Ggra10399.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10399.t1
Unique NameGgra10399.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:222750..224117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010558289.1
Preferred namePRR7
PFAMsCCT,Response_reg
Max annot lvl35493|Streptophyta
KEGG koko:K12129
KEGG Pathwayko04712,map04712
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006355,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010017,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048511,GO:0048519,GO:0048523,GO:0048579,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048586,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0080090,GO:0097159,GO:0104004,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000028,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
Evalue9.81e-07
EggNOG OGsCOG5641@1|root,KOG1601@2759|Eukaryota,37J2W@33090|Viridiplantae,3G8UI@35493|Streptophyta,3HXNJ@3699|Brassicales
DescriptionTwo-component response
COG categoryK
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10399Ggra10399Gracilaria gracilis GNS1m malegenetig00000108_pilon 222750..224117 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10399.t1.stop1Ggra10399.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 222750..222752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10399.t1.CDS1Ggra10399.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 222750..224117 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10399.t1.exon1Ggra10399.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 222750..224117 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10399.t1.start1Ggra10399.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 224115..224117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10399.t1Ggra10399.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 222750..224117 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10399.t1 ID=Ggra10399.t1|Name=Ggra10399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp
MEFLQTPDLARGHWSSNTPTRALRSTLTPAVPGASPTPLHGVHGASTAAA
AHPTLTPAALDGVPNATPKGTFAVTPFMAQLDRAGIKSSFQSLFSPHPDN
VSATPALLQRKHASGLTPFLNAATTPGLVPPSPSLLPNFAASPGQHVPMP
SPGGGDPMQRTPYLAAAAREAVRREFMNMPSYMAPGSEHQQHMDSDAERK
VPEKTQSPKYSMQVVANTGVQVNSTTPRKGAAEPSHTESTQPGTGHSSSP
SPSDAKVPEKTEGNSPHQKNKASEQSNSEQKGFAQRNEHYPQQPQMHQFF
MPPTQAPPGMMVLGQHAPMMMAHPPGMLPPPGMMVFPGAQPMMPQQGMFM
HPPQALGPQRVVPAKQETASERKARVENEKQDLIREFKKKTREAALVRFR
QKRRERRFGKLIRYDCRKKLADARPRVKGRFVRLKIADDDADSESAQVVP
NLKSR*
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spliced messenger RNA

>Ggra10399.t1 ID=Ggra10399.t1|Name=Ggra10399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000108_pilon:222750..224117- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTCTTACAGACTCCAGACCTCGCGCGGGGCCACTGGAGCTCCAA
CACACCAACTCGCGCGCTTCGCTCAACGCTCACGCCCGCCGTGCCCGGCG
CGTCGCCCACGCCACTGCATGGCGTGCATGGCGCGTCCACCGCCGCCGCG
GCGCACCCGACCTTGACTCCGGCCGCGCTGGACGGAGTTCCGAATGCTAC
ACCCAAGGGCACCTTCGCAGTGACGCCGTTCATGGCGCAGCTGGATCGCG
CCGGCATAAAGAGCTCGTTTCAGAGCCTGTTCTCGCCGCACCCGGACAAC
GTGTCCGCCACCCCAGCGCTGTTACAGAGGAAGCATGCATCCGGACTCAC
ACCTTTTCTGAACGCTGCCACCACACCTGGGCTGGTGCCACCCTCACCAT
CCTTGTTGCCCAACTTTGCAGCCAGTCCTGGCCAACATGTTCCGATGCCG
TCACCCGGCGGAGGTGATCCCATGCAGAGAACGCCCTACCTGGCCGCAGC
GGCGAGGGAAGCCGTGCGGAGGGAGTTTATGAACATGCCTAGCTACATGG
CGCCTGGCTCGGAACACCAACAGCACATGGATTCGGACGCGGAGCGAAAG
GTACCTGAGAAGACACAGTCGCCGAAATACTCCATGCAGGTTGTGGCAAA
CACCGGTGTACAGGTCAACTCCACCACCCCCAGGAAGGGCGCCGCAGAAC
CGTCGCACACGGAGAGTACCCAGCCCGGTACCGGTCACAGTTCCTCGCCC
AGTCCAAGTGACGCCAAAGTACCCGAGAAGACAGAGGGCAACTCACCGCA
TCAGAAGAACAAAGCTTCTGAGCAATCGAACAGCGAGCAAAAGGGGTTTG
CACAGAGGAATGAACACTATCCGCAACAACCTCAAATGCACCAATTCTTC
ATGCCCCCCACACAGGCGCCACCGGGCATGATGGTTCTTGGACAGCACGC
GCCCATGATGATGGCACACCCTCCTGGTATGCTCCCGCCACCTGGCATGA
TGGTTTTCCCGGGCGCACAGCCGATGATGCCGCAACAGGGTATGTTCATG
CATCCGCCCCAGGCACTTGGGCCGCAGCGCGTGGTGCCCGCCAAGCAGGA
GACCGCCTCGGAGCGAAAGGCACGTGTGGAGAATGAGAAACAGGATCTCA
TTAGAGAGTTTAAGAAGAAGACTAGGGAAGCGGCGCTAGTTCGGTTTAGG
CAGAAGCGACGGGAGAGACGGTTCGGCAAGCTCATCAGGTATGACTGCCG
AAAGAAGCTGGCCGACGCACGGCCGCGTGTGAAGGGCCGCTTCGTAAGAC
TGAAGATCGCTGATGATGATGCTGATTCGGAATCTGCACAAGTTGTGCCC
AATCTTAAGTCTCGGTGA
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protein sequence of Ggra10399.t1

>Ggra10399.t1 ID=Ggra10399.t1|Name=Ggra10399.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=456bp
MEFLQTPDLARGHWSSNTPTRALRSTLTPAVPGASPTPLHGVHGASTAAA
AHPTLTPAALDGVPNATPKGTFAVTPFMAQLDRAGIKSSFQSLFSPHPDN
VSATPALLQRKHASGLTPFLNAATTPGLVPPSPSLLPNFAASPGQHVPMP
SPGGGDPMQRTPYLAAAAREAVRREFMNMPSYMAPGSEHQQHMDSDAERK
VPEKTQSPKYSMQVVANTGVQVNSTTPRKGAAEPSHTESTQPGTGHSSSP
SPSDAKVPEKTEGNSPHQKNKASEQSNSEQKGFAQRNEHYPQQPQMHQFF
MPPTQAPPGMMVLGQHAPMMMAHPPGMLPPPGMMVFPGAQPMMPQQGMFM
HPPQALGPQRVVPAKQETASERKARVENEKQDLIREFKKKTREAALVRFR
QKRRERRFGKLIRYDCRKKLADARPRVKGRFVRLKIADDDADSESAQVVP
NLKSR*
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mRNA from alignment at tig00000108_pilon:222750..224117-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10399.t1 ID=Ggra10399.t1|Name=Ggra10399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000108_pilon:222750..224117- (Gracilaria gracilis GNS1m male)
ATGGAGTTCTTACAGACTCCAGACCTCGCGCGGGGCCACTGGAGCTCCAA
CACACCAACTCGCGCGCTTCGCTCAACGCTCACGCCCGCCGTGCCCGGCG
CGTCGCCCACGCCACTGCATGGCGTGCATGGCGCGTCCACCGCCGCCGCG
GCGCACCCGACCTTGACTCCGGCCGCGCTGGACGGAGTTCCGAATGCTAC
ACCCAAGGGCACCTTCGCAGTGACGCCGTTCATGGCGCAGCTGGATCGCG
CCGGCATAAAGAGCTCGTTTCAGAGCCTGTTCTCGCCGCACCCGGACAAC
GTGTCCGCCACCCCAGCGCTGTTACAGAGGAAGCATGCATCCGGACTCAC
ACCTTTTCTGAACGCTGCCACCACACCTGGGCTGGTGCCACCCTCACCAT
CCTTGTTGCCCAACTTTGCAGCCAGTCCTGGCCAACATGTTCCGATGCCG
TCACCCGGCGGAGGTGATCCCATGCAGAGAACGCCCTACCTGGCCGCAGC
GGCGAGGGAAGCCGTGCGGAGGGAGTTTATGAACATGCCTAGCTACATGG
CGCCTGGCTCGGAACACCAACAGCACATGGATTCGGACGCGGAGCGAAAG
GTACCTGAGAAGACACAGTCGCCGAAATACTCCATGCAGGTTGTGGCAAA
CACCGGTGTACAGGTCAACTCCACCACCCCCAGGAAGGGCGCCGCAGAAC
CGTCGCACACGGAGAGTACCCAGCCCGGTACCGGTCACAGTTCCTCGCCC
AGTCCAAGTGACGCCAAAGTACCCGAGAAGACAGAGGGCAACTCACCGCA
TCAGAAGAACAAAGCTTCTGAGCAATCGAACAGCGAGCAAAAGGGGTTTG
CACAGAGGAATGAACACTATCCGCAACAACCTCAAATGCACCAATTCTTC
ATGCCCCCCACACAGGCGCCACCGGGCATGATGGTTCTTGGACAGCACGC
GCCCATGATGATGGCACACCCTCCTGGTATGCTCCCGCCACCTGGCATGA
TGGTTTTCCCGGGCGCACAGCCGATGATGCCGCAACAGGGTATGTTCATG
CATCCGCCCCAGGCACTTGGGCCGCAGCGCGTGGTGCCCGCCAAGCAGGA
GACCGCCTCGGAGCGAAAGGCACGTGTGGAGAATGAGAAACAGGATCTCA
TTAGAGAGTTTAAGAAGAAGACTAGGGAAGCGGCGCTAGTTCGGTTTAGG
CAGAAGCGACGGGAGAGACGGTTCGGCAAGCTCATCAGGTATGACTGCCG
AAAGAAGCTGGCCGACGCACGGCCGCGTGTGAAGGGCCGCTTCGTAAGAC
TGAAGATCGCTGATGATGATGCTGATTCGGAATCTGCACAAGTTGTGCCC
AATCTTAAGTCTCGGTGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:222750..224117-

>Ggra10399.t1 ID=Ggra10399.t1|Name=Ggra10399.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00000108_pilon:222750..224117- (Gracilaria gracilis GNS1m male)
ATGGAGTTCTTACAGACTCCAGACCTCGCGCGGGGCCACTGGAGCTCCAA
CACACCAACTCGCGCGCTTCGCTCAACGCTCACGCCCGCCGTGCCCGGCG
CGTCGCCCACGCCACTGCATGGCGTGCATGGCGCGTCCACCGCCGCCGCG
GCGCACCCGACCTTGACTCCGGCCGCGCTGGACGGAGTTCCGAATGCTAC
ACCCAAGGGCACCTTCGCAGTGACGCCGTTCATGGCGCAGCTGGATCGCG
CCGGCATAAAGAGCTCGTTTCAGAGCCTGTTCTCGCCGCACCCGGACAAC
GTGTCCGCCACCCCAGCGCTGTTACAGAGGAAGCATGCATCCGGACTCAC
ACCTTTTCTGAACGCTGCCACCACACCTGGGCTGGTGCCACCCTCACCAT
CCTTGTTGCCCAACTTTGCAGCCAGTCCTGGCCAACATGTTCCGATGCCG
TCACCCGGCGGAGGTGATCCCATGCAGAGAACGCCCTACCTGGCCGCAGC
GGCGAGGGAAGCCGTGCGGAGGGAGTTTATGAACATGCCTAGCTACATGG
CGCCTGGCTCGGAACACCAACAGCACATGGATTCGGACGCGGAGCGAAAG
GTACCTGAGAAGACACAGTCGCCGAAATACTCCATGCAGGTTGTGGCAAA
CACCGGTGTACAGGTCAACTCCACCACCCCCAGGAAGGGCGCCGCAGAAC
CGTCGCACACGGAGAGTACCCAGCCCGGTACCGGTCACAGTTCCTCGCCC
AGTCCAAGTGACGCCAAAGTACCCGAGAAGACAGAGGGCAACTCACCGCA
TCAGAAGAACAAAGCTTCTGAGCAATCGAACAGCGAGCAAAAGGGGTTTG
CACAGAGGAATGAACACTATCCGCAACAACCTCAAATGCACCAATTCTTC
ATGCCCCCCACACAGGCGCCACCGGGCATGATGGTTCTTGGACAGCACGC
GCCCATGATGATGGCACACCCTCCTGGTATGCTCCCGCCACCTGGCATGA
TGGTTTTCCCGGGCGCACAGCCGATGATGCCGCAACAGGGTATGTTCATG
CATCCGCCCCAGGCACTTGGGCCGCAGCGCGTGGTGCCCGCCAAGCAGGA
GACCGCCTCGGAGCGAAAGGCACGTGTGGAGAATGAGAAACAGGATCTCA
TTAGAGAGTTTAAGAAGAAGACTAGGGAAGCGGCGCTAGTTCGGTTTAGG
CAGAAGCGACGGGAGAGACGGTTCGGCAAGCTCATCAGGTATGACTGCCG
AAAGAAGCTGGCCGACGCACGGCCGCGTGTGAAGGGCCGCTTCGTAAGAC
TGAAGATCGCTGATGATGATGCTGATTCGGAATCTGCACAAGTTGTGCCC
AATCTTAAGTCTCGGTGA
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