Ggra10412.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10412.t1
Unique NameGgra10412.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:252368..253009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3656.XP_008444760.1
PFAMsThioredoxin
Max annot lvl35493|Streptophyta
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
GOsGO:0003674,GO:0003824,GO:0004791,GO:0004857,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009628,GO:0009636,GO:0009987,GO:0010496,GO:0010497,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0030234,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043086,GO:0044092,GO:0044424,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
Evalue3.18e-14
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota,37UQH@33090|Viridiplantae,3GITZ@35493|Streptophyta,4JUBW@91835|fabids
DescriptionBelongs to the thioredoxin family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10412Ggra10412Gracilaria gracilis GNS1m malegenetig00000108_pilon 252368..253009 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10412.t1.start1Ggra10412.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 252368..252370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10412.t1.CDS1Ggra10412.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 252368..253009 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10412.t1.exon1Ggra10412.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 252368..253009 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10412.t1.stop1Ggra10412.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 253007..253009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10412.t1Ggra10412.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 252368..253009 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10412.t1 ID=Ggra10412.t1|Name=Ggra10412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MCAFVPCSPPLALDAPPPPQSPLRQRARSWAASTTRRATRATLASPPSPP
SPSKQPPAPSPPFVPGTLLTLATPEQFDALAAQADAEGALIVLDFVAAWC
RKCTYLLAALSKLTPSFAHVYFAKVDVNKMRRLPRQFRIRSVPTFVFVLR
ARELDRFVAADKPAVVADRLRHMLRTLISVHVNRPHSSSLDLPPSPPQPP
SPPQPPSSPPPPQ*
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spliced messenger RNA

>Ggra10412.t1 ID=Ggra10412.t1|Name=Ggra10412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000108_pilon:252368..253009+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgtgcgcgttcgtgccgtgctccccgcccctggcgcttgacgcgccgcc
gccgccgcagtcgccgctgcgacagcgcgcgcgctcgtgggcggcgtcga
cgacgcgtcgcgccacgcgcgccacgctggcgtcgccgccgtcgccgccg
tcgccgtccaagcagccgccggcgccgtcgccgccgTTTGTGCCGGGCAC
GCTGCTCACGCTGGCGACGCCCGAGCAGTTCGACGCGCTGGCGGCGCAGG
CGGACGCGGAGGGCGCGCTCATCGTGCTGGACTTTGTGGCCGCGTGGTGT
CGCAAGTGCACCTACCTGCTCGCCGCGTTGAGCAAGCTCACGCCGTCGTT
TGCACACGTTTACTTTGCAAAGGTTGACGTCAACAAGATGCGCCGACTGC
CGCGCCAGTTCCGCATTCGCAGCGTGCCCACGTTTGTGTTTGTGTTGCGC
GCGCGCGAGTTGGACCGCTTTGTGGCTGCCGATAAGCCAGCCGTCGTGGC
CGACAGGTTGCGCCATATGCTGCGTACCTTGATCAGCGTGCATGTCAATC
GCCCACACTCATCATCGTTGGACTTgccgccttcgccgccgcagccgcct
tcgccgccgcagccgccttcgtcaccaccgccaccgcagtag
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protein sequence of Ggra10412.t1

>Ggra10412.t1 ID=Ggra10412.t1|Name=Ggra10412.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MCAFVPCSPPLALDAPPPPQSPLRQRARSWAASTTRRATRATLASPPSPP
SPSKQPPAPSPPFVPGTLLTLATPEQFDALAAQADAEGALIVLDFVAAWC
RKCTYLLAALSKLTPSFAHVYFAKVDVNKMRRLPRQFRIRSVPTFVFVLR
ARELDRFVAADKPAVVADRLRHMLRTLISVHVNRPHSSSLDLPPSPPQPP
SPPQPPSSPPPPQ*
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mRNA from alignment at tig00000108_pilon:252368..253009+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10412.t1 ID=Ggra10412.t1|Name=Ggra10412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000108_pilon:252368..253009+ (Gracilaria gracilis GNS1m male)
atgtgcgcgttcgtgccgtgctccccgcccctggcgcttgacgcgccgcc
gccgccgcagtcgccgctgcgacagcgcgcgcgctcgtgggcggcgtcga
cgacgcgtcgcgccacgcgcgccacgctggcgtcgccgccgtcgccgccg
tcgccgtccaagcagccgccggcgccgtcgccgccgTTTGTGCCGGGCAC
GCTGCTCACGCTGGCGACGCCCGAGCAGTTCGACGCGCTGGCGGCGCAGG
CGGACGCGGAGGGCGCGCTCATCGTGCTGGACTTTGTGGCCGCGTGGTGT
CGCAAGTGCACCTACCTGCTCGCCGCGTTGAGCAAGCTCACGCCGTCGTT
TGCACACGTTTACTTTGCAAAGGTTGACGTCAACAAGATGCGCCGACTGC
CGCGCCAGTTCCGCATTCGCAGCGTGCCCACGTTTGTGTTTGTGTTGCGC
GCGCGCGAGTTGGACCGCTTTGTGGCTGCCGATAAGCCAGCCGTCGTGGC
CGACAGGTTGCGCCATATGCTGCGTACCTTGATCAGCGTGCATGTCAATC
GCCCACACTCATCATCGTTGGACTTgccgccttcgccgccgcagccgcct
tcgccgccgcagccgccttcgtcaccaccgccaccgcagtag
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Coding sequence (CDS) from alignment at tig00000108_pilon:252368..253009+

>Ggra10412.t1 ID=Ggra10412.t1|Name=Ggra10412.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000108_pilon:252368..253009+ (Gracilaria gracilis GNS1m male)
atgtgcgcgttcgtgccgtgctccccgcccctggcgcttgacgcgccgcc
gccgccgcagtcgccgctgcgacagcgcgcgcgctcgtgggcggcgtcga
cgacgcgtcgcgccacgcgcgccacgctggcgtcgccgccgtcgccgccg
tcgccgtccaagcagccgccggcgccgtcgccgccgTTTGTGCCGGGCAC
GCTGCTCACGCTGGCGACGCCCGAGCAGTTCGACGCGCTGGCGGCGCAGG
CGGACGCGGAGGGCGCGCTCATCGTGCTGGACTTTGTGGCCGCGTGGTGT
CGCAAGTGCACCTACCTGCTCGCCGCGTTGAGCAAGCTCACGCCGTCGTT
TGCACACGTTTACTTTGCAAAGGTTGACGTCAACAAGATGCGCCGACTGC
CGCGCCAGTTCCGCATTCGCAGCGTGCCCACGTTTGTGTTTGTGTTGCGC
GCGCGCGAGTTGGACCGCTTTGTGGCTGCCGATAAGCCAGCCGTCGTGGC
CGACAGGTTGCGCCATATGCTGCGTACCTTGATCAGCGTGCATGTCAATC
GCCCACACTCATCATCGTTGGACTTgccgccttcgccgccgcagccgcct
tcgccgccgcagccgccttcgtcaccaccgccaccgcagtag
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