Ggra10395.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10395.t1
Unique NameGgra10395.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:214349..215347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2J4S7
PFAMsEamA
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016020,GO:0016021,GO:0031224,GO:0044424,GO:0044425,GO:0044464
Evalue1.14e-26
EggNOG OGsCOG0697@1|root,KOG4510@2759|Eukaryota,395GA@33154|Opisthokonta,3NUM2@4751|Fungi,1GSM9@112252|Fungi incertae sedis
DescriptionEamA-like transporter family
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10395Ggra10395Gracilaria gracilis GNS1m malegenetig00000108_pilon 214349..215347 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10395.t1.start1Ggra10395.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 214349..214351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10395.t1.CDS1Ggra10395.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 214349..215347 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10395.t1.exon1Ggra10395.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 214349..215347 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10395.t1.stop1Ggra10395.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 215345..215347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10395.t1Ggra10395.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 214349..215347 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10395.t1 ID=Ggra10395.t1|Name=Ggra10395.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MPSSNVPPDSITITEISSLLPAKEKDTQPFPSQSEDSSSAFNGLIWIALA
AICFSFMTTAVRLSSTRFDFPTSAAVLLPSIVHLVLSTFVLQSIIHISPL
DLTPRNCCLLAVRGLFGTFAMVLVFKSLSFLPTGEVTAIFSFTPILTMFF
SRMTLNEATSIWDVVCAPTGVVGIWLIAEPGTGDHQYIAGTVLLLMAACF
AALGFICVRGMGDQVHFMLSVFALGAIGLPVTVILGGKEAFYHILFNPKG
TSVVLLGSLAAFFAQSCLNKGLQMCRAGQGVIMKNLEVPSAYALGILVLD
EKPTLKRFLGSVAVVSAVILVSVRRLRAPGPS*
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spliced messenger RNA

>Ggra10395.t1 ID=Ggra10395.t1|Name=Ggra10395.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000108_pilon:214349..215347+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCATCGAATGTTCCACCGGATTCTATAACAATAACTGAGATCAG
TTCTCTTCTGCCAGCAAAAGAAAAGGACACCCAACCTTTCCCTTCGCAAT
CTGAAGATTCTTCTTCTGCCTTTAATGGTTTAATCTGGATTGCATTGGCA
GCTATATGCTTCTCTTTCATGACTACTGCTGTTCGTCTAAGCTCAACTAG
ATTTGATTTCCCGACATCTGCCGCTGTCCTGTTGCCTTCCATCGTGCACT
TGGTCCTTTCCACCTTTGTGCTACAAAGCATTATCCATATATCTCCACTA
GATCTAACCCCGCGAAACTGTTGTTTGCTAGCTGTTCGGGGTCTTTTTGG
AACGTTTGCAATGGTTTTGGTTTTCAAGTCTCTATCATTCTTGCCTACAG
GAGAGGTTACAGCTATTTTCTCGTTCACCCCAATTTTAACGATGTTCTTC
TCAAGAATGACTTTGAACGAAGCCACCAGCATCTGGGATGTGGTGTGTGC
CCCTACTGGAGTCGTCGGAATCTGGCTAATCGCAGAACCTGGTACAGGCG
ACCATCAGTATATCGCAGGTACAGTTCTGCTTTTGATGGCGGCATGCTTT
GCCGCCTTGGGCTTTATATGTGTTCGAGGAATGGGTGACCAAGTACATTT
TATGCTCTCCGTGTTTGCACTTGGCGCTATAGGCCTCCCAGTTACGGTTA
TTCTTGGAGGAAAAGAAGCTTTCTATCATATTCTGTTCAATCCAAAGGGT
ACCAGTGTTGTTTTACTAGGTTCATTGGCAGCCTTTTTCGCTCAAAGCTG
TCTTAACAAGGGTCTGCAGATGTGCAGAGCAGGCCAGGGTGTAATCATGA
AGAACCTTGAAGTACCATCTGCTTACGCGTTGGGCATATTGGTGCTGGAT
GAGAAGCCGACCCTGAAAAGATTCCTCGGATCCGTGGCAGTTGTGTCTGC
AGTAATTCTTGTCAGCGTCCGAAGGCTACGGGCCCCAGGGCCAAGTTAA
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protein sequence of Ggra10395.t1

>Ggra10395.t1 ID=Ggra10395.t1|Name=Ggra10395.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MPSSNVPPDSITITEISSLLPAKEKDTQPFPSQSEDSSSAFNGLIWIALA
AICFSFMTTAVRLSSTRFDFPTSAAVLLPSIVHLVLSTFVLQSIIHISPL
DLTPRNCCLLAVRGLFGTFAMVLVFKSLSFLPTGEVTAIFSFTPILTMFF
SRMTLNEATSIWDVVCAPTGVVGIWLIAEPGTGDHQYIAGTVLLLMAACF
AALGFICVRGMGDQVHFMLSVFALGAIGLPVTVILGGKEAFYHILFNPKG
TSVVLLGSLAAFFAQSCLNKGLQMCRAGQGVIMKNLEVPSAYALGILVLD
EKPTLKRFLGSVAVVSAVILVSVRRLRAPGPS*
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mRNA from alignment at tig00000108_pilon:214349..215347+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10395.t1 ID=Ggra10395.t1|Name=Ggra10395.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000108_pilon:214349..215347+ (Gracilaria gracilis GNS1m male)
ATGCCATCATCGAATGTTCCACCGGATTCTATAACAATAACTGAGATCAG
TTCTCTTCTGCCAGCAAAAGAAAAGGACACCCAACCTTTCCCTTCGCAAT
CTGAAGATTCTTCTTCTGCCTTTAATGGTTTAATCTGGATTGCATTGGCA
GCTATATGCTTCTCTTTCATGACTACTGCTGTTCGTCTAAGCTCAACTAG
ATTTGATTTCCCGACATCTGCCGCTGTCCTGTTGCCTTCCATCGTGCACT
TGGTCCTTTCCACCTTTGTGCTACAAAGCATTATCCATATATCTCCACTA
GATCTAACCCCGCGAAACTGTTGTTTGCTAGCTGTTCGGGGTCTTTTTGG
AACGTTTGCAATGGTTTTGGTTTTCAAGTCTCTATCATTCTTGCCTACAG
GAGAGGTTACAGCTATTTTCTCGTTCACCCCAATTTTAACGATGTTCTTC
TCAAGAATGACTTTGAACGAAGCCACCAGCATCTGGGATGTGGTGTGTGC
CCCTACTGGAGTCGTCGGAATCTGGCTAATCGCAGAACCTGGTACAGGCG
ACCATCAGTATATCGCAGGTACAGTTCTGCTTTTGATGGCGGCATGCTTT
GCCGCCTTGGGCTTTATATGTGTTCGAGGAATGGGTGACCAAGTACATTT
TATGCTCTCCGTGTTTGCACTTGGCGCTATAGGCCTCCCAGTTACGGTTA
TTCTTGGAGGAAAAGAAGCTTTCTATCATATTCTGTTCAATCCAAAGGGT
ACCAGTGTTGTTTTACTAGGTTCATTGGCAGCCTTTTTCGCTCAAAGCTG
TCTTAACAAGGGTCTGCAGATGTGCAGAGCAGGCCAGGGTGTAATCATGA
AGAACCTTGAAGTACCATCTGCTTACGCGTTGGGCATATTGGTGCTGGAT
GAGAAGCCGACCCTGAAAAGATTCCTCGGATCCGTGGCAGTTGTGTCTGC
AGTAATTCTTGTCAGCGTCCGAAGGCTACGGGCCCCAGGGCCAAGTTAA
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Coding sequence (CDS) from alignment at tig00000108_pilon:214349..215347+

>Ggra10395.t1 ID=Ggra10395.t1|Name=Ggra10395.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000108_pilon:214349..215347+ (Gracilaria gracilis GNS1m male)
ATGCCATCATCGAATGTTCCACCGGATTCTATAACAATAACTGAGATCAG
TTCTCTTCTGCCAGCAAAAGAAAAGGACACCCAACCTTTCCCTTCGCAAT
CTGAAGATTCTTCTTCTGCCTTTAATGGTTTAATCTGGATTGCATTGGCA
GCTATATGCTTCTCTTTCATGACTACTGCTGTTCGTCTAAGCTCAACTAG
ATTTGATTTCCCGACATCTGCCGCTGTCCTGTTGCCTTCCATCGTGCACT
TGGTCCTTTCCACCTTTGTGCTACAAAGCATTATCCATATATCTCCACTA
GATCTAACCCCGCGAAACTGTTGTTTGCTAGCTGTTCGGGGTCTTTTTGG
AACGTTTGCAATGGTTTTGGTTTTCAAGTCTCTATCATTCTTGCCTACAG
GAGAGGTTACAGCTATTTTCTCGTTCACCCCAATTTTAACGATGTTCTTC
TCAAGAATGACTTTGAACGAAGCCACCAGCATCTGGGATGTGGTGTGTGC
CCCTACTGGAGTCGTCGGAATCTGGCTAATCGCAGAACCTGGTACAGGCG
ACCATCAGTATATCGCAGGTACAGTTCTGCTTTTGATGGCGGCATGCTTT
GCCGCCTTGGGCTTTATATGTGTTCGAGGAATGGGTGACCAAGTACATTT
TATGCTCTCCGTGTTTGCACTTGGCGCTATAGGCCTCCCAGTTACGGTTA
TTCTTGGAGGAAAAGAAGCTTTCTATCATATTCTGTTCAATCCAAAGGGT
ACCAGTGTTGTTTTACTAGGTTCATTGGCAGCCTTTTTCGCTCAAAGCTG
TCTTAACAAGGGTCTGCAGATGTGCAGAGCAGGCCAGGGTGTAATCATGA
AGAACCTTGAAGTACCATCTGCTTACGCGTTGGGCATATTGGTGCTGGAT
GAGAAGCCGACCCTGAAAAGATTCCTCGGATCCGTGGCAGTTGTGTCTGC
AGTAATTCTTGTCAGCGTCCGAAGGCTACGGGCCCCAGGGCCAAGTTAA
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