCAGGCCTTGTTTACCGAGAGAACCTTGACTATGTTCAAGAGGCATACG
ATTTGTATCGCGACAATCAAGACGTCAACTCTGCTGATGCTGTAGACTTC
AGGAACAAGTACTCGAGGAGAGTTCCAATCAAACTACTGCTTTGCTTTGA
TACCGTTGGATCTTTGGGATTTCCTGATGGTCTGCCGTTCCCGTTATCTA
TGCTTGCAGATGATGATCGATACCGTTTTCATAATACCGAACTCAGTGAT
CTTGTAGAAAACGCTATTCATGTGTTGAGTATTGACGAAGACAGGAAGTC
GTTTTCTCCTACTTTTATGAAACCAAGCCCCCATAGAGGTCCGAATCAGG
TGACCGAGGTATTCATGCCGGGATCGCATGGCGGAGTTGGTGGTGGAAGC
TCAGCTGAGCTCAAGCTGTCAAAGAATGCCCTCCGGTTTGTGTTGGACGA
GATGAAGAGAAGAGAACTCGGGGTTGAGTTCAGTAGTGGGGACTTGCTTC
CGAAAGCATACACCTATGACATCCCACCTTTACCAGAACGGGCTTTATTC
GGAAGGTACAATATCATCAAGACCATTTCTGGCGGGGAGAACGTTCGTGA
CATTGGCAGTGTGGATCGACTTCATGAAACTGCTGTCCGCAGGTATCGCA
TGTTTGAAGATTGGAGACCAAAGGCAATGAATCCTCTCAAGGACGTTTTG
CTGAGTCTTGTGGAAAACGCTGGTTTTGATGACCCAACATCTCCTTTTCA
TCGATGTTACTTGAAGAGCAAGTATATTGCGGTTGATGCTTGTATATTGG
TGAACTCCTGCTTTGAAACTGGAGTTTGCAAGATACAGCGCGGAGAACTT
GCATTGCTGACTGAACAAGAAAAAGAAGCTTGCGCCCACTTGGTAGTCGA
ACATAGGTTTGTTCCCGTTGAGAATGATTCAGATGAGTTTTCTCCAGGGA
GTTATATTCATCGATTTGAGAAGCGAAAGCGTACATGGGCAATAAGTAAT
GACTATAAGAACTGTGATTTTATTCTTGGCTCTGTTGCTGAGGTTGAAAG
GCTGCGGTCCACTGCAGACACTATATTGAACTGTAACCCAATGGAGATGG
ATGCGCTCGTATTTGAGTCATTCGTATTTCTGAAGGTGAATGAAAGATTC
TGGGACATGCAAATGGTGCAACAGGCTTATGATGCAGTAAGATGA
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