Ggra10394.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10394.t1
Unique NameGgra10394.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:203627..211740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10394Ggra10394Gracilaria gracilis GNS1m malegenetig00000108_pilon 203627..211740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10394.t1Ggra10394.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 203627..211740 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10394.t1.start1Ggra10394.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 203627..203629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10394.t1.CDS1Ggra10394.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 203627..204123 +
Ggra10394.t1.CDS2Ggra10394.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 211422..211740 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10394.t1.exon1Ggra10394.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 203627..204123 +
Ggra10394.t1.exon2Ggra10394.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 211422..211740 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10394.t1.intron1Ggra10394.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 204124..211421 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10394.t1.stop1Ggra10394.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 211738..211740 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10394.t1 ID=Ggra10394.t1|Name=Ggra10394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=272bp
MSPSSSSHSPPPPPPPPLPPLLPPAAHEVDHPLRSDPLNELPDAVRVPRV
RRRASPRPRVSSSSSPPPPFSPLPSRARPPAVASIAAAPPSPDQLSEQVS
SLLHDHRQRDAHDPLLHHLAQRVVAPPPPPAGHAYAADMHQVLAACDASE
RASHSDGVMDRSDLTLMQPPNPTRRPTLSSRLSRTVPQYIVRLAHEPSNG
LHFVVRHAQSRTAPALTGISQLLRRRSREISIDIIDATDAAAILGEDMTK
ASDTLQRIDEILKNVLTEDRD*
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spliced messenger RNA

>Ggra10394.t1 ID=Ggra10394.t1|Name=Ggra10394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000108_pilon:203627..211740+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGTCGTCCTCCTCGCACTcgccgccgccgccgccgccgccgcc
gctgccgccgTTGCTGCCGCCCGCCGCGCACGAGGTCGACCACCCGCTGC
GCTCCGACCCGCTCAACGAGCTGCCGGAtgccgtgcgcgtgccgcgcgtg
cgccgccgcgcgtcgccgcgcccacgcgtgtcgtcgtcgtcgtcgcCGCC
GCCGCCGTTTTCGCCATTGCCGTCGCGTGCGCGCCCTCCCGCCGTCGCGT
CCATCGCCGCCGCGCCGCCGTCGCCCGACCAGCTGTCCGAGCAAGTCAGC
AGCCTGCTGCACGACCACCGCCAGCGCGATGCGCACGACCCGCTGCTGCA
CCACCTCGCGCAGCGCGTGGTCGCGCCACCGCCGCCGCCGGCCGGCCACG
CGTACGCCGCGGACATGCACCAAGTGCTGGCCGCGTGCGACGCCAGCGAG
CGCGCCTCGCACTCAGACGGCGTCATGGATCGCTCCGACCTcacgctTAT
GCAACCGCCAAATCCTACGCGAAGACCAACTCTGTCGTCGCGTCTGTCGC
GAACCGTCCCGCAATACATTGTGCGCCTCGCGCATGAACCTTCAAATGGC
CTGCACTTCGTCGTGCGTCACGCTCAGTCGAGAACTGCACCAGCGCTCAC
AGGGATTTCGCAGTTGCTACGCCGAAGAAGCCGCGAGATATCGATTGATA
TCATTGACGCCACTGATGCCGCCGCCATTCTGGGCGAAGATATGACGAAG
GCGTCGGATACTTTGCAGAGAATCGATGAAATCCTAAAGAATGTCTTGAC
GGAAGACAGGGATTAG
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protein sequence of Ggra10394.t1

>Ggra10394.t1 ID=Ggra10394.t1|Name=Ggra10394.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MSPSSSSHSPPPPPPPPLPPLLPPAAHEVDHPLRSDPLNELPDAVRVPRV
RRRASPRPRVSSSSSPPPPFSPLPSRARPPAVASIAAAPPSPDQLSEQVS
SLLHDHRQRDAHDPLLHHLAQRVVAPPPPPAGHAYAADMHQVLAACDASE
RASHSDGVMDRSDLTLMQPPNPTRRPTLSSRLSRTVPQYIVRLAHEPSNG
LHFVVRHAQSRTAPALTGISQLLRRRSREISIDIIDATDAAAILGEDMTK
ASDTLQRIDEILKNVLTEDRD*
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mRNA from alignment at tig00000108_pilon:203627..211740+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10394.t1 ID=Ggra10394.t1|Name=Ggra10394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=8114bp|location=Sequence derived from alignment at tig00000108_pilon:203627..211740+ (Gracilaria gracilis GNS1m male)
ATGTCGCCGTCGTCCTCCTCGCACTcgccgccgccgccgccgccgccgcc
gctgccgccgTTGCTGCCGCCCGCCGCGCACGAGGTCGACCACCCGCTGC
GCTCCGACCCGCTCAACGAGCTGCCGGAtgccgtgcgcgtgccgcgcgtg
cgccgccgcgcgtcgccgcgcccacgcgtgtcgtcgtcgtcgtcgcCGCC
GCCGCCGTTTTCGCCATTGCCGTCGCGTGCGCGCCCTCCCGCCGTCGCGT
CCATCGCCGCCGCGCCGCCGTCGCCCGACCAGCTGTCCGAGCAAGTCAGC
AGCCTGCTGCACGACCACCGCCAGCGCGATGCGCACGACCCGCTGCTGCA
CCACCTCGCGCAGCGCGTGGTCGCGCCACCGCCGCCGCCGGCCGGCCACG
CGTACGCCGCGGACATGCACCAAGTGCTGGCCGCGTGCGACGCCAGCGAG
CGCGCCTCGCACTCAGACGGCGTCATGGATCGCTCCGACCTcacgctgtt
cgccgcgcccgcgcaccgcgggctggccgctggcgtcttcgtcgtgcgct
cgcgtcgtaactgggccatcgtgtccacgcccacaccggacgattactac
ctggtgcgccgctccatcgccgactttctgtggttgcacgacagcctgcg
cgcgaggaacgagggcgtcatcgtgccgctgctgccgccgctcagcgttg
cggggcgcgtcaagcacggctttgcgtacgagcacgagcgtctgcgcggg
ctgcagacctttctgaggcgcgttgctacccacgccgtgctgtccaccag
cgacgagctgctggcgtttctcggcgcgctgggcgacgacgagtggctca
agatccgccgcgaggccgtcagccatgagagctccatcacgtcggcgctg
ttcggctcgtcggccgacgagaacgcctggcaccgcctctcgcactgggg
cgagaagctgctgtggcagaccgcgcgccgcgtcaacaacgcgctcgtgt
ggtttctggagcgcgacgcgccggacgccgccgtgcacgactcggccgaa
gcgcgtgtcgaacggctgcatacgtatgtcaaggagctgggcgtgtcgct
ggccagcgtgcgacatgccgccgagaaggtgcacaagcagagggacgctg
agcgcagctgcgcgctgtccatgcagaacgcgctgcgcgagctgggcacg
cgcgagggcggcaagctggggctcaacttggcgcacgtcacgctgcagat
tcccgccgagggcgatcgccattcgccgcagttgtgccatccgggtggtg
gtgccgatgatggaagcgccattgtcgttgctgccaatcgcgtgcttggt
gcccaggtgcatggcgccactgtatcggcgttcgactcgcccccttcgcg
agagaagctgcgtcgctctccgtcggattcggatgtgcgctcgcgacgcg
tggcgtttgcgtccccacaacgctcgcggtcgatgggcgaccgcgcgggc
gaagcccatcatggagcgcttgatcacccacacaacggagtgacgattgc
cctgcccgttgcacgcgttgtggacgacgtcttcagggattatgaagaaa
gggcaaagggcgctcagcgcatcatgaacgcgagaagagaggaacaggat
gcgtatgagcacgctgttgccgtgtatacaaagctccgtgaccagctcga
gagccgcacgggcagcatgtgggatggcaggacggttgcatccaatgaga
gcttggagggtttgaaaaccgatgtgcatagagcgtcaaaccgattgaaa
gagattcgagagcggtacaagaaagtagctctgtctaccaccgatgaatt
gagacggttgcgcaacgacatgcacgaggacttgtgtgaagcgcttcacg
gaatggctgttgaatatgcacgacaacatgccgcacatgccgaggcctgg
aagtccctgtcgcattgtgtgaatgagtttcgaagaagttctaagacaga
tgccacttccagcccaccaagtggatcaacttcacgcagtacgttccgaa
actaacttggtcatttgtgcgtgcaccttttccggaatgattgcaggttt
tggatgacgatgtactacaacaacaacaacaactactactactactacta
ctactactactactactactactactttctcactggatttcacttaacta
taatgtaaatgtaaatgtatatttgtcggagccaccctttaagcatactt
tagggggagcagatgatggaggaacggtactaactctagctagacatgtg
tctattctagctagtagtagacatatgttcgagatcagcccttgcccttt
ctttatctggacaacaaaatgttctgcgaaagtagaatccgcggcttgta
gctgagaatcaagttcggccagcacttttgcgtaacaactctgaataagc
tttcgacattcgctccccttttgtttctggtgatactacacccacagttt
cattctcaacccacagaagttcactgtccctaattctattcgtccgtgca
ggcttatgacgtctccaaagaatgccagaggatggtctgtgcactgggga
acgcagctccgaaagcatgtcatggccgtgctgtacttcgctctcttcac
tggcttcatgaggattatcaatttcattggtgctatgttccgattctggc
ttctttccttcttttccagtcagagagattcccaaatgattcgtcgcaaa
gctgtccatgacttgttccagttctggccggctcattggttctaaaccaa
gcatctttgccgcctctatcttggcagcttcaacatcgttaattttgaca
gacaatgacccctcccaaagggcaatgccagttataagaagcttttgagc
tgcccctctgtggctcaatggagcgggcgtgacgtagattacagccccaa
cttccagctgtcctccacaggtgtcttcgctcttgtgctttgttcgacga
aagtacccaaaggactcgtgtgatccatcgacattggcaagcacatgcac
cgttagattcactagactaagatctatggctgttacggggggcggagtaa
atggttctcttccacccatcatattcagtgcagcatgacgtcctgtagaa
cgtgcgtaatctgagctccaccgcgctatatgtgattgtgcggccgagga
actcaattcaactgctgacccagctacataaatgtcgctcgccaccgcta
gctcggcattggctgtaaatcctcctaccccacgagacaggtttggtgct
tcaatcggtatgtttgatgttatcgttggagcaaatactacgtgatcagt
cctgaagtctataattgagaatgaatcaaagacagtaccgatgtgcacct
cggcttcgataccgccaaccgcatcgccaagagcatttctagctacaaca
tatcttaccgttgaataagataaagaatctatccctccgtcgctttgcca
agacaatcttgcaataatgtcttgtgatacataccgggggagatatcgag
ctagaaatgatggttctgagtatgaaaatgttacgtcggctccctgtgct
atcaagcaagcaccaactattggggacatccaaccaccgccaaccacagt
catgtgggcgcgatcaacacctgttgcactttgtagacgagcattctgtt
gtaacacctcatcaattcgtccccaatcacaaacactctgggcaccactg
acgaggcgctctgcgtcacgggatacaacttttccaatcggaatggcggg
cattgtgctgccaactgcaataagacatcgcttaaatgaaatctcatccc
cattgtcaagcgttgcagtgcgattcgttgcatcaatcgatttgacgctt
ggtcctatgagaagttcaggttcttgagatgaagattggataaacggtat
cttcttcatgaccatagagaagaggctgtcttccaccgttctttcgcgta
tcatttgcgcccacccagtttttggcatagcgtgatgacttctcaactct
ggcgacacgagaatgagatcatgcgcttgtttctgatgcacaaaggtctt
gagcgcttcttgggccgctacgcctcctccacagatgagatattcataat
ccttccgcgccgggtgtgtcgttggttgatttgaccccacatgctccgct
gcagcgaaagcggtcccaattagactgagagacccacctaggaccgcaat
gtaggaacaagtaaagtcatgaaatgaaaacttagatcttgatcttccgc
gcggcaaaaggacaggcagtgtcgcacgccacattctatttcgtatgtgc
ttggtttttgatacggactatgatcgagataccgtggtaatcggagatct
tcaaaaagtcctgtcgagtctgtgcccatcggcaagctgctgtgcgcgca
tgtattgcgtatattgtcacttgttaagcaaagaaccatggccgtctcca
aagccgcgagctagctagactgttactccataatggctgtggatatgcga
gataatggacacagcgatcagcttcaatgagtgtccgttcctaacaccac
tgtgtgttatgatcataaacaaggagcaccagacagggtgactaaaaaag
ccttgtgacaaaatttccaaacacgtaagcgaacaggggcaggagttctc
caaataagtGGTGACCTTCTAGCGGtcttgttgaatggcccgtctcaggc
ctcaaccccattctcgaagacggacaatgacgtctgccatgaagagcagt
aacgcaattctcgttatccagagacatctggttcgactttcctcagtgag
cttatcagttgaaggataatgtgcatgacatcacgctgagcaaccgaaag
ggattgtacgaccttgtcggagtcgccttcactttcgtacgtcacgtact
ttgggagagatagatatgatgatacgcatgcaatcagaatctttggctcc
caatgaggatcccatttgcttttcacttcggcaaggaacttcttggacgc
cctttgaaacactgtgaagatgagttctccaatcaggttttgaagagtac
tcagctgacttcgaagcttcggcgcgagaccaccgcttttcgccagagtc
atcaccgcaagataacaactaatactgttctggagaattgcgaaaagggt
atcctccgtcttagagcacttcatgatttggatcatagagctcgctgagc
atatttgcagacgaacattgttcatggggctcatggttgcaatcatgtcg
cggagtacgacgtcaatattttcacccaacccacctgactgaaatatcat
aactcgccccaatgctctacaggcgcagcaccgaaggttcagggattctg
tattgctttcaagcagctgacgcagaagctgtatctccgactctatctcc
aagggaaactctttcgaactgaagctcttctgttctaaactcttctgtac
gattatgttacaggcaatcagaccaactgcagccgtcttgtttgcttctt
cacttgcacggtccgatgatgacttgacggcagaggcagctctaaggctg
cttgactctcttagaaccttgatggcgaagttgtttcctttggtaatgat
atgcagaacgtcgtctgtaacaagatgagggaattgctttatcaagtttt
ccatcattcgtgtcatggaagacatgcaaaactttgttacctgtgctccg
ctgttctcaggatgttccaatacattgcagatcagtgctaaggtatcctc
tgcaaaattcggttccacgtcgagatgtgcataagcgattgctcgcacac
acgccgcaagtacttgaccatcccgaagcatgatgaagtgcttcatcttg
tgggcggcatctttagcgagagcatcaatatcctcaccgcgcctgtgagg
tggagcaaaagagacagtcactgcgtgaaattggaacagtgattgaacaa
cggcaactgcagaggttcgcaacactcggtcatagctttcaatactactc
ttaacgagagtgtgataaacatcgatcacgagcggtacatattcagctat
gtcttctcctttcgcactcgattgctgatcttgtaaacaagaagtaagga
aagtagagaacacgcgaaccgtatgtaaagcaacctcagaagttgcgttc
atatctcgcagataacctttgattgtgatccaaacacatgagaaaaagcc
gcacctcatgtgaaccagcgagcgaaaggcaaccagtagttccgcaaccg
gttggtttgggtgcagtgaccccgatatttgcgatgaaacccaggtgagg
aagtttggttctaatatagaaacagagcatgaaagtgcgttggccagagc
gctggcacatgcagcacgggacgtcatatcagtttcggtttgatcgaggg
ctcttcgaagaagcgattgcagtaatgcctgtacggagggtgctgtcatt
gcgggcgcgggcattgcggagaacaactgtgccgtgagacgacctaactt
cgcaactatcaccccgttcgattcttttggtataacactcgacaaaactg
aaaacaaagctctgcaacagttcaggagacgagaactggatggcgtgaaa
gctgcggaggtctgctttgaaacgataaacgagttttgaatgaatgtttt
gctagacgcgataagggcagtaattgcagtcaccgctagggatctcactt
ctgtttgcgagtcgtacagaaggatagttgcaaggttatcgcgagtagag
tttgtgttcggtacccctgggcgtgaaggcaataactgaatccagtactg
cgccagaggtctggagaccatctcggctaggtagatgaggacgcgtagcg
catgtgagcgaacagaaagaacagatgtcttgagaaaacttgttttctca
aaagtatcatctgttgtagaacaggatcctagcatgtaaaacctcggttt
aaagatggctgtatgaagaacgggcatcaaggttggtaacgctcgcgaat
atgcatcacgggtggcttcgtcgcgggggcttttttgtcctatgtataag
atggcacgaagtgtgacagataaagcagtgccatctgtgggatgagggga
ggaagttgtcttgtcggcaaggttgcaaaggagaggaagggTTTCAAGTG
AAGGTGGCAGGGCGTGGAAGAAGTTGGCAACACATAAGTGGACTTTTGGG
CCGTTTTCCGTCGCCAGTGTTGTAAAGAAAGGACGAAGGAGATCAGCCGT
AGCATGTTCCGCTTCTGCTACTGAGCAAGCCCATGATGCCTCTGATAAGC
TTACGCTTTCTTGCAAATTTGCCAGAGCAGTCGGTAGATCTTGAGTCGGG
GAACATGAAGACACAGAATTTGAACGGGTATTCCCGCGACGGCGGACGCG
GGGCCTATTCATCTTGACCACTTCCTTACCTTCAGAAATCTCCTACCAAA
GTCATGATGGTCGCGGTTTCCGCTccatcagcgacaagacatggccaaac
cggagctctgacaacttatatgcagtcttttcgcgggaatgatgacggac
aagtttttgggccagcaaaaaagccgaagtcatgtggcaatacAGAGTAA
CCCTTATCTACCCTTGGTAGATAGTACTGTATCTATCTACATCGCGCACG
AGCTTGTCTTAGGTAGCGTTCTGCCTTCAACCTTTGGCCCCGAAGGCAAG
AGTGCAGCTGTGGCTTCCGCGCAGGCTTTGCCTTGCACTCGTCAGTATGC
AACCGCCAAATCCTACGCGAAGACCAACTCTGTCGTCGCGTCTGTCGCGA
ACCGTCCCGCAATACATTGTGCGCCTCGCGCATGAACCTTCAAATGGCCT
GCACTTCGTCGTGCGTCACGCTCAGTCGAGAACTGCACCAGCGCTCACAG
GGATTTCGCAGTTGCTACGCCGAAGAAGCCGCGAGATATCGATTGATATC
ATTGACGCCACTGATGCCGCCGCCATTCTGGGCGAAGATATGACGAAGGC
GTCGGATACTTTGCAGAGAATCGATGAAATCCTAAAGAATGTCTTGACGG
AAGACAGGGATTAG
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Coding sequence (CDS) from alignment at tig00000108_pilon:203627..211740+

>Ggra10394.t1 ID=Ggra10394.t1|Name=Ggra10394.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00000108_pilon:203627..211740+ (Gracilaria gracilis GNS1m male)
ATGTCGCCGTCGTCCTCCTCGCACTcgccgccgccgccgccgccgccgcc
gctgccgccgTTGCTGCCGCCCGCCGCGCACGAGGTCGACCACCCGCTGC
GCTCCGACCCGCTCAACGAGCTGCCGGAtgccgtgcgcgtgccgcgcgtg
cgccgccgcgcgtcgccgcgcccacgcgtgtcgtcgtcgtcgtcgcCGCC
GCCGCCGTTTTCGCCATTGCCGTCGCGTGCGCGCCCTCCCGCCGTCGCGT
CCATCGCCGCCGCGCCGCCGTCGCCCGACCAGCTGTCCGAGCAAGTCAGC
AGCCTGCTGCACGACCACCGCCAGCGCGATGCGCACGACCCGCTGCTGCA
CCACCTCGCGCAGCGCGTGGTCGCGCCACCGCCGCCGCCGGCCGGCCACG
CGTACGCCGCGGACATGCACCAAGTGCTGGCCGCGTGCGACGCCAGCGAG
CGCGCCTCGCACTCAGACGGCGTCATGGATCGCTCCGACCTcacgctTAT
GCAACCGCCAAATCCTACGCGAAGACCAACTCTGTCGTCGCGTCTGTCGC
GAACCGTCCCGCAATACATTGTGCGCCTCGCGCATGAACCTTCAAATGGC
CTGCACTTCGTCGTGCGTCACGCTCAGTCGAGAACTGCACCAGCGCTCAC
AGGGATTTCGCAGTTGCTACGCCGAAGAAGCCGCGAGATATCGATTGATA
TCATTGACGCCACTGATGCCGCCGCCATTCTGGGCGAAGATATGACGAAG
GCGTCGGATACTTTGCAGAGAATCGATGAAATCCTAAAGAATGTCTTGAC
GGAAGACAGGGATTAG
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