Ggra10426.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10426.t1
Unique NameGgra10426.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:290144..291130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756067.MicvaDRAFT_4562
Preferred namespeE
PFAMsAdoMet_dc,Spermine_synt_N,Spermine_synth
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00021,RC00053
KEGG koko:K00797
KEGG ReactionR01920,R02869,R08359
KEGG Pathwayko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100
KEGG ModuleM00034,M00133
Evalue5.94e-89
EggNOG OGsCOG0421@1|root,COG0421@2|Bacteria,1G36Y@1117|Cyanobacteria,1H85B@1150|Oscillatoriales
EC2.5.1.16
DescriptionCatalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10426Ggra10426Gracilaria gracilis GNS1m malegenetig00000108_pilon 290144..291130 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10426.t1.stop1Ggra10426.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 290144..290146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10426.t1.CDS1Ggra10426.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 290144..291130 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10426.t1.exon1Ggra10426.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 290144..291130 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10426.t1.start1Ggra10426.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 291128..291130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10426.t1Ggra10426.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 290144..291130 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10426.t1 ID=Ggra10426.t1|Name=Ggra10426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MGLEKAAPSASTEPVQESAPNMWIVEQITPYDAYHHGVKQLLLSKNTKFQ
AMIIADTGAYGRALFLDGRVQTTEGDEPFYHEPLVHLPCLVHSNPENVLI
LGGADGGAAREALRWHSVKSVVVVDIDGEAVDACRKYLPNIARGSLDDPR
CELIVGDALGYIDRNQTSFDVIICDLTDPVEDGPSLRLFTSEFFSKLKQT
LTPMGVVSLMGGPTSLRESKILFPRTCATLSSVFKSVRPSQVFVPTYGSP
LGIIIATDNTQPLPEAEELDLRIENSVKGEMHVLDGASVHGHFAIPRCLR
KAVVEETGILTIRNQVHAFGKGILSNKG*
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spliced messenger RNA

>Ggra10426.t1 ID=Ggra10426.t1|Name=Ggra10426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000108_pilon:290144..291130- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTCGAAAAGGCCGCTCCATCAGCTTCAACTGAGCCAGTGCAAGA
ATCCGCGCCCAATATGTGGATAGTGGAACAAATAACCCCATACGATGCAT
ACCACCACGGTGTAAAGCAGCTTCTGCTTTCCAAGAACACCAAGTTCCAA
GCCATGATCATTGCCGACACTGGAGCGTATGGGCGAGCACTCTTTCTAGA
TGGACGTGTCCAAACCACGGAGGGTGATGAACCGTTTTACCACGAACCTC
TGGTTCATTTGCCGTGTCTCGTGCATTCTAATCCTGAAAACGTGCTGATC
TTGGGCGGCGCTGATGGCGGTGCTGCCAGAGAGGCTCTGAGATGGCATTC
TGTAAAATCTGTCGTCGTCGTTGACATCGATGGAGAAGCAGTGGATGCTT
GTCGCAAATATCTACCGAACATTGCCCGAGGCTCTCTGGATGATCCAAGG
TGCGAACTCATTGTGGGCGACGCTTTGGGCTACATAGACCGAAACCAAAC
CTCCTTCGATGTCATTATCTGTGATTTAACAGATCCTGTGGAAGACGGTC
CAAGTCTACGCCTGTTCACCAGCGAATTCTTCTCGAAACTGAAGCAAACC
CTGACGCCCATGGGAGTGGTTTCACTCATGGGTGGTCCCACATCCTTGAG
GGAAAGTAAAATATTGTTCCCACGAACGTGTGCAACTCTATCATCTGTCT
TCAAGTCTGTACGCCCGTCTCAAGTATTTGTGCCAACTTATGGTTCACCT
CTTGGCATAATCATTGCCACGGATAATACTCAACCGCTACCCGAAGCCGA
AGAGCTGGATTTGAGAATAGAAAACTCCGTGAAGGGAGAAATGCATGTGC
TAGATGGCGCCTCGGTCCATGGTCATTTTGCTATTCCTCGGTGTCTGAGG
AAAGCAGTGGTGGAGGAAACAGGAATTCTCACGATTCGAAATCAGGTTCA
TGCGTTTGGCAAAGGCATTCTGAGCAACAAAGGATGA
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protein sequence of Ggra10426.t1

>Ggra10426.t1 ID=Ggra10426.t1|Name=Ggra10426.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MGLEKAAPSASTEPVQESAPNMWIVEQITPYDAYHHGVKQLLLSKNTKFQ
AMIIADTGAYGRALFLDGRVQTTEGDEPFYHEPLVHLPCLVHSNPENVLI
LGGADGGAAREALRWHSVKSVVVVDIDGEAVDACRKYLPNIARGSLDDPR
CELIVGDALGYIDRNQTSFDVIICDLTDPVEDGPSLRLFTSEFFSKLKQT
LTPMGVVSLMGGPTSLRESKILFPRTCATLSSVFKSVRPSQVFVPTYGSP
LGIIIATDNTQPLPEAEELDLRIENSVKGEMHVLDGASVHGHFAIPRCLR
KAVVEETGILTIRNQVHAFGKGILSNKG*
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mRNA from alignment at tig00000108_pilon:290144..291130-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10426.t1 ID=Ggra10426.t1|Name=Ggra10426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000108_pilon:290144..291130- (Gracilaria gracilis GNS1m male)
ATGGGACTCGAAAAGGCCGCTCCATCAGCTTCAACTGAGCCAGTGCAAGA
ATCCGCGCCCAATATGTGGATAGTGGAACAAATAACCCCATACGATGCAT
ACCACCACGGTGTAAAGCAGCTTCTGCTTTCCAAGAACACCAAGTTCCAA
GCCATGATCATTGCCGACACTGGAGCGTATGGGCGAGCACTCTTTCTAGA
TGGACGTGTCCAAACCACGGAGGGTGATGAACCGTTTTACCACGAACCTC
TGGTTCATTTGCCGTGTCTCGTGCATTCTAATCCTGAAAACGTGCTGATC
TTGGGCGGCGCTGATGGCGGTGCTGCCAGAGAGGCTCTGAGATGGCATTC
TGTAAAATCTGTCGTCGTCGTTGACATCGATGGAGAAGCAGTGGATGCTT
GTCGCAAATATCTACCGAACATTGCCCGAGGCTCTCTGGATGATCCAAGG
TGCGAACTCATTGTGGGCGACGCTTTGGGCTACATAGACCGAAACCAAAC
CTCCTTCGATGTCATTATCTGTGATTTAACAGATCCTGTGGAAGACGGTC
CAAGTCTACGCCTGTTCACCAGCGAATTCTTCTCGAAACTGAAGCAAACC
CTGACGCCCATGGGAGTGGTTTCACTCATGGGTGGTCCCACATCCTTGAG
GGAAAGTAAAATATTGTTCCCACGAACGTGTGCAACTCTATCATCTGTCT
TCAAGTCTGTACGCCCGTCTCAAGTATTTGTGCCAACTTATGGTTCACCT
CTTGGCATAATCATTGCCACGGATAATACTCAACCGCTACCCGAAGCCGA
AGAGCTGGATTTGAGAATAGAAAACTCCGTGAAGGGAGAAATGCATGTGC
TAGATGGCGCCTCGGTCCATGGTCATTTTGCTATTCCTCGGTGTCTGAGG
AAAGCAGTGGTGGAGGAAACAGGAATTCTCACGATTCGAAATCAGGTTCA
TGCGTTTGGCAAAGGCATTCTGAGCAACAAAGGATGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:290144..291130-

>Ggra10426.t1 ID=Ggra10426.t1|Name=Ggra10426.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000108_pilon:290144..291130- (Gracilaria gracilis GNS1m male)
ATGGGACTCGAAAAGGCCGCTCCATCAGCTTCAACTGAGCCAGTGCAAGA
ATCCGCGCCCAATATGTGGATAGTGGAACAAATAACCCCATACGATGCAT
ACCACCACGGTGTAAAGCAGCTTCTGCTTTCCAAGAACACCAAGTTCCAA
GCCATGATCATTGCCGACACTGGAGCGTATGGGCGAGCACTCTTTCTAGA
TGGACGTGTCCAAACCACGGAGGGTGATGAACCGTTTTACCACGAACCTC
TGGTTCATTTGCCGTGTCTCGTGCATTCTAATCCTGAAAACGTGCTGATC
TTGGGCGGCGCTGATGGCGGTGCTGCCAGAGAGGCTCTGAGATGGCATTC
TGTAAAATCTGTCGTCGTCGTTGACATCGATGGAGAAGCAGTGGATGCTT
GTCGCAAATATCTACCGAACATTGCCCGAGGCTCTCTGGATGATCCAAGG
TGCGAACTCATTGTGGGCGACGCTTTGGGCTACATAGACCGAAACCAAAC
CTCCTTCGATGTCATTATCTGTGATTTAACAGATCCTGTGGAAGACGGTC
CAAGTCTACGCCTGTTCACCAGCGAATTCTTCTCGAAACTGAAGCAAACC
CTGACGCCCATGGGAGTGGTTTCACTCATGGGTGGTCCCACATCCTTGAG
GGAAAGTAAAATATTGTTCCCACGAACGTGTGCAACTCTATCATCTGTCT
TCAAGTCTGTACGCCCGTCTCAAGTATTTGTGCCAACTTATGGTTCACCT
CTTGGCATAATCATTGCCACGGATAATACTCAACCGCTACCCGAAGCCGA
AGAGCTGGATTTGAGAATAGAAAACTCCGTGAAGGGAGAAATGCATGTGC
TAGATGGCGCCTCGGTCCATGGTCATTTTGCTATTCCTCGGTGTCTGAGG
AAAGCAGTGGTGGAGGAAACAGGAATTCTCACGATTCGAAATCAGGTTCA
TGCGTTTGGCAAAGGCATTCTGAGCAACAAAGGATGA
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