Ggra10392.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10392.t1
Unique NameGgra10392.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:196257..197321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX34118
PFAMsHMGL-like,LeuA_dimer
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
Evalue1.14e-79
EggNOG OGsCOG0119@1|root,KOG2367@2759|Eukaryota
EC2.3.3.13
DescriptionBelongs to the alpha-IPM synthase homocitrate synthase family
COG categoryE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10392Ggra10392Gracilaria gracilis GNS1m malegenetig00000108_pilon 196257..197321 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10392.t1.stop1Ggra10392.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 196257..196259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10392.t1.CDS1Ggra10392.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 196257..197321 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10392.t1.exon1Ggra10392.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 196257..197321 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10392.t1.start1Ggra10392.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 197319..197321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10392.t1Ggra10392.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 196257..197321 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10392.t1 ID=Ggra10392.t1|Name=Ggra10392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=355bp
MFSTSSSFIPPLLLFRARNTCHSSLKRETTSCKIKIFDTTLRDGELNTGV
SFSHDDKLRIAHQLCTLGVDVIEAGFPALYSSDIESLEQICRQVGNLSGS
PSICALARANRNDIQVGFESIQHALYPRIHTFLTTSRPQTASLWENYGNK
LLRMTESAVRYAKSVCSDVEFSAADAFRTDRNLLIEIVECAIQSGATTIS
IPDTHGTALPSEVSSLFSFIRQHAKRVNGITLSMHAHNDLGLAVANSLSA
IQSGATQVEVSVNGIGARAGNASLEEVVRALFVRRKAFRDAFRDASNDTF
SGDEEQFVGELTNVRRHHLAETCRMVAKHSGINVQPNKAIADANARSSID
VHGT*
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spliced messenger RNA

>Ggra10392.t1 ID=Ggra10392.t1|Name=Ggra10392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000108_pilon:196257..197321- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCCACATCTTCATCGTTCATTCCACCTCTTTTGCTGTTTCGTGC
ACGTAACACTTGCCATTCTTCCCTGAAAAGAGAAACAACGTCATGCAAGA
TCAAAATCTTCGACACCACTCTTCGCGATGGTGAACTAAATACGGGCGTA
TCATTCTCTCATGACGACAAGCTGCGCATTGCGCATCAGTTGTGTACACT
CGGTGTCGATGTGATAGAAGCAGGGTTCCCAGCATTGTATTCATCTGACA
TTGAATCGCTCGAGCAGATCTGCAGACAAGTAGGAAATCTATCGGGCTCG
CCTTCGATATGTGCTCTCGCTCGTGCGAATCGAAACGATATTCAAGTAGG
CTTCGAATCTATTCAGCACGCATTATACCCTCGTATCCATACGTTTCTGA
CAACTTCGCGCCCACAGACGGCTTCTCTGTGGGAGAACTACGGGAACAAG
TTGCTACGAATGACTGAGAGTGCAGTTCGGTACGCAAAAAGCGTTTGCTC
AGACGTTGAGTTTTCAGCGGCAGATGCGTTCCGGACCGACCGAAATCTGT
TAATTGAGATAGTGGAGTGTGCAATTCAGTCAGGAGCAACAACAATAAGT
ATACCAGATACACATGGAACGGCTCTTCCATCAGAGGTCTCGTCTTTATT
CAGCTTTATACGACAGCATGCCAAACGAGTGAATGGTATTACGCTGTCAA
TGCACGCACATAACGATCTTGGCTTAGCTGTTGCGAACAGTCTGAGTGCC
ATTCAAAGCGGCGCCACACAAGTGGAAGTTTCTGTGAATGGAATTGGCGC
CAGAGCTGGCAATGCCTCGCTTGAAGAAGTTGTGAGGGCGTTGTTTGTTA
GACGAAAGGCGTTTCGGGACGCGTTTCGTGACGCAAGTAATGACACGTTT
AGCGGCGATGAAGAGCAGTTTGTCGGCGAGCTCACGAACGTTAGACGGCA
TCATTTGGCTGAGACATGTCGAATGGTTGCCAAGCATTCTGGTATCAATG
TACAGCCAAACAAGGCTATCGCAGATGCCAATGCTCGGTCGTCCATTGAT
GTGCATGGTACATAG
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protein sequence of Ggra10392.t1

>Ggra10392.t1 ID=Ggra10392.t1|Name=Ggra10392.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MFSTSSSFIPPLLLFRARNTCHSSLKRETTSCKIKIFDTTLRDGELNTGV
SFSHDDKLRIAHQLCTLGVDVIEAGFPALYSSDIESLEQICRQVGNLSGS
PSICALARANRNDIQVGFESIQHALYPRIHTFLTTSRPQTASLWENYGNK
LLRMTESAVRYAKSVCSDVEFSAADAFRTDRNLLIEIVECAIQSGATTIS
IPDTHGTALPSEVSSLFSFIRQHAKRVNGITLSMHAHNDLGLAVANSLSA
IQSGATQVEVSVNGIGARAGNASLEEVVRALFVRRKAFRDAFRDASNDTF
SGDEEQFVGELTNVRRHHLAETCRMVAKHSGINVQPNKAIADANARSSID
VHGT*
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mRNA from alignment at tig00000108_pilon:196257..197321-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10392.t1 ID=Ggra10392.t1|Name=Ggra10392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000108_pilon:196257..197321- (Gracilaria gracilis GNS1m male)
ATGTTCTCCACATCTTCATCGTTCATTCCACCTCTTTTGCTGTTTCGTGC
ACGTAACACTTGCCATTCTTCCCTGAAAAGAGAAACAACGTCATGCAAGA
TCAAAATCTTCGACACCACTCTTCGCGATGGTGAACTAAATACGGGCGTA
TCATTCTCTCATGACGACAAGCTGCGCATTGCGCATCAGTTGTGTACACT
CGGTGTCGATGTGATAGAAGCAGGGTTCCCAGCATTGTATTCATCTGACA
TTGAATCGCTCGAGCAGATCTGCAGACAAGTAGGAAATCTATCGGGCTCG
CCTTCGATATGTGCTCTCGCTCGTGCGAATCGAAACGATATTCAAGTAGG
CTTCGAATCTATTCAGCACGCATTATACCCTCGTATCCATACGTTTCTGA
CAACTTCGCGCCCACAGACGGCTTCTCTGTGGGAGAACTACGGGAACAAG
TTGCTACGAATGACTGAGAGTGCAGTTCGGTACGCAAAAAGCGTTTGCTC
AGACGTTGAGTTTTCAGCGGCAGATGCGTTCCGGACCGACCGAAATCTGT
TAATTGAGATAGTGGAGTGTGCAATTCAGTCAGGAGCAACAACAATAAGT
ATACCAGATACACATGGAACGGCTCTTCCATCAGAGGTCTCGTCTTTATT
CAGCTTTATACGACAGCATGCCAAACGAGTGAATGGTATTACGCTGTCAA
TGCACGCACATAACGATCTTGGCTTAGCTGTTGCGAACAGTCTGAGTGCC
ATTCAAAGCGGCGCCACACAAGTGGAAGTTTCTGTGAATGGAATTGGCGC
CAGAGCTGGCAATGCCTCGCTTGAAGAAGTTGTGAGGGCGTTGTTTGTTA
GACGAAAGGCGTTTCGGGACGCGTTTCGTGACGCAAGTAATGACACGTTT
AGCGGCGATGAAGAGCAGTTTGTCGGCGAGCTCACGAACGTTAGACGGCA
TCATTTGGCTGAGACATGTCGAATGGTTGCCAAGCATTCTGGTATCAATG
TACAGCCAAACAAGGCTATCGCAGATGCCAATGCTCGGTCGTCCATTGAT
GTGCATGGTACATAG
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Coding sequence (CDS) from alignment at tig00000108_pilon:196257..197321-

>Ggra10392.t1 ID=Ggra10392.t1|Name=Ggra10392.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000108_pilon:196257..197321- (Gracilaria gracilis GNS1m male)
ATGTTCTCCACATCTTCATCGTTCATTCCACCTCTTTTGCTGTTTCGTGC
ACGTAACACTTGCCATTCTTCCCTGAAAAGAGAAACAACGTCATGCAAGA
TCAAAATCTTCGACACCACTCTTCGCGATGGTGAACTAAATACGGGCGTA
TCATTCTCTCATGACGACAAGCTGCGCATTGCGCATCAGTTGTGTACACT
CGGTGTCGATGTGATAGAAGCAGGGTTCCCAGCATTGTATTCATCTGACA
TTGAATCGCTCGAGCAGATCTGCAGACAAGTAGGAAATCTATCGGGCTCG
CCTTCGATATGTGCTCTCGCTCGTGCGAATCGAAACGATATTCAAGTAGG
CTTCGAATCTATTCAGCACGCATTATACCCTCGTATCCATACGTTTCTGA
CAACTTCGCGCCCACAGACGGCTTCTCTGTGGGAGAACTACGGGAACAAG
TTGCTACGAATGACTGAGAGTGCAGTTCGGTACGCAAAAAGCGTTTGCTC
AGACGTTGAGTTTTCAGCGGCAGATGCGTTCCGGACCGACCGAAATCTGT
TAATTGAGATAGTGGAGTGTGCAATTCAGTCAGGAGCAACAACAATAAGT
ATACCAGATACACATGGAACGGCTCTTCCATCAGAGGTCTCGTCTTTATT
CAGCTTTATACGACAGCATGCCAAACGAGTGAATGGTATTACGCTGTCAA
TGCACGCACATAACGATCTTGGCTTAGCTGTTGCGAACAGTCTGAGTGCC
ATTCAAAGCGGCGCCACACAAGTGGAAGTTTCTGTGAATGGAATTGGCGC
CAGAGCTGGCAATGCCTCGCTTGAAGAAGTTGTGAGGGCGTTGTTTGTTA
GACGAAAGGCGTTTCGGGACGCGTTTCGTGACGCAAGTAATGACACGTTT
AGCGGCGATGAAGAGCAGTTTGTCGGCGAGCTCACGAACGTTAGACGGCA
TCATTTGGCTGAGACATGTCGAATGGTTGCCAAGCATTCTGGTATCAATG
TACAGCCAAACAAGGCTATCGCAGATGCCAATGCTCGGTCGTCCATTGAT
GTGCATGGTACATAG
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